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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    164001 4v55:BO (4.0) BS02 rna ? GO:0002181 ... P0C018 17660832
    164002 4v55:BP (4.0) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    164003 4v55:BP (4.0) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    164004 4v55:BQ (4.0) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    164005 4v55:BR (4.0) BS01 rna ? GO:0002181 ... P0AG48 17660832
    164006 4v55:BS (4.0) BS01 rna ? GO:0002181 ... P61175 17660832
    164007 4v55:BT (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    164008 4v55:BU (4.0) BS01 rna ? GO:0000027 ... P60624 17660832
    164009 4v55:BV (4.0) BS01 rna ? GO:0000027 ... P68919 17660832
    164010 4v55:BV (4.0) BS02 rna ? GO:0000027 ... P68919 17660832
    164011 4v55:BW (4.0) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    164012 4v55:BW (4.0) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    164013 4v55:BX (4.0) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    164014 4v55:BY (4.0) BS01 rna ? GO:0000027 ... P0AG51 17660832
    164015 4v55:BY (4.0) BS02 rna ? GO:0000027 ... P0AG51 17660832
    164016 4v55:BZ (4.0) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    164017 4v55:CB (4.0) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    164018 4v55:CC (4.0) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    164019 4v55:CD (4.0) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    164020 4v55:CE (4.0) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    164021 4v55:CF (4.0) BS01 rna ? GO:0002181 ... P02358 17660832
    164022 4v55:CG (4.0) BS01 rna ? GO:0000028 ... P02359 17660832
    164023 4v55:CH (4.0) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    164024 4v55:CI (4.0) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    164025 4v55:CJ (4.0) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    164026 4v55:CK (4.0) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    164027 4v55:CL (4.0) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    164028 4v55:CM (4.0) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    164029 4v55:CN (4.0) BS01 rna ? GO:0000028 ... P0AG59 17660832
    164030 4v55:CO (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    164031 4v55:CO (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    164032 4v55:CP (4.0) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    164033 4v55:CQ (4.0) BS01 rna ? GO:0000028 ... P0AG63 17660832
    164034 4v55:CR (4.0) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    164035 4v55:CS (4.0) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    164036 4v55:CT (4.0) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    164037 4v55:CU (4.0) BS01 rna ? GO:0000028 ... P68679 17660832
    164038 4v55:D0 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    164039 4v55:D1 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    164040 4v55:D2 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    164041 4v55:D3 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    164042 4v55:D4 (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    164043 4v55:D4 (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    164044 4v55:D6 (4.0) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    164045 4v55:DC (4.0) BS01 rna ? GO:0000027 ... P60422 17660832
    164046 4v55:DD (4.0) BS01 rna ? GO:0000027 ... P60438 17660832
    164047 4v55:DE (4.0) BS01 rna ? GO:0001070 ... P60723 17660832
    164048 4v55:DF (4.0) BS01 rna ? GO:0000027 ... P62399 17660832
    164049 4v55:DF (4.0) BS02 rna ? GO:0000027 ... P62399 17660832
    164050 4v55:DG (4.0) BS01 rna ? GO:0000027 ... P0AG55 17660832
    164051 4v55:DH (4.0) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    164052 4v55:DI (4.0) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    164053 4v55:DJ (4.0) BS01 rna ? GO:0002181 ... P0AA10 17660832
    164054 4v55:DK (4.0) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    164055 4v55:DK (4.0) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    164056 4v55:DL (4.0) BS01 rna ? GO:0002181 ... P02413 17660832
    164057 4v55:DM (4.0) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    164058 4v55:DM (4.0) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    164059 4v55:DN (4.0) BS01 rna ? GO:0000027 ... P0AG44 17660832
    164060 4v55:DO (4.0) BS01 rna ? GO:0002181 ... P0C018 17660832
    164061 4v55:DO (4.0) BS02 rna ? GO:0002181 ... P0C018 17660832
    164062 4v55:DP (4.0) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    164063 4v55:DP (4.0) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    164064 4v55:DQ (4.0) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    164065 4v55:DR (4.0) BS01 rna ? GO:0002181 ... P0AG48 17660832
    164066 4v55:DS (4.0) BS01 rna ? GO:0002181 ... P61175 17660832
    164067 4v55:DT (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    164068 4v55:DU (4.0) BS01 rna ? GO:0000027 ... P60624 17660832
    164069 4v55:DV (4.0) BS01 rna ? GO:0000027 ... P68919 17660832
    164070 4v55:DW (4.0) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    164071 4v55:DW (4.0) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    164072 4v55:DX (4.0) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    164073 4v55:DY (4.0) BS01 rna ? GO:0000027 ... P0AG51 17660832
    164074 4v55:DY (4.0) BS02 rna ? GO:0000027 ... P0AG51 17660832
    164075 4v55:DZ (4.0) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    164076 4v56:AB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    164077 4v56:AC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    164078 4v56:AD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    164079 4v56:AE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    164080 4v56:AE (3.93) BS02 SCM ? GO:0000028 ... P0A7W1 17696316
    164081 4v56:AF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    164082 4v56:AG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    164083 4v56:AH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    164084 4v56:AI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    164085 4v56:AJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    164086 4v56:AK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    164087 4v56:AL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    164088 4v56:AM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    164089 4v56:AN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    164090 4v56:AO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    164091 4v56:AO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    164092 4v56:AP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    164093 4v56:AQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    164094 4v56:AR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    164095 4v56:AS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    164096 4v56:AT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    164097 4v56:AU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    164098 4v56:B0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    164099 4v56:B1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    164100 4v56:B2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    164101 4v56:B3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    164102 4v56:B4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    164103 4v56:B4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    164104 4v56:BC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    164105 4v56:BD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    164106 4v56:BE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    164107 4v56:BF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    164108 4v56:BF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    164109 4v56:BG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    164110 4v56:BH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    164111 4v56:BH (3.93) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    164112 4v56:BI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    164113 4v56:BJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    164114 4v56:BK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    164115 4v56:BK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    164116 4v56:BL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    164117 4v56:BM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    164118 4v56:BM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    164119 4v56:BN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    164120 4v56:BO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    164121 4v56:BO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    164122 4v56:BP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    164123 4v56:BP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    164124 4v56:BQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    164125 4v56:BR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    164126 4v56:BS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    164127 4v56:BT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    164128 4v56:BU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    164129 4v56:BV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    164130 4v56:BV (3.93) BS02 rna ? GO:0000027 ... P68919 17696316
    164131 4v56:BW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    164132 4v56:BW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    164133 4v56:BX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    164134 4v56:BY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    164135 4v56:BY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    164136 4v56:BZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    164137 4v56:CB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    164138 4v56:CC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    164139 4v56:CD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    164140 4v56:CE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    164141 4v56:CF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    164142 4v56:CG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    164143 4v56:CH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    164144 4v56:CI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    164145 4v56:CJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    164146 4v56:CJ (3.93) BS02 rna ? GO:0000049 ... P0A7R5 17696316
    164147 4v56:CK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    164148 4v56:CL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    164149 4v56:CM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    164150 4v56:CN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    164151 4v56:CO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    164152 4v56:CO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    164153 4v56:CP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    164154 4v56:CQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    164155 4v56:CR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    164156 4v56:CS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    164157 4v56:CT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    164158 4v56:CU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    164159 4v56:D0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    164160 4v56:D1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    164161 4v56:D2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    164162 4v56:D3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    164163 4v56:D4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    164164 4v56:D4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    164165 4v56:DC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    164166 4v56:DD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    164167 4v56:DE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    164168 4v56:DF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    164169 4v56:DF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    164170 4v56:DG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    164171 4v56:DH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    164172 4v56:DI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    164173 4v56:DJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    164174 4v56:DK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    164175 4v56:DK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    164176 4v56:DL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    164177 4v56:DM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    164178 4v56:DM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    164179 4v56:DN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    164180 4v56:DO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    164181 4v56:DO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    164182 4v56:DP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    164183 4v56:DP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    164184 4v56:DQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    164185 4v56:DR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    164186 4v56:DS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    164187 4v56:DT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    164188 4v56:DU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    164189 4v56:DV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    164190 4v56:DW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    164191 4v56:DW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    164192 4v56:DX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    164193 4v56:DY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    164194 4v56:DY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    164195 4v56:DZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    164196 4v57:AB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    164197 4v57:AC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    164198 4v57:AD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    164199 4v57:AE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    164200 4v57:AF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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