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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166201 4v5q:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166202 4v5q:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166203 4v5q:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166204 4v5q:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166205 4v5q:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166206 4v5q:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166207 4v5q:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166208 4v5q:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166209 4v5q:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166210 4v5q:CG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166211 4v5q:CG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166212 4v5q:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166213 4v5q:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166214 4v5q:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166215 4v5q:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166216 4v5q:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166217 4v5q:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166218 4v5q:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166219 4v5q:CM (3.1) BS03 rna ? GO:0000049 ... P80377 21378964
    166220 4v5q:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166221 4v5q:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166222 4v5q:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166223 4v5q:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166224 4v5q:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166225 4v5q:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166226 4v5q:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166227 4v5q:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166228 4v5q:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166229 4v5q:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166230 4v5q:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166231 4v5q:CZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    166232 4v5q:CZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    166233 4v5q:CZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    166234 4v5q:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166235 4v5q:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166236 4v5q:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166237 4v5q:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166238 4v5q:D1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    166239 4v5q:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166240 4v5q:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166241 4v5q:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166242 4v5q:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166243 4v5q:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166244 4v5q:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166245 4v5q:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166246 4v5q:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166247 4v5q:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166248 4v5q:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166249 4v5q:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166250 4v5q:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166251 4v5q:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166252 4v5q:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166253 4v5q:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166254 4v5q:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166255 4v5q:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166256 4v5q:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166257 4v5q:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166258 4v5q:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166259 4v5q:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166260 4v5q:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166261 4v5q:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166262 4v5q:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166263 4v5q:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166264 4v5q:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166265 4v5q:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166266 4v5q:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166267 4v5q:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166268 4v5q:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166269 4v5q:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166270 4v5q:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166271 4v5q:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166272 4v5q:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166273 4v5q:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166274 4v5q:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166275 4v5r:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166276 4v5r:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166277 4v5r:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166278 4v5r:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166279 4v5r:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166280 4v5r:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166281 4v5r:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166282 4v5r:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166283 4v5r:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166284 4v5r:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166285 4v5r:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166286 4v5r:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166287 4v5r:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166288 4v5r:AL (3.1) BS02 rna ? GO:0000049 ... Q5SHN3 21378964
    166289 4v5r:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166290 4v5r:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166291 4v5r:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166292 4v5r:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166293 4v5r:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166294 4v5r:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166295 4v5r:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166296 4v5r:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166297 4v5r:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166298 4v5r:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166299 4v5r:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166300 4v5r:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166301 4v5r:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166302 4v5r:AZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    166303 4v5r:AZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    166304 4v5r:AZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    166305 4v5r:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166306 4v5r:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166307 4v5r:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166308 4v5r:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166309 4v5r:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166310 4v5r:B4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 21378964
    166311 4v5r:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166312 4v5r:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166313 4v5r:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166314 4v5r:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166315 4v5r:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166316 4v5r:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166317 4v5r:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166318 4v5r:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166319 4v5r:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166320 4v5r:BD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166321 4v5r:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166322 4v5r:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166323 4v5r:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166324 4v5r:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166325 4v5r:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166326 4v5r:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166327 4v5r:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166328 4v5r:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166329 4v5r:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166330 4v5r:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166331 4v5r:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166332 4v5r:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166333 4v5r:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166334 4v5r:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166335 4v5r:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166336 4v5r:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166337 4v5r:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166338 4v5r:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166339 4v5r:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166340 4v5r:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166341 4v5r:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166342 4v5r:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166343 4v5r:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166344 4v5r:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166345 4v5r:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166346 4v5r:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166347 4v5r:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166348 4v5r:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166349 4v5r:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166350 4v5r:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166351 4v5r:CG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166352 4v5r:CG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166353 4v5r:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166354 4v5r:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166355 4v5r:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166356 4v5r:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166357 4v5r:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166358 4v5r:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166359 4v5r:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166360 4v5r:CM (3.1) BS03 rna ? GO:0000049 ... P80377 21378964
    166361 4v5r:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166362 4v5r:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166363 4v5r:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166364 4v5r:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166365 4v5r:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166366 4v5r:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166367 4v5r:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166368 4v5r:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166369 4v5r:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166370 4v5r:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166371 4v5r:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166372 4v5r:CZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    166373 4v5r:CZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    166374 4v5r:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166375 4v5r:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166376 4v5r:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166377 4v5r:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166378 4v5r:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166379 4v5r:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166380 4v5r:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166381 4v5r:D4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 21378964
    166382 4v5r:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166383 4v5r:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166384 4v5r:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166385 4v5r:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166386 4v5r:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166387 4v5r:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166388 4v5r:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166389 4v5r:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166390 4v5r:DD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166391 4v5r:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166392 4v5r:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166393 4v5r:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166394 4v5r:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166395 4v5r:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166396 4v5r:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166397 4v5r:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166398 4v5r:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166399 4v5r:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166400 4v5r:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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