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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    164201 4v57:AG (3.5) BS01 rna ? GO:0000028 ... P02359 17696316
    164202 4v57:AH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    164203 4v57:AI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    164204 4v57:AJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    164205 4v57:AK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    164206 4v57:AL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    164207 4v57:AM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    164208 4v57:AN (3.5) BS01 rna ? GO:0000028 ... P0AG59 17696316
    164209 4v57:AO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    164210 4v57:AO (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    164211 4v57:AP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    164212 4v57:AQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 17696316
    164213 4v57:AR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    164214 4v57:AS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    164215 4v57:AT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    164216 4v57:AU (3.5) BS01 rna ? GO:0000028 ... P68679 17696316
    164217 4v57:B0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    164218 4v57:B1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    164219 4v57:B2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    164220 4v57:B3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    164221 4v57:B4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    164222 4v57:B4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    164223 4v57:BC (3.5) BS01 rna ? GO:0000027 ... P60422 17696316
    164224 4v57:BD (3.5) BS01 rna ? GO:0000027 ... P60438 17696316
    164225 4v57:BE (3.5) BS01 rna ? GO:0001070 ... P60723 17696316
    164226 4v57:BF (3.5) BS01 rna ? GO:0000027 ... P62399 17696316
    164227 4v57:BF (3.5) BS02 rna ? GO:0000027 ... P62399 17696316
    164228 4v57:BG (3.5) BS01 rna ? GO:0000027 ... P0AG55 17696316
    164229 4v57:BH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    164230 4v57:BH (3.5) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    164231 4v57:BI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    164232 4v57:BJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 17696316
    164233 4v57:BK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    164234 4v57:BK (3.5) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    164235 4v57:BL (3.5) BS01 rna ? GO:0002181 ... P02413 17696316
    164236 4v57:BM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    164237 4v57:BM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    164238 4v57:BN (3.5) BS01 rna ? GO:0000027 ... P0AG44 17696316
    164239 4v57:BO (3.5) BS01 rna ? GO:0002181 ... P0C018 17696316
    164240 4v57:BO (3.5) BS02 rna ? GO:0002181 ... P0C018 17696316
    164241 4v57:BP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    164242 4v57:BP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    164243 4v57:BQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    164244 4v57:BR (3.5) BS01 rna ? GO:0002181 ... P0AG48 17696316
    164245 4v57:BS (3.5) BS01 rna ? GO:0002181 ... P61175 17696316
    164246 4v57:BT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    164247 4v57:BU (3.5) BS01 rna ? GO:0000027 ... P60624 17696316
    164248 4v57:BV (3.5) BS01 rna ? GO:0000027 ... P68919 17696316
    164249 4v57:BV (3.5) BS02 rna ? GO:0000027 ... P68919 17696316
    164250 4v57:BW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    164251 4v57:BW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    164252 4v57:BX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    164253 4v57:BY (3.5) BS01 rna ? GO:0000027 ... P0AG51 17696316
    164254 4v57:BY (3.5) BS02 rna ? GO:0000027 ... P0AG51 17696316
    164255 4v57:BZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    164256 4v57:CB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    164257 4v57:CC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    164258 4v57:CD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    164259 4v57:CE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    164260 4v57:CF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316
    164261 4v57:CG (3.5) BS01 rna ? GO:0000028 ... P02359 17696316
    164262 4v57:CH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    164263 4v57:CI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    164264 4v57:CJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    164265 4v57:CJ (3.5) BS02 rna ? GO:0000049 ... P0A7R5 17696316
    164266 4v57:CK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    164267 4v57:CL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    164268 4v57:CM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    164269 4v57:CN (3.5) BS01 rna ? GO:0000028 ... P0AG59 17696316
    164270 4v57:CO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    164271 4v57:CP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    164272 4v57:CQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 17696316
    164273 4v57:CR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    164274 4v57:CS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    164275 4v57:CT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    164276 4v57:CU (3.5) BS01 rna ? GO:0000028 ... P68679 17696316
    164277 4v57:D0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    164278 4v57:D1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    164279 4v57:D2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    164280 4v57:D3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    164281 4v57:D4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    164282 4v57:D4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    164283 4v57:DC (3.5) BS01 rna ? GO:0000027 ... P60422 17696316
    164284 4v57:DD (3.5) BS01 rna ? GO:0000027 ... P60438 17696316
    164285 4v57:DE (3.5) BS01 rna ? GO:0001070 ... P60723 17696316
    164286 4v57:DF (3.5) BS01 rna ? GO:0000027 ... P62399 17696316
    164287 4v57:DF (3.5) BS02 rna ? GO:0000027 ... P62399 17696316
    164288 4v57:DG (3.5) BS01 rna ? GO:0000027 ... P0AG55 17696316
    164289 4v57:DH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    164290 4v57:DI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    164291 4v57:DJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 17696316
    164292 4v57:DK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    164293 4v57:DK (3.5) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    164294 4v57:DL (3.5) BS01 rna ? GO:0002181 ... P02413 17696316
    164295 4v57:DM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    164296 4v57:DM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    164297 4v57:DN (3.5) BS01 rna ? GO:0000027 ... P0AG44 17696316
    164298 4v57:DO (3.5) BS01 rna ? GO:0002181 ... P0C018 17696316
    164299 4v57:DO (3.5) BS02 rna ? GO:0002181 ... P0C018 17696316
    164300 4v57:DP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    164301 4v57:DP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    164302 4v57:DQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    164303 4v57:DR (3.5) BS01 rna ? GO:0002181 ... P0AG48 17696316
    164304 4v57:DS (3.5) BS01 rna ? GO:0002181 ... P61175 17696316
    164305 4v57:DT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    164306 4v57:DU (3.5) BS01 rna ? GO:0000027 ... P60624 17696316
    164307 4v57:DV (3.5) BS01 rna ? GO:0000027 ... P68919 17696316
    164308 4v57:DW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    164309 4v57:DW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    164310 4v57:DX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    164311 4v57:DY (3.5) BS01 rna ? GO:0000027 ... P0AG51 17696316
    164312 4v57:DY (3.5) BS02 rna ? GO:0000027 ... P0AG51 17696316
    164313 4v57:DZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    164314 4v58:G (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164315 4v58:H (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164316 4v58:I (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164317 4v58:J (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164318 4v58:K (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164319 4v58:L (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164320 4v59:A (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164321 4v59:B (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164322 4v59:C (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164323 4v59:D (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164324 4v59:E (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164325 4v59:F (3.1) BS01 NAP N/A GO:0000287 ... N/A 17431175
    164326 4v59:G (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164327 4v59:G (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164328 4v59:H (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164329 4v59:H (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164330 4v59:I (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164331 4v59:I (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164332 4v59:J (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164333 4v59:J (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164334 4v59:K (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164335 4v59:K (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164336 4v59:L (3.1) BS01 FMN N/A GO:0004312 ... N/A 17431175
    164337 4v59:L (3.1) BS02 NAP N/A GO:0004312 ... N/A 17431175
    164338 4v5a:AB (3.5) BS01 rna ? GO:0003735 ... P80371 17660830
    164339 4v5a:AC (3.5) BS01 rna ? GO:0003676 ... P80372 17660830
    164340 4v5a:AD (3.5) BS01 rna ? GO:0003723 ... P80373 17660830
    164341 4v5a:AD (3.5) BS02 ZN ? GO:0003723 ... P80373 17660830
    164342 4v5a:AE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 17660830
    164343 4v5a:AF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 17660830
    164344 4v5a:AG (3.5) BS01 rna ? GO:0000028 ... P17291 17660830
    164345 4v5a:AG (3.5) BS02 rna ? GO:0000028 ... P17291 17660830
    164346 4v5a:AH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    164347 4v5a:AI (3.5) BS01 rna ? GO:0000049 ... P62669 17660830
    164348 4v5a:AJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 17660830
    164349 4v5a:AK (3.5) BS01 rna ? GO:0003735 ... P80376 17660830
    164350 4v5a:AL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 17660830
    164351 4v5a:AL (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 17660830
    164352 4v5a:AL (3.5) BS03 MG ? GO:0000049 ... Q5SHN3 17660830
    164353 4v5a:AM (3.5) BS01 rna ? GO:0000049 ... P80377 17660830
    164354 4v5a:AM (3.5) BS02 MG ? GO:0000049 ... P80377 17660830
    164355 4v5a:AN (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    164356 4v5a:AN (3.5) BS02 ZN N/A GO:0003735 ... N/A 17660830
    164357 4v5a:AO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 17660830
    164358 4v5a:AP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 17660830
    164359 4v5a:AQ (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    164360 4v5a:AR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 17660830
    164361 4v5a:AS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 17660830
    164362 4v5a:AT (3.5) BS01 rna ? GO:0003723 ... P80380 17660830
    164363 4v5a:AY (3.5) BS01 rna ? GO:0005737 ... Q9WX76 17660830
    164364 4v5a:B0 (3.5) BS01 rna ? GO:0003735 ... P60493 17660830
    164365 4v5a:B1 (3.5) BS01 rna ? GO:0003735 ... P60494 17660830
    164366 4v5a:B1 (3.5) BS02 MG ? GO:0003735 ... P60494 17660830
    164367 4v5a:B2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 17660830
    164368 4v5a:B2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 17660830
    164369 4v5a:B3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 17660830
    164370 4v5a:B3 (3.5) BS02 MG ? GO:0003735 ... Q5SHQ6 17660830
    164371 4v5a:B4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 17660830
    164372 4v5a:B5 (3.5) BS01 rna ? GO:0003735 ... P80339 17660830
    164373 4v5a:B6 (3.5) BS01 rna ? GO:0000049 ... P35871 17660830
    164374 4v5a:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 17660830
    164375 4v5a:B7 (3.5) BS02 MG ? GO:0003735 ... P80340 17660830
    164376 4v5a:B8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 17660830
    164377 4v5a:BC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 17660830
    164378 4v5a:BD (3.5) BS01 rna ? GO:0002181 ... P60405 17660830
    164379 4v5a:BD (3.5) BS02 MG ? GO:0002181 ... P60405 17660830
    164380 4v5a:BD (3.5) BS03 MG ? GO:0002181 ... P60405 17660830
    164381 4v5a:BE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 17660830
    164382 4v5a:BE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 17660830
    164383 4v5a:BF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 17660830
    164384 4v5a:BF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 17660830
    164385 4v5a:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 17660830
    164386 4v5a:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 17660830
    164387 4v5a:BH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    164388 4v5a:BI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 17660830
    164389 4v5a:BN (3.5) BS01 rna ? GO:0003729 ... P60488 17660830
    164390 4v5a:BN (3.5) BS02 MG ? GO:0003729 ... P60488 17660830
    164391 4v5a:BN (3.5) BS03 MG ? GO:0003729 ... P60488 17660830
    164392 4v5a:BN (3.5) BS04 MG ? GO:0003729 ... P60488 17660830
    164393 4v5a:BO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 17660830
    164394 4v5a:BO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 17660830
    164395 4v5a:BP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 17660830
    164396 4v5a:BP (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 17660830
    164397 4v5a:BP (3.5) BS03 MG ? GO:0003735 ... Q5SHQ7 17660830
    164398 4v5a:BQ (3.5) BS01 rna ? GO:0000049 ... P60489 17660830
    164399 4v5a:BQ (3.5) BS02 rna ? GO:0000049 ... P60489 17660830
    164400 4v5a:BR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 17660830
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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