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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166001 4v5p:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166002 4v5p:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166003 4v5p:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166004 4v5p:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166005 4v5p:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166006 4v5p:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166007 4v5p:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166008 4v5p:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166009 4v5p:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166010 4v5p:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166011 4v5p:AM (3.1) BS03 rna ? GO:0000049 ... P80377 21378964
    166012 4v5p:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166013 4v5p:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166014 4v5p:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166015 4v5p:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166016 4v5p:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166017 4v5p:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166018 4v5p:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166019 4v5p:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166020 4v5p:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166021 4v5p:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166022 4v5p:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166023 4v5p:AZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    166024 4v5p:AZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    166025 4v5p:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166026 4v5p:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166027 4v5p:B0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166028 4v5p:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166029 4v5p:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166030 4v5p:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166031 4v5p:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166032 4v5p:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166033 4v5p:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166034 4v5p:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166035 4v5p:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166036 4v5p:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166037 4v5p:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166038 4v5p:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166039 4v5p:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166040 4v5p:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166041 4v5p:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166042 4v5p:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166043 4v5p:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166044 4v5p:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166045 4v5p:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166046 4v5p:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166047 4v5p:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166048 4v5p:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166049 4v5p:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166050 4v5p:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166051 4v5p:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166052 4v5p:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166053 4v5p:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166054 4v5p:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166055 4v5p:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166056 4v5p:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166057 4v5p:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166058 4v5p:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166059 4v5p:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166060 4v5p:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166061 4v5p:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166062 4v5p:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166063 4v5p:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166064 4v5p:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166065 4v5p:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166066 4v5p:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166067 4v5p:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166068 4v5p:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166069 4v5p:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166070 4v5p:CG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166071 4v5p:CG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166072 4v5p:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166073 4v5p:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166074 4v5p:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166075 4v5p:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166076 4v5p:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166077 4v5p:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166078 4v5p:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166079 4v5p:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166080 4v5p:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166081 4v5p:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166082 4v5p:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166083 4v5p:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166084 4v5p:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166085 4v5p:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166086 4v5p:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166087 4v5p:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166088 4v5p:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166089 4v5p:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166090 4v5p:CZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    166091 4v5p:CZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    166092 4v5p:CZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    166093 4v5p:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166094 4v5p:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166095 4v5p:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166096 4v5p:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166097 4v5p:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166098 4v5p:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166099 4v5p:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166100 4v5p:D4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 21378964
    166101 4v5p:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166102 4v5p:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166103 4v5p:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166104 4v5p:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166105 4v5p:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166106 4v5p:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166107 4v5p:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166108 4v5p:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166109 4v5p:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166110 4v5p:DD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166111 4v5p:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166112 4v5p:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166113 4v5p:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166114 4v5p:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166115 4v5p:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166116 4v5p:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166117 4v5p:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166118 4v5p:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166119 4v5p:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166120 4v5p:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166121 4v5p:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166122 4v5p:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166123 4v5p:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166124 4v5p:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166125 4v5p:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166126 4v5p:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166127 4v5p:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166128 4v5p:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166129 4v5p:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166130 4v5p:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166131 4v5p:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166132 4v5p:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166133 4v5p:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166134 4v5p:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166135 4v5q:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166136 4v5q:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166137 4v5q:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166138 4v5q:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166139 4v5q:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166140 4v5q:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166141 4v5q:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166142 4v5q:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166143 4v5q:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166144 4v5q:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166145 4v5q:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166146 4v5q:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166147 4v5q:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166148 4v5q:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166149 4v5q:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166150 4v5q:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166151 4v5q:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166152 4v5q:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166153 4v5q:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166154 4v5q:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166155 4v5q:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166156 4v5q:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166157 4v5q:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166158 4v5q:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166159 4v5q:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166160 4v5q:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166161 4v5q:AZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    166162 4v5q:AZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    166163 4v5q:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166164 4v5q:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166165 4v5q:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166166 4v5q:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166167 4v5q:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166168 4v5q:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166169 4v5q:B4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 21378964
    166170 4v5q:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166171 4v5q:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166172 4v5q:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166173 4v5q:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166174 4v5q:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166175 4v5q:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166176 4v5q:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166177 4v5q:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166178 4v5q:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166179 4v5q:BD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166180 4v5q:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166181 4v5q:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166182 4v5q:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166183 4v5q:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166184 4v5q:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166185 4v5q:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166186 4v5q:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166187 4v5q:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166188 4v5q:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166189 4v5q:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166190 4v5q:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166191 4v5q:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166192 4v5q:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166193 4v5q:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166194 4v5q:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166195 4v5q:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166196 4v5q:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166197 4v5q:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166198 4v5q:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166199 4v5q:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166200 4v5q:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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