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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165001 4v5e:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    165002 4v5e:CT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    165003 4v5e:CY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    165004 4v5e:CY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    165005 4v5e:CY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    165006 4v5e:CY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    165007 4v5e:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    165008 4v5e:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    165009 4v5e:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    165010 4v5e:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    165011 4v5e:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    165012 4v5e:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    165013 4v5e:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    165014 4v5e:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    165015 4v5e:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    165016 4v5e:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    165017 4v5e:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    165018 4v5e:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    165019 4v5e:DD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    165020 4v5e:DD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    165021 4v5e:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    165022 4v5e:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    165023 4v5e:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    165024 4v5e:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    165025 4v5e:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    165026 4v5e:DH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    165027 4v5e:DH (3.45) BS02 MG ? GO:0002181 ... P0DOY8 18988853
    165028 4v5e:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    165029 4v5e:DI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 18988853
    165030 4v5e:DK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    165031 4v5e:DN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    165032 4v5e:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    165033 4v5e:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 18988853
    165034 4v5e:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    165035 4v5e:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    165036 4v5e:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    165037 4v5e:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    165038 4v5e:DR (3.45) BS02 MG ? GO:0003735 ... Q9Z9H5 18988853
    165039 4v5e:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    165040 4v5e:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    165041 4v5e:DT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    165042 4v5e:DT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    165043 4v5e:DU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    165044 4v5e:DV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    165045 4v5e:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    165046 4v5e:DX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 18988853
    165047 4v5e:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    165048 4v5e:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    165049 4v5e:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    165050 4v5f:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    165051 4v5f:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    165052 4v5f:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    165053 4v5f:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    165054 4v5f:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    165055 4v5f:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    165056 4v5f:AG (3.6) BS01 rna ? GO:0000028 ... P17291 19833919
    165057 4v5f:AG (3.6) BS02 rna ? GO:0000028 ... P17291 19833919
    165058 4v5f:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165059 4v5f:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    165060 4v5f:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    165061 4v5f:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    165062 4v5f:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    165063 4v5f:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    165064 4v5f:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    165065 4v5f:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165066 4v5f:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    165067 4v5f:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    165068 4v5f:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    165069 4v5f:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165070 4v5f:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    165071 4v5f:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    165072 4v5f:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    165073 4v5f:AY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    165074 4v5f:AY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    165075 4v5f:AY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    165076 4v5f:AY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    165077 4v5f:AY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    165078 4v5f:AY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    165079 4v5f:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    165080 4v5f:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    165081 4v5f:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    165082 4v5f:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    165083 4v5f:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    165084 4v5f:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    165085 4v5f:B3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    165086 4v5f:B4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    165087 4v5f:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    165088 4v5f:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    165089 4v5f:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    165090 4v5f:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    165091 4v5f:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    165092 4v5f:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    165093 4v5f:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    165094 4v5f:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    165095 4v5f:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    165096 4v5f:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    165097 4v5f:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    165098 4v5f:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    165099 4v5f:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    165100 4v5f:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    165101 4v5f:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165102 4v5f:BK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    165103 4v5f:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    165104 4v5f:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    165105 4v5f:BO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    165106 4v5f:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    165107 4v5f:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    165108 4v5f:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    165109 4v5f:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    165110 4v5f:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    165111 4v5f:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    165112 4v5f:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    165113 4v5f:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    165114 4v5f:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    165115 4v5f:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    165116 4v5f:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    165117 4v5f:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833919
    165118 4v5f:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    165119 4v5f:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    165120 4v5f:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    165121 4v5f:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    165122 4v5f:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    165123 4v5f:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    165124 4v5f:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    165125 4v5f:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    165126 4v5f:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    165127 4v5f:CG (3.6) BS01 rna ? GO:0000028 ... P17291 19833919
    165128 4v5f:CG (3.6) BS02 rna ? GO:0000028 ... P17291 19833919
    165129 4v5f:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165130 4v5f:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    165131 4v5f:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833919
    165132 4v5f:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    165133 4v5f:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    165134 4v5f:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    165135 4v5f:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    165136 4v5f:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    165137 4v5f:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165138 4v5f:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    165139 4v5f:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    165140 4v5f:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833919
    165141 4v5f:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    165142 4v5f:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165143 4v5f:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    165144 4v5f:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    165145 4v5f:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    165146 4v5f:CY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    165147 4v5f:CY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    165148 4v5f:CY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    165149 4v5f:CY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    165150 4v5f:CY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    165151 4v5f:CY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    165152 4v5f:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    165153 4v5f:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    165154 4v5f:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    165155 4v5f:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    165156 4v5f:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833919
    165157 4v5f:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    165158 4v5f:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    165159 4v5f:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    165160 4v5f:D4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    165161 4v5f:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    165162 4v5f:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    165163 4v5f:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    165164 4v5f:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    165165 4v5f:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    165166 4v5f:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    165167 4v5f:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    165168 4v5f:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    165169 4v5f:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    165170 4v5f:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833919
    165171 4v5f:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    165172 4v5f:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    165173 4v5f:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    165174 4v5f:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    165175 4v5f:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    165176 4v5f:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    165177 4v5f:DK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    165178 4v5f:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    165179 4v5f:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    165180 4v5f:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    165181 4v5f:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    165182 4v5f:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    165183 4v5f:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    165184 4v5f:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    165185 4v5f:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    165186 4v5f:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    165187 4v5f:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    165188 4v5f:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    165189 4v5f:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    165190 4v5f:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    165191 4v5f:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    165192 4v5f:DX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833919
    165193 4v5f:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    165194 4v5f:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    165195 4v5f:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    165196 4v5g:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    165197 4v5g:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    165198 4v5g:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    165199 4v5g:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    165200 4v5g:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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