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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165201 4v5g:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    165202 4v5g:AG (3.6) BS01 rna ? GO:0000028 ... P17291 19833920
    165203 4v5g:AG (3.6) BS02 rna ? GO:0000028 ... P17291 19833920
    165204 4v5g:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165205 4v5g:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    165206 4v5g:AI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    165207 4v5g:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    165208 4v5g:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    165209 4v5g:AK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    165210 4v5g:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    165211 4v5g:AL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    165212 4v5g:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    165213 4v5g:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    165214 4v5g:AM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    165215 4v5g:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165216 4v5g:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    165217 4v5g:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    165218 4v5g:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    165219 4v5g:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165220 4v5g:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    165221 4v5g:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    165222 4v5g:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    165223 4v5g:AZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165224 4v5g:AZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165225 4v5g:AZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165226 4v5g:AZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165227 4v5g:AZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165228 4v5g:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    165229 4v5g:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    165230 4v5g:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    165231 4v5g:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    165232 4v5g:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    165233 4v5g:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    165234 4v5g:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    165235 4v5g:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    165236 4v5g:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    165237 4v5g:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    165238 4v5g:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    165239 4v5g:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    165240 4v5g:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    165241 4v5g:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    165242 4v5g:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    165243 4v5g:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    165244 4v5g:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    165245 4v5g:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    165246 4v5g:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    165247 4v5g:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    165248 4v5g:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165249 4v5g:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    165250 4v5g:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920
    165251 4v5g:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    165252 4v5g:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    165253 4v5g:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    165254 4v5g:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    165255 4v5g:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    165256 4v5g:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    165257 4v5g:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    165258 4v5g:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    165259 4v5g:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    165260 4v5g:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    165261 4v5g:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    165262 4v5g:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833920
    165263 4v5g:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    165264 4v5g:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    165265 4v5g:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    165266 4v5g:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    165267 4v5g:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    165268 4v5g:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    165269 4v5g:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    165270 4v5g:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    165271 4v5g:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    165272 4v5g:CG (3.6) BS01 rna ? GO:0000028 ... P17291 19833920
    165273 4v5g:CG (3.6) BS02 rna ? GO:0000028 ... P17291 19833920
    165274 4v5g:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165275 4v5g:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    165276 4v5g:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    165277 4v5g:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    165278 4v5g:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    165279 4v5g:CK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    165280 4v5g:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    165281 4v5g:CL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    165282 4v5g:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    165283 4v5g:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    165284 4v5g:CM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    165285 4v5g:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165286 4v5g:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    165287 4v5g:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    165288 4v5g:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833920
    165289 4v5g:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    165290 4v5g:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165291 4v5g:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    165292 4v5g:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    165293 4v5g:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    165294 4v5g:CZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165295 4v5g:CZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165296 4v5g:CZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165297 4v5g:CZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165298 4v5g:CZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    165299 4v5g:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    165300 4v5g:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    165301 4v5g:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    165302 4v5g:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    165303 4v5g:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833920
    165304 4v5g:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    165305 4v5g:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    165306 4v5g:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833920
    165307 4v5g:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    165308 4v5g:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    165309 4v5g:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    165310 4v5g:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    165311 4v5g:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    165312 4v5g:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    165313 4v5g:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    165314 4v5g:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    165315 4v5g:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    165316 4v5g:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833920
    165317 4v5g:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    165318 4v5g:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    165319 4v5g:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    165320 4v5g:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    165321 4v5g:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    165322 4v5g:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    165323 4v5g:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    165324 4v5g:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920
    165325 4v5g:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833920
    165326 4v5g:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    165327 4v5g:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    165328 4v5g:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    165329 4v5g:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    165330 4v5g:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    165331 4v5g:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    165332 4v5g:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    165333 4v5g:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    165334 4v5g:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    165335 4v5g:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    165336 4v5g:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    165337 4v5g:DX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833920
    165338 4v5g:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    165339 4v5g:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    165340 4v5g:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    165341 4v5h:AB (5.8) BS01 rna ? GO:0000028 ... P0A7V0 19933110
    165342 4v5h:AD (5.8) BS01 rna ? GO:0000028 ... P0A7V8 19933110
    165343 4v5h:AE (5.8) BS01 rna ? GO:0000028 ... P0A7W1 19933110
    165344 4v5h:AF (5.8) BS01 rna ? GO:0003735 ... P02358 19933110
    165345 4v5h:AG (5.8) BS01 rna ? GO:0003723 ... P02359 19933110
    165346 4v5h:AG (5.8) BS02 rna ? GO:0003723 ... P02359 19933110
    165347 4v5h:AH (5.8) BS01 rna ? GO:0000028 ... P0A7W7 19933110
    165348 4v5h:AI (5.8) BS01 rna ? GO:0000049 ... P0A7X3 19933110
    165349 4v5h:AJ (5.8) BS01 rna ? GO:0000049 ... P0A7R5 19933110
    165350 4v5h:AK (5.8) BS01 rna ? GO:0002181 ... P0A7R9 19933110
    165351 4v5h:AL (5.8) BS01 rna ? GO:0000049 ... P0A7S3 19933110
    165352 4v5h:AM (5.8) BS01 rna ? GO:0000049 ... P0A7S9 19933110
    165353 4v5h:AM (5.8) BS02 rna ? GO:0000049 ... P0A7S9 19933110
    165354 4v5h:AN (5.8) BS01 rna ? GO:0000028 ... P0AG59 19933110
    165355 4v5h:AO (5.8) BS01 rna ? GO:0003735 ... Q8X9M2 19933110
    165356 4v5h:AO (5.8) BS02 rna ? GO:0003735 ... Q8X9M2 19933110
    165357 4v5h:AP (5.8) BS01 rna ? GO:0000028 ... P0A7T3 19933110
    165358 4v5h:AQ (5.8) BS01 rna ? GO:0000028 ... P0AG63 19933110
    165359 4v5h:AR (5.8) BS01 rna ? GO:0003735 ... P0A7T7 19933110
    165360 4v5h:AS (5.8) BS01 rna ? GO:0003723 ... P0A7U3 19933110
    165361 4v5h:AT (5.8) BS01 rna ? GO:0000028 ... P0A7U7 19933110
    165362 4v5h:AU (5.8) BS01 rna ? GO:0003735 ... P68679 19933110
    165363 4v5h:B0 (5.8) BS01 rna ? GO:0000027 ... P0A7M2 19933110
    165364 4v5h:B1 (5.8) BS01 rna ? GO:0000027 ... P0A7M6 19933110
    165365 4v5h:B2 (5.8) BS01 rna ? GO:0000027 ... P0AG51 19933110
    165366 4v5h:B2 (5.8) BS02 rna ? GO:0000027 ... P0AG51 19933110
    165367 4v5h:B3 (5.8) BS01 rna ? GO:0000027 ... P0A7N4 19933110
    165368 4v5h:B4 (5.8) BS01 rna ? GO:0000027 ... P0A7N9 19933110
    165369 4v5h:B5 (5.8) BS01 rna ? GO:0000027 ... P0A7L0 19933110
    165370 4v5h:B6 (5.8) BS01 rna ? GO:0002181 ... P0A7P5 19933110
    165371 4v5h:B7 (5.8) BS01 rna ? GO:0002181 ... P0A7Q1 19933110
    165372 4v5h:B8 (5.8) BS01 rna ? GO:0002181 ... P0A7Q6 19933110
    165373 4v5h:BC (5.8) BS01 rna ? GO:0000027 ... P60422 19933110
    165374 4v5h:BD (5.8) BS01 rna ? GO:0000027 ... P60438 19933110
    165375 4v5h:BE (5.8) BS01 rna ? GO:0001070 ... P60723 19933110
    165376 4v5h:BF (5.8) BS01 rna ? GO:0000027 ... P62399 19933110
    165377 4v5h:BF (5.8) BS02 rna ? GO:0000027 ... P62399 19933110
    165378 4v5h:BF (5.8) BS03 rna ? GO:0000027 ... P62399 19933110
    165379 4v5h:BG (5.8) BS01 rna ? GO:0000027 ... P0AG55 19933110
    165380 4v5h:BH (5.8) BS01 rna ? GO:0002181 ... P0A7R1 19933110
    165381 4v5h:BI (5.8) BS01 rna ? GO:0000027 ... P0A7J7 19933110
    165382 4v5h:BJ (5.8) BS01 rna ? GO:0002181 ... P0AA10 19933110
    165383 4v5h:BK (5.8) BS01 rna ? GO:0002181 ... P0ADY3 19933110
    165384 4v5h:BK (5.8) BS02 rna ? GO:0002181 ... P0ADY3 19933110
    165385 4v5h:BL (5.8) BS01 rna ? GO:0002181 ... P02413 19933110
    165386 4v5h:BM (5.8) BS01 rna ? GO:0000027 ... P0ADY7 19933110
    165387 4v5h:BM (5.8) BS02 rna ? GO:0000027 ... P0ADY7 19933110
    165388 4v5h:BN (5.8) BS01 rna ? GO:0000027 ... P0AG44 19933110
    165389 4v5h:BO (5.8) BS01 rna ? GO:0002181 ... P0C018 19933110
    165390 4v5h:BO (5.8) BS02 rna ? GO:0002181 ... P0C018 19933110
    165391 4v5h:BP (5.8) BS01 rna ? GO:0000027 ... P0A7K6 19933110
    165392 4v5h:BP (5.8) BS02 rna ? GO:0000027 ... P0A7K6 19933110
    165393 4v5h:BQ (5.8) BS01 rna ? GO:0000027 ... P0A7L3 19933110
    165394 4v5h:BR (5.8) BS01 rna ? GO:0002181 ... P0AG48 19933110
    165395 4v5h:BS (5.8) BS01 rna ? GO:0002181 ... P61175 19933110
    165396 4v5h:BT (5.8) BS01 rna ? GO:0000027 ... P0ADZ0 19933110
    165397 4v5h:BU (5.8) BS01 rna ? GO:0000027 ... P60624 19933110
    165398 4v5h:BW (5.8) BS01 rna ? GO:0000027 ... P68919 19933110
    165399 4v5h:BY (5.8) BS01 rna ? GO:0000027 ... P0A7L8 19933110
    165400 4v5h:BY (5.8) BS02 rna ? GO:0000027 ... P0A7L8 19933110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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