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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165601 4v5k:B3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 20852642
    165602 4v5k:B5 (3.2) BS01 rna ? GO:0003735 ... P80339 20852642
    165603 4v5k:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 20852642
    165604 4v5k:B6 (3.2) BS02 MG ? GO:0000049 ... P35871 20852642
    165605 4v5k:B7 (3.2) BS01 rna ? GO:0003735 ... P80340 20852642
    165606 4v5k:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 20852642
    165607 4v5k:B9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 20852642
    165608 4v5k:BC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 20852642
    165609 4v5k:BD (3.2) BS01 rna ? GO:0002181 ... P60405 20852642
    165610 4v5k:BD (3.2) BS02 MG ? GO:0002181 ... P60405 20852642
    165611 4v5k:BD (3.2) BS03 MG ? GO:0002181 ... P60405 20852642
    165612 4v5k:BD (3.2) BS04 MG ? GO:0002181 ... P60405 20852642
    165613 4v5k:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 20852642
    165614 4v5k:BE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 20852642
    165615 4v5k:BE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 20852642
    165616 4v5k:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 20852642
    165617 4v5k:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 20852642
    165618 4v5k:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 20852642
    165619 4v5k:BG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 20852642
    165620 4v5k:BH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    165621 4v5k:BH (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    165622 4v5k:BI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 20852642
    165623 4v5k:BN (3.2) BS01 rna ? GO:0003729 ... P60488 20852642
    165624 4v5k:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 20852642
    165625 4v5k:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 20852642
    165626 4v5k:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 20852642
    165627 4v5k:BP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 20852642
    165628 4v5k:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 20852642
    165629 4v5k:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 20852642
    165630 4v5k:BQ (3.2) BS03 MG ? GO:0000049 ... P60489 20852642
    165631 4v5k:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 20852642
    165632 4v5k:BR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 20852642
    165633 4v5k:BS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 20852642
    165634 4v5k:BS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 20852642
    165635 4v5k:BT (3.2) BS01 rna ? GO:0003735 ... P60490 20852642
    165636 4v5k:BT (3.2) BS02 rna ? GO:0003735 ... P60490 20852642
    165637 4v5k:BU (3.2) BS01 rna ? GO:0000027 ... P60491 20852642
    165638 4v5k:BV (3.2) BS01 rna ? GO:0003723 ... P60492 20852642
    165639 4v5k:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 20852642
    165640 4v5k:BX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 20852642
    165641 4v5k:BY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 20852642
    165642 4v5k:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 20852642
    165643 4v5k:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 20852642
    165644 4v5k:CB (3.2) BS01 rna ? GO:0003735 ... P80371 20852642
    165645 4v5k:CC (3.2) BS01 rna ? GO:0003676 ... P80372 20852642
    165646 4v5k:CC (3.2) BS02 MG ? GO:0003676 ... P80372 20852642
    165647 4v5k:CD (3.2) BS01 rna ? GO:0003723 ... P80373 20852642
    165648 4v5k:CD (3.2) BS02 ZN ? GO:0003723 ... P80373 20852642
    165649 4v5k:CE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 20852642
    165650 4v5k:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 20852642
    165651 4v5k:CG (3.2) BS01 rna ? GO:0000028 ... P17291 20852642
    165652 4v5k:CG (3.2) BS02 rna ? GO:0000028 ... P17291 20852642
    165653 4v5k:CG (3.2) BS03 rna ? GO:0000028 ... P17291 20852642
    165654 4v5k:CH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    165655 4v5k:CH (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    165656 4v5k:CI (3.2) BS01 rna ? GO:0000049 ... P80374 20852642
    165657 4v5k:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 20852642
    165658 4v5k:CJ (3.2) BS02 MG ? GO:0000049 ... Q5SHN7 20852642
    165659 4v5k:CK (3.2) BS01 rna ? GO:0003735 ... P80376 20852642
    165660 4v5k:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 20852642
    165661 4v5k:CL (3.2) BS02 peptide ? GO:0000049 ... Q5SHN3 20852642
    165662 4v5k:CM (3.2) BS01 rna ? GO:0000049 ... P80377 20852642
    165663 4v5k:CM (3.2) BS02 rna ? GO:0000049 ... P80377 20852642
    165664 4v5k:CM (3.2) BS03 MG ? GO:0000049 ... P80377 20852642
    165665 4v5k:CM (3.2) BS04 MG ? GO:0000049 ... P80377 20852642
    165666 4v5k:CN (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    165667 4v5k:CO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 20852642
    165668 4v5k:CO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 20852642
    165669 4v5k:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 20852642
    165670 4v5k:CQ (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    165671 4v5k:CQ (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    165672 4v5k:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 20852642
    165673 4v5k:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 20852642
    165674 4v5k:CS (3.2) BS02 MG ? GO:0000028 ... Q5SHP2 20852642
    165675 4v5k:CT (3.2) BS01 rna ? GO:0003723 ... P80380 20852642
    165676 4v5k:D0 (3.2) BS01 rna ? GO:0003735 ... P60493 20852642
    165677 4v5k:D0 (3.2) BS02 rna ? GO:0003735 ... P60493 20852642
    165678 4v5k:D1 (3.2) BS01 rna ? GO:0003735 ... P60494 20852642
    165679 4v5k:D1 (3.2) BS02 rna ? GO:0003735 ... P60494 20852642
    165680 4v5k:D2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 20852642
    165681 4v5k:D3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 20852642
    165682 4v5k:D3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 20852642
    165683 4v5k:D5 (3.2) BS01 rna ? GO:0003735 ... P80339 20852642
    165684 4v5k:D5 (3.2) BS02 MG ? GO:0003735 ... P80339 20852642
    165685 4v5k:D5 (3.2) BS03 MG ? GO:0003735 ... P80339 20852642
    165686 4v5k:D6 (3.2) BS01 rna ? GO:0000049 ... P35871 20852642
    165687 4v5k:D7 (3.2) BS01 rna ? GO:0003735 ... P80340 20852642
    165688 4v5k:D7 (3.2) BS02 MG ? GO:0003735 ... P80340 20852642
    165689 4v5k:D8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 20852642
    165690 4v5k:D9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 20852642
    165691 4v5k:DC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 20852642
    165692 4v5k:DC (3.2) BS02 rna ? GO:0000049 ... Q5SLP7 20852642
    165693 4v5k:DD (3.2) BS01 rna ? GO:0002181 ... P60405 20852642
    165694 4v5k:DD (3.2) BS02 MG ? GO:0002181 ... P60405 20852642
    165695 4v5k:DD (3.2) BS03 MG ? GO:0002181 ... P60405 20852642
    165696 4v5k:DE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 20852642
    165697 4v5k:DE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 20852642
    165698 4v5k:DE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 20852642
    165699 4v5k:DE (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 20852642
    165700 4v5k:DF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 20852642
    165701 4v5k:DF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 20852642
    165702 4v5k:DF (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 20852642
    165703 4v5k:DG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 20852642
    165704 4v5k:DG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 20852642
    165705 4v5k:DG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 20852642
    165706 4v5k:DH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    165707 4v5k:DI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 20852642
    165708 4v5k:DI (3.2) BS02 rna ? GO:0003735 ... Q5SLQ1 20852642
    165709 4v5k:DN (3.2) BS01 rna ? GO:0003729 ... P60488 20852642
    165710 4v5k:DO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 20852642
    165711 4v5k:DO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 20852642
    165712 4v5k:DP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 20852642
    165713 4v5k:DP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 20852642
    165714 4v5k:DP (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 20852642
    165715 4v5k:DQ (3.2) BS01 rna ? GO:0000049 ... P60489 20852642
    165716 4v5k:DR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 20852642
    165717 4v5k:DS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 20852642
    165718 4v5k:DS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 20852642
    165719 4v5k:DT (3.2) BS01 rna ? GO:0003735 ... P60490 20852642
    165720 4v5k:DT (3.2) BS02 rna ? GO:0003735 ... P60490 20852642
    165721 4v5k:DU (3.2) BS01 rna ? GO:0000027 ... P60491 20852642
    165722 4v5k:DU (3.2) BS02 MG ? GO:0000027 ... P60491 20852642
    165723 4v5k:DV (3.2) BS01 rna ? GO:0003723 ... P60492 20852642
    165724 4v5k:DW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 20852642
    165725 4v5k:DW (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 20852642
    165726 4v5k:DX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 20852642
    165727 4v5k:DY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 20852642
    165728 4v5k:DZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 20852642
    165729 4v5k:DZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 20852642
    165730 4v5l:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21051640
    165731 4v5l:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21051640
    165732 4v5l:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21051640
    165733 4v5l:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21051640
    165734 4v5l:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21051640
    165735 4v5l:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21051640
    165736 4v5l:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21051640
    165737 4v5l:AH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 21051640
    165738 4v5l:AI (3.1) BS01 rna ? GO:0000049 ... P62669 21051640
    165739 4v5l:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21051640
    165740 4v5l:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21051640
    165741 4v5l:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21051640
    165742 4v5l:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21051640
    165743 4v5l:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21051640
    165744 4v5l:AM (3.1) BS03 rna ? GO:0000049 ... P80377 21051640
    165745 4v5l:AM (3.1) BS04 rna ? GO:0000049 ... P80377 21051640
    165746 4v5l:AN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 21051640
    165747 4v5l:AN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 21051640
    165748 4v5l:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21051640
    165749 4v5l:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21051640
    165750 4v5l:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21051640
    165751 4v5l:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    165752 4v5l:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21051640
    165753 4v5l:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21051640
    165754 4v5l:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21051640
    165755 4v5l:AZ (3.1) BS01 rna ? GO:0003746 ... P60339 21051640
    165756 4v5l:AZ (3.1) BS02 rna ? GO:0003746 ... P60339 21051640
    165757 4v5l:AZ (3.1) BS03 rna ? GO:0003746 ... P60339 21051640
    165758 4v5l:AZ (3.1) BS04 MG ? GO:0003746 ... P60339 21051640
    165759 4v5l:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21051640
    165760 4v5l:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21051640
    165761 4v5l:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21051640
    165762 4v5l:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21051640
    165763 4v5l:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21051640
    165764 4v5l:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21051640
    165765 4v5l:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21051640
    165766 4v5l:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21051640
    165767 4v5l:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21051640
    165768 4v5l:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21051640
    165769 4v5l:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21051640
    165770 4v5l:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21051640
    165771 4v5l:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21051640
    165772 4v5l:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21051640
    165773 4v5l:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21051640
    165774 4v5l:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21051640
    165775 4v5l:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21051640
    165776 4v5l:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21051640
    165777 4v5l:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21051640
    165778 4v5l:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    165779 4v5l:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21051640
    165780 4v5l:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21051640
    165781 4v5l:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21051640
    165782 4v5l:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21051640
    165783 4v5l:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21051640
    165784 4v5l:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21051640
    165785 4v5l:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21051640
    165786 4v5l:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21051640
    165787 4v5l:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21051640
    165788 4v5l:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21051640
    165789 4v5l:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21051640
    165790 4v5l:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21051640
    165791 4v5l:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21051640
    165792 4v5l:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21051640
    165793 4v5l:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21051640
    165794 4v5l:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21051640
    165795 4v5l:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21051640
    165796 4v5l:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21051640
    165797 4v5m:AB (7.8) BS01 rna ? GO:0003735 ... P80371 21124459
    165798 4v5m:AC (7.8) BS01 rna ? GO:0003676 ... P80372 21124459
    165799 4v5m:AD (7.8) BS01 rna ? GO:0003723 ... P80373 21124459
    165800 4v5m:AE (7.8) BS01 rna ? GO:0003723 ... Q5SHQ5 21124459
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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