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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165801 4v5m:AF (7.8) BS01 rna ? GO:0003735 ... Q5SLP8 21124459
    165802 4v5m:AG (7.8) BS01 rna ? GO:0000028 ... P17291 21124459
    165803 4v5m:AH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    165804 4v5m:AI (7.8) BS01 rna ? GO:0000049 ... P80374 21124459
    165805 4v5m:AJ (7.8) BS01 rna ? GO:0000049 ... Q5SHN7 21124459
    165806 4v5m:AK (7.8) BS01 rna ? GO:0003735 ... P80376 21124459
    165807 4v5m:AL (7.8) BS01 rna ? GO:0000049 ... Q5SHN3 21124459
    165808 4v5m:AM (7.8) BS01 rna ? GO:0000049 ... P80377 21124459
    165809 4v5m:AN (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    165810 4v5m:AO (7.8) BS01 rna ? GO:0003735 ... Q5SJ76 21124459
    165811 4v5m:AP (7.8) BS01 rna ? GO:0003735 ... Q5SJH3 21124459
    165812 4v5m:AQ (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    165813 4v5m:AR (7.8) BS01 rna ? GO:0003735 ... Q5SLQ0 21124459
    165814 4v5m:AS (7.8) BS01 rna ? GO:0000028 ... Q5SHP2 21124459
    165815 4v5m:AT (7.8) BS01 rna ? GO:0003723 ... P80380 21124459
    165816 4v5m:AY (7.8) BS01 rna ? GO:0003746 ... Q5SHN5 21124459
    165817 4v5m:AY (7.8) BS02 rna ? GO:0003746 ... Q5SHN5 21124459
    165818 4v5m:AY (7.8) BS03 FUA ? GO:0003746 ... Q5SHN5 21124459
    165819 4v5m:AY (7.8) BS04 GDP ? GO:0003746 ... Q5SHN5 21124459
    165820 4v5m:B0 (7.8) BS01 rna ? GO:0003735 ... P60493 21124459
    165821 4v5m:B0 (7.8) BS02 rna ? GO:0003735 ... P60493 21124459
    165822 4v5m:B1 (7.8) BS01 rna ? GO:0003735 ... P60494 21124459
    165823 4v5m:B1 (7.8) BS02 rna ? GO:0003735 ... P60494 21124459
    165824 4v5m:B2 (7.8) BS01 rna ? GO:0003735 ... Q5SHP6 21124459
    165825 4v5m:B3 (7.8) BS01 rna ? GO:0003735 ... Q5SHQ6 21124459
    165826 4v5m:B4 (7.8) BS01 rna ? GO:0003735 ... Q5SJE1 21124459
    165827 4v5m:B5 (7.8) BS01 rna ? GO:0003735 ... P80339 21124459
    165828 4v5m:B6 (7.8) BS01 rna ? GO:0000049 ... P35871 21124459
    165829 4v5m:B7 (7.8) BS01 rna ? GO:0003735 ... P80340 21124459
    165830 4v5m:B8 (7.8) BS01 rna ? GO:0003735 ... Q5SKU1 21124459
    165831 4v5m:B9 (7.8) BS01 rna ? GO:0003735 ... Q5SHR2 21124459
    165832 4v5m:BC (7.8) BS01 rna ? GO:0000049 ... Q5SLP7 21124459
    165833 4v5m:BC (7.8) BS02 rna ? GO:0000049 ... Q5SLP7 21124459
    165834 4v5m:BD (7.8) BS01 rna ? GO:0002181 ... P60405 21124459
    165835 4v5m:BE (7.8) BS01 rna ? GO:0003735 ... Q5SHN8 21124459
    165836 4v5m:BF (7.8) BS01 rna ? GO:0003735 ... Q5SHN9 21124459
    165837 4v5m:BG (7.8) BS01 rna ? GO:0000049 ... Q5SHQ0 21124459
    165838 4v5m:BG (7.8) BS02 rna ? GO:0000049 ... Q5SHQ0 21124459
    165839 4v5m:BH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    165840 4v5m:BK (7.8) BS01 rna ? GO:0003735 ... Q5SLP6 21124459
    165841 4v5m:BN (7.8) BS01 rna ? GO:0003729 ... P60488 21124459
    165842 4v5m:BO (7.8) BS01 rna ? GO:0003735 ... Q5SHP8 21124459
    165843 4v5m:BO (7.8) BS02 rna ? GO:0003735 ... Q5SHP8 21124459
    165844 4v5m:BP (7.8) BS01 rna ? GO:0003735 ... Q5SHQ7 21124459
    165845 4v5m:BQ (7.8) BS01 rna ? GO:0000049 ... P60489 21124459
    165846 4v5m:BQ (7.8) BS02 rna ? GO:0000049 ... P60489 21124459
    165847 4v5m:BR (7.8) BS01 rna ? GO:0003735 ... Q9Z9H5 21124459
    165848 4v5m:BS (7.8) BS01 rna ? GO:0003735 ... Q5SHQ4 21124459
    165849 4v5m:BS (7.8) BS02 rna ? GO:0003735 ... Q5SHQ4 21124459
    165850 4v5m:BT (7.8) BS01 rna ? GO:0003735 ... P60490 21124459
    165851 4v5m:BT (7.8) BS02 rna ? GO:0003735 ... P60490 21124459
    165852 4v5m:BU (7.8) BS01 rna ? GO:0000027 ... P60491 21124459
    165853 4v5m:BV (7.8) BS01 rna ? GO:0003723 ... P60492 21124459
    165854 4v5m:BW (7.8) BS01 rna ? GO:0003735 ... Q5SHP3 21124459
    165855 4v5m:BX (7.8) BS01 rna ? GO:0000027 ... Q5SHP0 21124459
    165856 4v5m:BY (7.8) BS01 rna ? GO:0003723 ... Q5SHP9 21124459
    165857 4v5m:BZ (7.8) BS01 rna ? GO:0003723 ... Q5SHZ1 21124459
    165858 4v5m:BZ (7.8) BS02 rna ? GO:0003723 ... Q5SHZ1 21124459
    165859 4v5n:AB (7.6) BS01 rna ? GO:0003735 ... P80371 21124459
    165860 4v5n:AC (7.6) BS01 rna ? GO:0003676 ... P80372 21124459
    165861 4v5n:AD (7.6) BS01 rna ? GO:0003723 ... P80373 21124459
    165862 4v5n:AE (7.6) BS01 rna ? GO:0003723 ... Q5SHQ5 21124459
    165863 4v5n:AF (7.6) BS01 rna ? GO:0003735 ... Q5SLP8 21124459
    165864 4v5n:AG (7.6) BS01 rna ? GO:0000028 ... P17291 21124459
    165865 4v5n:AH (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    165866 4v5n:AI (7.6) BS01 rna ? GO:0000049 ... P80374 21124459
    165867 4v5n:AJ (7.6) BS01 rna ? GO:0000049 ... Q5SHN7 21124459
    165868 4v5n:AK (7.6) BS01 rna ? GO:0003735 ... P80376 21124459
    165869 4v5n:AL (7.6) BS01 rna ? GO:0000049 ... Q5SHN3 21124459
    165870 4v5n:AM (7.6) BS01 rna ? GO:0000049 ... P80377 21124459
    165871 4v5n:AM (7.6) BS02 rna ? GO:0000049 ... P80377 21124459
    165872 4v5n:AN (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    165873 4v5n:AO (7.6) BS01 rna ? GO:0003735 ... Q5SJ76 21124459
    165874 4v5n:AP (7.6) BS01 rna ? GO:0003735 ... Q5SJH3 21124459
    165875 4v5n:AQ (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    165876 4v5n:AR (7.6) BS01 rna ? GO:0003735 ... Q5SLQ0 21124459
    165877 4v5n:AS (7.6) BS01 rna ? GO:0000028 ... Q5SHP2 21124459
    165878 4v5n:AT (7.6) BS01 rna ? GO:0003723 ... P80380 21124459
    165879 4v5n:AY (7.6) BS01 rna ? GO:0003746 ... Q5SHN5 21124459
    165880 4v5n:AY (7.6) BS02 rna ? GO:0003746 ... Q5SHN5 21124459
    165881 4v5n:AY (7.6) BS03 FUA ? GO:0003746 ... Q5SHN5 21124459
    165882 4v5n:AY (7.6) BS04 GDP ? GO:0003746 ... Q5SHN5 21124459
    165883 4v5n:B0 (7.6) BS01 rna ? GO:0003735 ... P60493 21124459
    165884 4v5n:B0 (7.6) BS02 rna ? GO:0003735 ... P60493 21124459
    165885 4v5n:B1 (7.6) BS01 rna ? GO:0003735 ... P60494 21124459
    165886 4v5n:B1 (7.6) BS02 rna ? GO:0003735 ... P60494 21124459
    165887 4v5n:B2 (7.6) BS01 rna ? GO:0003735 ... Q5SHP6 21124459
    165888 4v5n:B3 (7.6) BS01 rna ? GO:0003735 ... Q5SHQ6 21124459
    165889 4v5n:B4 (7.6) BS01 rna ? GO:0003735 ... Q5SJE1 21124459
    165890 4v5n:B5 (7.6) BS01 rna ? GO:0003735 ... P80339 21124459
    165891 4v5n:B6 (7.6) BS01 rna ? GO:0000049 ... P35871 21124459
    165892 4v5n:B7 (7.6) BS01 rna ? GO:0003735 ... P80340 21124459
    165893 4v5n:B8 (7.6) BS01 rna ? GO:0003735 ... Q5SKU1 21124459
    165894 4v5n:B9 (7.6) BS01 rna ? GO:0003735 ... Q5SHR2 21124459
    165895 4v5n:BC (7.6) BS01 rna ? GO:0000049 ... Q5SLP7 21124459
    165896 4v5n:BD (7.6) BS01 rna ? GO:0002181 ... P60405 21124459
    165897 4v5n:BE (7.6) BS01 rna ? GO:0003735 ... Q5SHN8 21124459
    165898 4v5n:BF (7.6) BS01 rna ? GO:0003735 ... Q5SHN9 21124459
    165899 4v5n:BG (7.6) BS01 rna ? GO:0000049 ... Q5SHQ0 21124459
    165900 4v5n:BG (7.6) BS02 rna ? GO:0000049 ... Q5SHQ0 21124459
    165901 4v5n:BH (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    165902 4v5n:BK (7.6) BS01 rna ? GO:0003735 ... Q5SLP6 21124459
    165903 4v5n:BN (7.6) BS01 rna ? GO:0003729 ... P60488 21124459
    165904 4v5n:BO (7.6) BS01 rna ? GO:0003735 ... Q5SHP8 21124459
    165905 4v5n:BO (7.6) BS02 rna ? GO:0003735 ... Q5SHP8 21124459
    165906 4v5n:BP (7.6) BS01 rna ? GO:0003735 ... Q5SHQ7 21124459
    165907 4v5n:BQ (7.6) BS01 rna ? GO:0000049 ... P60489 21124459
    165908 4v5n:BQ (7.6) BS02 rna ? GO:0000049 ... P60489 21124459
    165909 4v5n:BR (7.6) BS01 rna ? GO:0003735 ... Q9Z9H5 21124459
    165910 4v5n:BS (7.6) BS01 rna ? GO:0003735 ... Q5SHQ4 21124459
    165911 4v5n:BS (7.6) BS02 rna ? GO:0003735 ... Q5SHQ4 21124459
    165912 4v5n:BT (7.6) BS01 rna ? GO:0003735 ... P60490 21124459
    165913 4v5n:BT (7.6) BS02 rna ? GO:0003735 ... P60490 21124459
    165914 4v5n:BU (7.6) BS01 rna ? GO:0000027 ... P60491 21124459
    165915 4v5n:BV (7.6) BS01 rna ? GO:0003723 ... P60492 21124459
    165916 4v5n:BW (7.6) BS01 rna ? GO:0003735 ... Q5SHP3 21124459
    165917 4v5n:BX (7.6) BS01 rna ? GO:0000027 ... Q5SHP0 21124459
    165918 4v5n:BY (7.6) BS01 rna ? GO:0003723 ... Q5SHP9 21124459
    165919 4v5n:BZ (7.6) BS01 rna ? GO:0003723 ... Q5SHZ1 21124459
    165920 4v5n:BZ (7.6) BS02 rna ? GO:0003723 ... Q5SHZ1 21124459
    165921 4v5o:A1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    165922 4v5o:A2 (3.93) BS01 rna ? GO:0000462 ... Q22AV0 21205638
    165923 4v5o:A3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165924 4v5o:A4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    165925 4v5o:A4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    165926 4v5o:A5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    165927 4v5o:A5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    165928 4v5o:A6 (3.93) BS01 rna ? GO:0000028 ... Q22CK0 21205638
    165929 4v5o:A6 (3.93) BS02 ZN ? GO:0000028 ... Q22CK0 21205638
    165930 4v5o:A7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    165931 4v5o:A9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165932 4v5o:A9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    165933 4v5o:AB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165934 4v5o:AC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    165935 4v5o:AD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    165936 4v5o:AE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    165937 4v5o:AG (3.93) BS01 rna ? GO:0000028 ... Q22WU7 21205638
    165938 4v5o:AH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    165939 4v5o:AI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165940 4v5o:AJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    165941 4v5o:AK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165942 4v5o:AL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    165943 4v5o:AM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    165944 4v5o:AM (3.93) BS02 rna N/A GO:0003676 ... N/A 21205638
    165945 4v5o:AN (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    165946 4v5o:AN (3.93) BS02 ZN ? GO:0003735 ... Q22MB0 21205638
    165947 4v5o:AO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165948 4v5o:AP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    165949 4v5o:AQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    165950 4v5o:AR (3.93) BS01 rna ? GO:0001934 ... Q24D42 21205638
    165951 4v5o:AS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    165952 4v5o:AT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165953 4v5o:AU (3.93) BS01 rna ? GO:0003735 ... Q22W26 21205638
    165954 4v5o:AV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165955 4v5o:AW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    165956 4v5o:AX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165957 4v5o:AY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    165958 4v5o:AZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165959 4v5o:B1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    165960 4v5o:B2 (3.93) BS01 rna ? GO:0000462 ... Q22AV0 21205638
    165961 4v5o:B3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165962 4v5o:B4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    165963 4v5o:B4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    165964 4v5o:B5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    165965 4v5o:B5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    165966 4v5o:B6 (3.93) BS01 rna ? GO:0000028 ... Q22CK0 21205638
    165967 4v5o:B6 (3.93) BS02 ZN ? GO:0000028 ... Q22CK0 21205638
    165968 4v5o:B7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    165969 4v5o:B9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165970 4v5o:B9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    165971 4v5o:BB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165972 4v5o:BC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    165973 4v5o:BD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    165974 4v5o:BE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    165975 4v5o:BG (3.93) BS01 rna ? GO:0000028 ... Q22WU7 21205638
    165976 4v5o:BH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    165977 4v5o:BI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165978 4v5o:BJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    165979 4v5o:BK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165980 4v5o:BL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    165981 4v5o:BM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    165982 4v5o:BN (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    165983 4v5o:BN (3.93) BS02 ZN ? GO:0003735 ... Q22MB0 21205638
    165984 4v5o:BO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165985 4v5o:BP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    165986 4v5o:BQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    165987 4v5o:BR (3.93) BS01 rna ? GO:0001934 ... Q24D42 21205638
    165988 4v5o:BS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    165989 4v5o:BT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165990 4v5o:BU (3.93) BS01 rna ? GO:0003735 ... Q22W26 21205638
    165991 4v5o:BV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165992 4v5o:BW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    165993 4v5o:BX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165994 4v5o:BY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    165995 4v5o:BZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    165996 4v5p:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    165997 4v5p:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    165998 4v5p:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    165999 4v5p:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166000 4v5p:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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