Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    164601 4v5b:DR (3.74) BS01 rna ? GO:0002181 ... P0A7T7 18288106
    164602 4v5b:DS (3.74) BS01 rna ? GO:0000028 ... P0A7U3 18288106
    164603 4v5b:DT (3.74) BS01 rna ? GO:0000028 ... P0A7U7 18288106
    164604 4v5b:DU (3.74) BS01 rna ? GO:0003735 ... P68680 18288106
    164605 4v5c:AB (3.3) BS01 rna ? GO:0003735 ... P80371 19363482
    164606 4v5c:AC (3.3) BS01 rna ? GO:0003676 ... P80372 19363482
    164607 4v5c:AD (3.3) BS01 rna ? GO:0003723 ... P80373 19363482
    164608 4v5c:AD (3.3) BS02 ZN ? GO:0003723 ... P80373 19363482
    164609 4v5c:AE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 19363482
    164610 4v5c:AF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 19363482
    164611 4v5c:AG (3.3) BS01 rna ? GO:0000028 ... P17291 19363482
    164612 4v5c:AG (3.3) BS02 rna ? GO:0000028 ... P17291 19363482
    164613 4v5c:AG (3.3) BS03 rna ? GO:0000028 ... P17291 19363482
    164614 4v5c:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164615 4v5c:AI (3.3) BS01 rna ? GO:0000049 ... P62669 19363482
    164616 4v5c:AJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 19363482
    164617 4v5c:AK (3.3) BS01 rna ? GO:0003735 ... P80376 19363482
    164618 4v5c:AL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 19363482
    164619 4v5c:AL (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 19363482
    164620 4v5c:AM (3.3) BS01 rna ? GO:0000049 ... P80377 19363482
    164621 4v5c:AM (3.3) BS02 rna ? GO:0000049 ... P80377 19363482
    164622 4v5c:AM (3.3) BS03 rna ? GO:0000049 ... P80377 19363482
    164623 4v5c:AN (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164624 4v5c:AN (3.3) BS02 ZN N/A GO:0003735 ... N/A 19363482
    164625 4v5c:AO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 19363482
    164626 4v5c:AO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 19363482
    164627 4v5c:AP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 19363482
    164628 4v5c:AQ (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164629 4v5c:AR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 19363482
    164630 4v5c:AS (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 19363482
    164631 4v5c:AT (3.3) BS01 rna ? GO:0003723 ... P80380 19363482
    164632 4v5c:B0 (3.3) BS01 rna ? GO:0003735 ... P60493 19363482
    164633 4v5c:B0 (3.3) BS02 rna ? GO:0003735 ... P60493 19363482
    164634 4v5c:B0 (3.3) BS03 rna ? GO:0003735 ... P60493 19363482
    164635 4v5c:B1 (3.3) BS01 rna ? GO:0003735 ... P60494 19363482
    164636 4v5c:B2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 19363482
    164637 4v5c:B2 (3.3) BS02 MG ? GO:0003735 ... Q5SHP6 19363482
    164638 4v5c:B2 (3.3) BS03 MG ? GO:0003735 ... Q5SHP6 19363482
    164639 4v5c:B3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 19363482
    164640 4v5c:B3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 19363482
    164641 4v5c:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 19363482
    164642 4v5c:B6 (3.3) BS01 rna ? GO:0000049 ... P35871 19363482
    164643 4v5c:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 19363482
    164644 4v5c:B7 (3.3) BS02 MG ? GO:0003735 ... P80340 19363482
    164645 4v5c:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 19363482
    164646 4v5c:B9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 19363482
    164647 4v5c:B9 (3.3) BS02 ZN ? GO:0003735 ... Q5SHR2 19363482
    164648 4v5c:BC (3.3) BS01 rna ? GO:0000049 ... Q5SLP7 19363482
    164649 4v5c:BC (3.3) BS02 rna ? GO:0000049 ... Q5SLP7 19363482
    164650 4v5c:BD (3.3) BS01 rna ? GO:0002181 ... P60405 19363482
    164651 4v5c:BD (3.3) BS02 rna ? GO:0002181 ... P60405 19363482
    164652 4v5c:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 19363482
    164653 4v5c:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 19363482
    164654 4v5c:BF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 19363482
    164655 4v5c:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 19363482
    164656 4v5c:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 19363482
    164657 4v5c:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 19363482
    164658 4v5c:BH (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164659 4v5c:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 19363482
    164660 4v5c:BN (3.3) BS01 rna ? GO:0003729 ... P60488 19363482
    164661 4v5c:BN (3.3) BS02 MG ? GO:0003729 ... P60488 19363482
    164662 4v5c:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 19363482
    164663 4v5c:BO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 19363482
    164664 4v5c:BP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 19363482
    164665 4v5c:BP (3.3) BS02 MG ? GO:0003735 ... Q5SHQ7 19363482
    164666 4v5c:BQ (3.3) BS01 rna ? GO:0000049 ... P60489 19363482
    164667 4v5c:BR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 19363482
    164668 4v5c:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 19363482
    164669 4v5c:BS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 19363482
    164670 4v5c:BT (3.3) BS01 rna ? GO:0003735 ... P60490 19363482
    164671 4v5c:BT (3.3) BS02 rna ? GO:0003735 ... P60490 19363482
    164672 4v5c:BU (3.3) BS01 rna ? GO:0000027 ... P60491 19363482
    164673 4v5c:BV (3.3) BS01 rna ? GO:0003723 ... P60492 19363482
    164674 4v5c:BV (3.3) BS02 MG ? GO:0003723 ... P60492 19363482
    164675 4v5c:BV (3.3) BS03 MG ? GO:0003723 ... P60492 19363482
    164676 4v5c:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 19363482
    164677 4v5c:BX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 19363482
    164678 4v5c:BX (3.3) BS02 MG ? GO:0000027 ... Q5SHP0 19363482
    164679 4v5c:BY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 19363482
    164680 4v5c:BZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 19363482
    164681 4v5c:BZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 19363482
    164682 4v5c:CB (3.3) BS01 rna ? GO:0003735 ... P80371 19363482
    164683 4v5c:CC (3.3) BS01 rna ? GO:0003676 ... P80372 19363482
    164684 4v5c:CD (3.3) BS01 rna ? GO:0003723 ... P80373 19363482
    164685 4v5c:CD (3.3) BS02 ZN ? GO:0003723 ... P80373 19363482
    164686 4v5c:CE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 19363482
    164687 4v5c:CF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 19363482
    164688 4v5c:CG (3.3) BS01 rna ? GO:0000028 ... P17291 19363482
    164689 4v5c:CG (3.3) BS02 rna ? GO:0000028 ... P17291 19363482
    164690 4v5c:CG (3.3) BS03 rna ? GO:0000028 ... P17291 19363482
    164691 4v5c:CH (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164692 4v5c:CI (3.3) BS01 rna ? GO:0000049 ... P62669 19363482
    164693 4v5c:CJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 19363482
    164694 4v5c:CK (3.3) BS01 rna ? GO:0003735 ... P80376 19363482
    164695 4v5c:CL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 19363482
    164696 4v5c:CM (3.3) BS01 rna ? GO:0000049 ... P80377 19363482
    164697 4v5c:CM (3.3) BS02 rna ? GO:0000049 ... P80377 19363482
    164698 4v5c:CM (3.3) BS03 rna ? GO:0000049 ... P80377 19363482
    164699 4v5c:CN (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164700 4v5c:CN (3.3) BS02 ZN N/A GO:0003735 ... N/A 19363482
    164701 4v5c:CO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 19363482
    164702 4v5c:CO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 19363482
    164703 4v5c:CP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 19363482
    164704 4v5c:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164705 4v5c:CR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 19363482
    164706 4v5c:CS (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 19363482
    164707 4v5c:CT (3.3) BS01 rna ? GO:0003723 ... P80380 19363482
    164708 4v5c:D0 (3.3) BS01 rna ? GO:0003735 ... P60493 19363482
    164709 4v5c:D0 (3.3) BS02 rna ? GO:0003735 ... P60493 19363482
    164710 4v5c:D0 (3.3) BS03 rna ? GO:0003735 ... P60493 19363482
    164711 4v5c:D1 (3.3) BS01 rna ? GO:0003735 ... P60494 19363482
    164712 4v5c:D1 (3.3) BS02 MG ? GO:0003735 ... P60494 19363482
    164713 4v5c:D2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 19363482
    164714 4v5c:D2 (3.3) BS02 MG ? GO:0003735 ... Q5SHP6 19363482
    164715 4v5c:D3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 19363482
    164716 4v5c:D3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 19363482
    164717 4v5c:D5 (3.3) BS01 rna ? GO:0003735 ... P80339 19363482
    164718 4v5c:D6 (3.3) BS01 rna ? GO:0000049 ... P35871 19363482
    164719 4v5c:D7 (3.3) BS01 rna ? GO:0003735 ... P80340 19363482
    164720 4v5c:D7 (3.3) BS02 MG ? GO:0003735 ... P80340 19363482
    164721 4v5c:D8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 19363482
    164722 4v5c:D9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 19363482
    164723 4v5c:D9 (3.3) BS02 ZN ? GO:0003735 ... Q5SHR2 19363482
    164724 4v5c:DC (3.3) BS01 rna ? GO:0000049 ... Q5SLP7 19363482
    164725 4v5c:DC (3.3) BS02 rna ? GO:0000049 ... Q5SLP7 19363482
    164726 4v5c:DD (3.3) BS01 rna ? GO:0002181 ... P60405 19363482
    164727 4v5c:DD (3.3) BS02 MG ? GO:0002181 ... P60405 19363482
    164728 4v5c:DE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 19363482
    164729 4v5c:DF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 19363482
    164730 4v5c:DF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 19363482
    164731 4v5c:DG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 19363482
    164732 4v5c:DG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 19363482
    164733 4v5c:DG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 19363482
    164734 4v5c:DH (3.3) BS01 rna N/A GO:0003735 ... N/A 19363482
    164735 4v5c:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 19363482
    164736 4v5c:DN (3.3) BS01 rna ? GO:0003729 ... P60488 19363482
    164737 4v5c:DN (3.3) BS02 MG ? GO:0003729 ... P60488 19363482
    164738 4v5c:DO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 19363482
    164739 4v5c:DO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 19363482
    164740 4v5c:DP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 19363482
    164741 4v5c:DQ (3.3) BS01 rna ? GO:0000049 ... P60489 19363482
    164742 4v5c:DR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 19363482
    164743 4v5c:DS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 19363482
    164744 4v5c:DS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 19363482
    164745 4v5c:DT (3.3) BS01 rna ? GO:0003735 ... P60490 19363482
    164746 4v5c:DT (3.3) BS02 rna ? GO:0003735 ... P60490 19363482
    164747 4v5c:DU (3.3) BS01 rna ? GO:0000027 ... P60491 19363482
    164748 4v5c:DV (3.3) BS01 rna ? GO:0003723 ... P60492 19363482
    164749 4v5c:DV (3.3) BS02 MG ? GO:0003723 ... P60492 19363482
    164750 4v5c:DW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 19363482
    164751 4v5c:DX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 19363482
    164752 4v5c:DX (3.3) BS02 MG ? GO:0000027 ... Q5SHP0 19363482
    164753 4v5c:DY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 19363482
    164754 4v5c:DZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 19363482
    164755 4v5c:DZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 19363482
    164756 4v5c:DZ (3.3) BS03 rna ? GO:0003723 ... Q5SHZ1 19363482
    164757 4v5d:AB (3.5) BS01 rna ? GO:0003735 ... P80371 19363482
    164758 4v5d:AC (3.5) BS01 rna ? GO:0003676 ... P80372 19363482
    164759 4v5d:AD (3.5) BS01 rna ? GO:0003723 ... P80373 19363482
    164760 4v5d:AD (3.5) BS02 ZN ? GO:0003723 ... P80373 19363482
    164761 4v5d:AE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 19363482
    164762 4v5d:AE (3.5) BS02 MG ? GO:0003723 ... Q5SHQ5 19363482
    164763 4v5d:AF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 19363482
    164764 4v5d:AG (3.5) BS01 rna ? GO:0000028 ... P17291 19363482
    164765 4v5d:AG (3.5) BS02 rna ? GO:0000028 ... P17291 19363482
    164766 4v5d:AH (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164767 4v5d:AI (3.5) BS01 rna ? GO:0000049 ... P62669 19363482
    164768 4v5d:AI (3.5) BS02 rna ? GO:0000049 ... P62669 19363482
    164769 4v5d:AJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 19363482
    164770 4v5d:AK (3.5) BS01 rna ? GO:0003735 ... P80376 19363482
    164771 4v5d:AL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 19363482
    164772 4v5d:AM (3.5) BS01 rna ? GO:0000049 ... P80377 19363482
    164773 4v5d:AM (3.5) BS02 rna ? GO:0000049 ... P80377 19363482
    164774 4v5d:AM (3.5) BS03 rna ? GO:0000049 ... P80377 19363482
    164775 4v5d:AM (3.5) BS04 rna ? GO:0000049 ... P80377 19363482
    164776 4v5d:AN (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164777 4v5d:AN (3.5) BS02 ZN N/A GO:0003735 ... N/A 19363482
    164778 4v5d:AO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 19363482
    164779 4v5d:AO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 19363482
    164780 4v5d:AP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 19363482
    164781 4v5d:AQ (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    164782 4v5d:AR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 19363482
    164783 4v5d:AS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 19363482
    164784 4v5d:AT (3.5) BS01 rna ? GO:0003723 ... P80380 19363482
    164785 4v5d:B0 (3.5) BS01 rna ? GO:0003735 ... P60493 19363482
    164786 4v5d:B0 (3.5) BS02 rna ? GO:0003735 ... P60493 19363482
    164787 4v5d:B0 (3.5) BS03 rna ? GO:0003735 ... P60493 19363482
    164788 4v5d:B1 (3.5) BS01 rna ? GO:0003735 ... P60494 19363482
    164789 4v5d:B2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 19363482
    164790 4v5d:B2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 19363482
    164791 4v5d:B3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 19363482
    164792 4v5d:B5 (3.5) BS01 rna ? GO:0003735 ... P80339 19363482
    164793 4v5d:B6 (3.5) BS01 rna ? GO:0000049 ... P35871 19363482
    164794 4v5d:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 19363482
    164795 4v5d:B8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 19363482
    164796 4v5d:B9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 19363482
    164797 4v5d:BC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 19363482
    164798 4v5d:BD (3.5) BS01 rna ? GO:0002181 ... P60405 19363482
    164799 4v5d:BD (3.5) BS02 MG ? GO:0002181 ... P60405 19363482
    164800 4v5d:BD (3.5) BS03 MG ? GO:0002181 ... P60405 19363482
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417