Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    164801 4v5d:BE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 19363482
    164802 4v5d:BF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 19363482
    164803 4v5d:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 19363482
    164804 4v5d:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 19363482
    164805 4v5d:BG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 19363482
    164806 4v5d:BH (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164807 4v5d:BI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 19363482
    164808 4v5d:BN (3.5) BS01 rna ? GO:0003729 ... P60488 19363482
    164809 4v5d:BO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 19363482
    164810 4v5d:BO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 19363482
    164811 4v5d:BP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 19363482
    164812 4v5d:BQ (3.5) BS01 rna ? GO:0000049 ... P60489 19363482
    164813 4v5d:BQ (3.5) BS02 rna ? GO:0000049 ... P60489 19363482
    164814 4v5d:BQ (3.5) BS03 rna ? GO:0000049 ... P60489 19363482
    164815 4v5d:BR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 19363482
    164816 4v5d:BR (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 19363482
    164817 4v5d:BS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 19363482
    164818 4v5d:BS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 19363482
    164819 4v5d:BT (3.5) BS01 rna ? GO:0003735 ... P60490 19363482
    164820 4v5d:BT (3.5) BS02 rna ? GO:0003735 ... P60490 19363482
    164821 4v5d:BU (3.5) BS01 rna ? GO:0000027 ... P60491 19363482
    164822 4v5d:BV (3.5) BS01 rna ? GO:0003723 ... P60492 19363482
    164823 4v5d:BW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 19363482
    164824 4v5d:BX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 19363482
    164825 4v5d:BX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 19363482
    164826 4v5d:BY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 19363482
    164827 4v5d:BZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 19363482
    164828 4v5d:BZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 19363482
    164829 4v5d:CB (3.5) BS01 rna ? GO:0003735 ... P80371 19363482
    164830 4v5d:CC (3.5) BS01 rna ? GO:0003676 ... P80372 19363482
    164831 4v5d:CD (3.5) BS01 rna ? GO:0003723 ... P80373 19363482
    164832 4v5d:CD (3.5) BS02 ZN ? GO:0003723 ... P80373 19363482
    164833 4v5d:CE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 19363482
    164834 4v5d:CE (3.5) BS02 MG ? GO:0003723 ... Q5SHQ5 19363482
    164835 4v5d:CF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 19363482
    164836 4v5d:CG (3.5) BS01 rna ? GO:0000028 ... P17291 19363482
    164837 4v5d:CG (3.5) BS02 rna ? GO:0000028 ... P17291 19363482
    164838 4v5d:CH (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164839 4v5d:CI (3.5) BS01 rna ? GO:0000049 ... P62669 19363482
    164840 4v5d:CI (3.5) BS02 rna ? GO:0000049 ... P62669 19363482
    164841 4v5d:CJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 19363482
    164842 4v5d:CK (3.5) BS01 rna ? GO:0003735 ... P80376 19363482
    164843 4v5d:CL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 19363482
    164844 4v5d:CM (3.5) BS01 rna ? GO:0000049 ... P80377 19363482
    164845 4v5d:CM (3.5) BS02 rna ? GO:0000049 ... P80377 19363482
    164846 4v5d:CN (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164847 4v5d:CN (3.5) BS02 ZN N/A GO:0003735 ... N/A 19363482
    164848 4v5d:CO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 19363482
    164849 4v5d:CO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 19363482
    164850 4v5d:CP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 19363482
    164851 4v5d:CQ (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164852 4v5d:CR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 19363482
    164853 4v5d:CS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 19363482
    164854 4v5d:CT (3.5) BS01 rna ? GO:0003723 ... P80380 19363482
    164855 4v5d:D0 (3.5) BS01 rna ? GO:0003735 ... P60493 19363482
    164856 4v5d:D0 (3.5) BS02 rna ? GO:0003735 ... P60493 19363482
    164857 4v5d:D0 (3.5) BS03 rna ? GO:0003735 ... P60493 19363482
    164858 4v5d:D1 (3.5) BS01 rna ? GO:0003735 ... P60494 19363482
    164859 4v5d:D1 (3.5) BS02 rna ? GO:0003735 ... P60494 19363482
    164860 4v5d:D1 (3.5) BS03 MG ? GO:0003735 ... P60494 19363482
    164861 4v5d:D2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 19363482
    164862 4v5d:D2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 19363482
    164863 4v5d:D2 (3.5) BS03 MG ? GO:0003735 ... Q5SHP6 19363482
    164864 4v5d:D3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 19363482
    164865 4v5d:D5 (3.5) BS01 rna ? GO:0003735 ... P80339 19363482
    164866 4v5d:D6 (3.5) BS01 rna ? GO:0000049 ... P35871 19363482
    164867 4v5d:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 19363482
    164868 4v5d:D7 (3.5) BS02 MG ? GO:0003735 ... P80340 19363482
    164869 4v5d:D8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 19363482
    164870 4v5d:D9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 19363482
    164871 4v5d:D9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 19363482
    164872 4v5d:DC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 19363482
    164873 4v5d:DD (3.5) BS01 rna ? GO:0002181 ... P60405 19363482
    164874 4v5d:DD (3.5) BS02 MG ? GO:0002181 ... P60405 19363482
    164875 4v5d:DE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 19363482
    164876 4v5d:DF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 19363482
    164877 4v5d:DF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 19363482
    164878 4v5d:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 19363482
    164879 4v5d:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 19363482
    164880 4v5d:DG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 19363482
    164881 4v5d:DH (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164882 4v5d:DI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 19363482
    164883 4v5d:DN (3.5) BS01 rna ? GO:0003729 ... P60488 19363482
    164884 4v5d:DO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 19363482
    164885 4v5d:DO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 19363482
    164886 4v5d:DP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 19363482
    164887 4v5d:DQ (3.5) BS01 rna ? GO:0000049 ... P60489 19363482
    164888 4v5d:DQ (3.5) BS02 rna ? GO:0000049 ... P60489 19363482
    164889 4v5d:DQ (3.5) BS03 rna ? GO:0000049 ... P60489 19363482
    164890 4v5d:DR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 19363482
    164891 4v5d:DR (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 19363482
    164892 4v5d:DS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 19363482
    164893 4v5d:DS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 19363482
    164894 4v5d:DT (3.5) BS01 rna ? GO:0003735 ... P60490 19363482
    164895 4v5d:DT (3.5) BS02 rna ? GO:0003735 ... P60490 19363482
    164896 4v5d:DU (3.5) BS01 rna ? GO:0000027 ... P60491 19363482
    164897 4v5d:DV (3.5) BS01 rna ? GO:0003723 ... P60492 19363482
    164898 4v5d:DV (3.5) BS02 MG ? GO:0003723 ... P60492 19363482
    164899 4v5d:DW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 19363482
    164900 4v5d:DX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 19363482
    164901 4v5d:DX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 19363482
    164902 4v5d:DY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 19363482
    164903 4v5d:DZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 19363482
    164904 4v5d:DZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 19363482
    164905 4v5e:AB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    164906 4v5e:AC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    164907 4v5e:AD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    164908 4v5e:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    164909 4v5e:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    164910 4v5e:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    164911 4v5e:AG (3.45) BS01 rna ? GO:0000028 ... P17291 18988853
    164912 4v5e:AG (3.45) BS02 rna ? GO:0000028 ... P17291 18988853
    164913 4v5e:AH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    164914 4v5e:AI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    164915 4v5e:AI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    164916 4v5e:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    164917 4v5e:AK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    164918 4v5e:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    164919 4v5e:AM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    164920 4v5e:AN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    164921 4v5e:AN (3.45) BS02 ZN ? GO:0003735 ... P0DOY6 18988853
    164922 4v5e:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    164923 4v5e:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    164924 4v5e:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    164925 4v5e:AQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    164926 4v5e:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    164927 4v5e:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    164928 4v5e:AT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    164929 4v5e:AY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    164930 4v5e:AY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    164931 4v5e:AY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    164932 4v5e:AY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    164933 4v5e:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    164934 4v5e:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    164935 4v5e:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    164936 4v5e:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    164937 4v5e:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    164938 4v5e:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 18988853
    164939 4v5e:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    164940 4v5e:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    164941 4v5e:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    164942 4v5e:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    164943 4v5e:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    164944 4v5e:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    164945 4v5e:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    164946 4v5e:BC (3.45) BS02 rna ? GO:0000049 ... Q5SLP7 18988853
    164947 4v5e:BD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    164948 4v5e:BD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    164949 4v5e:BD (3.45) BS03 MG ? GO:0002181 ... P60405 18988853
    164950 4v5e:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    164951 4v5e:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    164952 4v5e:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    164953 4v5e:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    164954 4v5e:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    164955 4v5e:BH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    164956 4v5e:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    164957 4v5e:BK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    164958 4v5e:BN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    164959 4v5e:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    164960 4v5e:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    164961 4v5e:BP (3.45) BS02 MG ? GO:0003735 ... Q5SHQ7 18988853
    164962 4v5e:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    164963 4v5e:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    164964 4v5e:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    164965 4v5e:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    164966 4v5e:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    164967 4v5e:BT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    164968 4v5e:BT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    164969 4v5e:BU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    164970 4v5e:BV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    164971 4v5e:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    164972 4v5e:BX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 18988853
    164973 4v5e:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    164974 4v5e:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    164975 4v5e:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    164976 4v5e:CB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    164977 4v5e:CC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    164978 4v5e:CD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    164979 4v5e:CD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    164980 4v5e:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    164981 4v5e:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    164982 4v5e:CG (3.45) BS01 rna ? GO:0000028 ... P17291 18988853
    164983 4v5e:CG (3.45) BS02 rna ? GO:0000028 ... P17291 18988853
    164984 4v5e:CH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    164985 4v5e:CI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    164986 4v5e:CI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    164987 4v5e:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    164988 4v5e:CK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    164989 4v5e:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    164990 4v5e:CL (3.45) BS02 MG ? GO:0000049 ... Q5SHN3 18988853
    164991 4v5e:CM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    164992 4v5e:CM (3.45) BS02 rna ? GO:0000049 ... P80377 18988853
    164993 4v5e:CN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    164994 4v5e:CN (3.45) BS02 MG ? GO:0003735 ... P0DOY6 18988853
    164995 4v5e:CN (3.45) BS03 ZN ? GO:0003735 ... P0DOY6 18988853
    164996 4v5e:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    164997 4v5e:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    164998 4v5e:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    164999 4v5e:CQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    165000 4v5e:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417