Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163801 4v53:D1 (3.54) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163802 4v53:D2 (3.54) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163803 4v53:D3 (3.54) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163804 4v53:D4 (3.54) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163805 4v53:D4 (3.54) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163806 4v53:DC (3.54) BS01 rna ? GO:0000027 ... P60422 17660832
    163807 4v53:DD (3.54) BS01 rna ? GO:0000027 ... P60438 17660832
    163808 4v53:DE (3.54) BS01 rna ? GO:0001070 ... P60723 17660832
    163809 4v53:DF (3.54) BS01 rna ? GO:0000027 ... P62399 17660832
    163810 4v53:DF (3.54) BS02 rna ? GO:0000027 ... P62399 17660832
    163811 4v53:DG (3.54) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163812 4v53:DH (3.54) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163813 4v53:DI (3.54) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163814 4v53:DJ (3.54) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163815 4v53:DK (3.54) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163816 4v53:DL (3.54) BS01 rna ? GO:0002181 ... P02413 17660832
    163817 4v53:DM (3.54) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163818 4v53:DM (3.54) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163819 4v53:DN (3.54) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163820 4v53:DO (3.54) BS01 rna ? GO:0002181 ... P0C018 17660832
    163821 4v53:DO (3.54) BS02 rna ? GO:0002181 ... P0C018 17660832
    163822 4v53:DP (3.54) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163823 4v53:DP (3.54) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163824 4v53:DQ (3.54) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163825 4v53:DR (3.54) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163826 4v53:DS (3.54) BS01 rna ? GO:0002181 ... P61175 17660832
    163827 4v53:DT (3.54) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163828 4v53:DU (3.54) BS01 rna ? GO:0000027 ... P60624 17660832
    163829 4v53:DV (3.54) BS01 rna ? GO:0000027 ... P68919 17660832
    163830 4v53:DW (3.54) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163831 4v53:DW (3.54) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163832 4v53:DX (3.54) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163833 4v53:DY (3.54) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163834 4v53:DY (3.54) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163835 4v53:DZ (3.54) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163836 4v54:AB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163837 4v54:AC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163838 4v54:AD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163839 4v54:AE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163840 4v54:AF (3.3) BS01 rna ? GO:0002181 ... P02358 17660832
    163841 4v54:AG (3.3) BS01 rna ? GO:0000028 ... P02359 17660832
    163842 4v54:AH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163843 4v54:AI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163844 4v54:AJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163845 4v54:AK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163846 4v54:AL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163847 4v54:AM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163848 4v54:AN (3.3) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163849 4v54:AO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163850 4v54:AO (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163851 4v54:AP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163852 4v54:AQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163853 4v54:AR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163854 4v54:AS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163855 4v54:AT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163856 4v54:AU (3.3) BS01 rna ? GO:0000028 ... P68679 17660832
    163857 4v54:B0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163858 4v54:B1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163859 4v54:B2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163860 4v54:B3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163861 4v54:B4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163862 4v54:B4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163863 4v54:B6 (3.3) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    163864 4v54:BC (3.3) BS01 rna ? GO:0000027 ... P60422 17660832
    163865 4v54:BD (3.3) BS01 rna ? GO:0000027 ... P60438 17660832
    163866 4v54:BE (3.3) BS01 rna ? GO:0001070 ... P60723 17660832
    163867 4v54:BF (3.3) BS01 rna ? GO:0000027 ... P62399 17660832
    163868 4v54:BF (3.3) BS02 rna ? GO:0000027 ... P62399 17660832
    163869 4v54:BG (3.3) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163870 4v54:BH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163871 4v54:BH (3.3) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    163872 4v54:BI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163873 4v54:BJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163874 4v54:BK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163875 4v54:BK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    163876 4v54:BL (3.3) BS01 rna ? GO:0002181 ... P02413 17660832
    163877 4v54:BM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163878 4v54:BM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163879 4v54:BN (3.3) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163880 4v54:BO (3.3) BS01 rna ? GO:0002181 ... P0C018 17660832
    163881 4v54:BO (3.3) BS02 rna ? GO:0002181 ... P0C018 17660832
    163882 4v54:BP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163883 4v54:BP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163884 4v54:BQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163885 4v54:BR (3.3) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163886 4v54:BS (3.3) BS01 rna ? GO:0002181 ... P61175 17660832
    163887 4v54:BT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163888 4v54:BU (3.3) BS01 rna ? GO:0000027 ... P60624 17660832
    163889 4v54:BV (3.3) BS01 rna ? GO:0000027 ... P68919 17660832
    163890 4v54:BV (3.3) BS02 rna ? GO:0000027 ... P68919 17660832
    163891 4v54:BW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163892 4v54:BW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163893 4v54:BX (3.3) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163894 4v54:BY (3.3) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163895 4v54:BY (3.3) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163896 4v54:BZ (3.3) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163897 4v54:CB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163898 4v54:CC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163899 4v54:CD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163900 4v54:CE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163901 4v54:CF (3.3) BS01 rna ? GO:0002181 ... P02358 17660832
    163902 4v54:CG (3.3) BS01 rna ? GO:0000028 ... P02359 17660832
    163903 4v54:CH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163904 4v54:CI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163905 4v54:CJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163906 4v54:CK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163907 4v54:CL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163908 4v54:CM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163909 4v54:CN (3.3) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163910 4v54:CO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163911 4v54:CO (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163912 4v54:CP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163913 4v54:CQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163914 4v54:CR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163915 4v54:CS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163916 4v54:CT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163917 4v54:CU (3.3) BS01 rna ? GO:0000028 ... P68679 17660832
    163918 4v54:D0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163919 4v54:D1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163920 4v54:D2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163921 4v54:D3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163922 4v54:D4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163923 4v54:D4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163924 4v54:D6 (3.3) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    163925 4v54:DC (3.3) BS01 rna ? GO:0000027 ... P60422 17660832
    163926 4v54:DD (3.3) BS01 rna ? GO:0000027 ... P60438 17660832
    163927 4v54:DE (3.3) BS01 rna ? GO:0001070 ... P60723 17660832
    163928 4v54:DF (3.3) BS01 rna ? GO:0000027 ... P62399 17660832
    163929 4v54:DF (3.3) BS02 rna ? GO:0000027 ... P62399 17660832
    163930 4v54:DG (3.3) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163931 4v54:DH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163932 4v54:DI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163933 4v54:DJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163934 4v54:DK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163935 4v54:DK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    163936 4v54:DL (3.3) BS01 rna ? GO:0002181 ... P02413 17660832
    163937 4v54:DM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163938 4v54:DM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163939 4v54:DN (3.3) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163940 4v54:DO (3.3) BS01 rna ? GO:0002181 ... P0C018 17660832
    163941 4v54:DO (3.3) BS02 rna ? GO:0002181 ... P0C018 17660832
    163942 4v54:DP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163943 4v54:DP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163944 4v54:DQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163945 4v54:DR (3.3) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163946 4v54:DS (3.3) BS01 rna ? GO:0002181 ... P61175 17660832
    163947 4v54:DT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163948 4v54:DU (3.3) BS01 rna ? GO:0000027 ... P60624 17660832
    163949 4v54:DV (3.3) BS01 rna ? GO:0000027 ... P68919 17660832
    163950 4v54:DW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163951 4v54:DW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163952 4v54:DX (3.3) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163953 4v54:DY (3.3) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163954 4v54:DY (3.3) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163955 4v54:DZ (3.3) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163956 4v55:AB (4.0) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163957 4v55:AC (4.0) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163958 4v55:AD (4.0) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163959 4v55:AE (4.0) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163960 4v55:AF (4.0) BS01 rna ? GO:0002181 ... P02358 17660832
    163961 4v55:AG (4.0) BS01 rna ? GO:0000028 ... P02359 17660832
    163962 4v55:AH (4.0) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163963 4v55:AI (4.0) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163964 4v55:AJ (4.0) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163965 4v55:AK (4.0) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163966 4v55:AL (4.0) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163967 4v55:AM (4.0) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163968 4v55:AN (4.0) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163969 4v55:AO (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163970 4v55:AO (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163971 4v55:AP (4.0) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163972 4v55:AQ (4.0) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163973 4v55:AR (4.0) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163974 4v55:AS (4.0) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163975 4v55:AT (4.0) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163976 4v55:AU (4.0) BS01 rna ? GO:0000028 ... P68679 17660832
    163977 4v55:B0 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163978 4v55:B1 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163979 4v55:B2 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163980 4v55:B3 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163981 4v55:B4 (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163982 4v55:B4 (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163983 4v55:B6 (4.0) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    163984 4v55:BC (4.0) BS01 rna ? GO:0000027 ... P60422 17660832
    163985 4v55:BC (4.0) BS02 rna ? GO:0000027 ... P60422 17660832
    163986 4v55:BD (4.0) BS01 rna ? GO:0000027 ... P60438 17660832
    163987 4v55:BE (4.0) BS01 rna ? GO:0001070 ... P60723 17660832
    163988 4v55:BF (4.0) BS01 rna ? GO:0000027 ... P62399 17660832
    163989 4v55:BF (4.0) BS02 rna ? GO:0000027 ... P62399 17660832
    163990 4v55:BG (4.0) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163991 4v55:BH (4.0) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163992 4v55:BI (4.0) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163993 4v55:BJ (4.0) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163994 4v55:BK (4.0) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163995 4v55:BK (4.0) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    163996 4v55:BL (4.0) BS01 rna ? GO:0002181 ... P02413 17660832
    163997 4v55:BM (4.0) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163998 4v55:BM (4.0) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163999 4v55:BN (4.0) BS01 rna ? GO:0000027 ... P0AG44 17660832
    164000 4v55:BO (4.0) BS01 rna ? GO:0002181 ... P0C018 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417