Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163601 4v52:AD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163602 4v52:AE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163603 4v52:AF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    163604 4v52:AG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    163605 4v52:AH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163606 4v52:AI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163607 4v52:AJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163608 4v52:AK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163609 4v52:AL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163610 4v52:AM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163611 4v52:AN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163612 4v52:AO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163613 4v52:AO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163614 4v52:AP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163615 4v52:AQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163616 4v52:AR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163617 4v52:AS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163618 4v52:AT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163619 4v52:AU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    163620 4v52:B0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163621 4v52:B1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163622 4v52:B2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163623 4v52:B3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163624 4v52:B4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163625 4v52:B4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163626 4v52:BC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    163627 4v52:BD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    163628 4v52:BE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    163629 4v52:BF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    163630 4v52:BF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    163631 4v52:BG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163632 4v52:BH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163633 4v52:BH (3.21) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    163634 4v52:BI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163635 4v52:BJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163636 4v52:BK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163637 4v52:BK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    163638 4v52:BL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    163639 4v52:BM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163640 4v52:BM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163641 4v52:BN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163642 4v52:BO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    163643 4v52:BO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    163644 4v52:BP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163645 4v52:BP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163646 4v52:BQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163647 4v52:BR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163648 4v52:BS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    163649 4v52:BT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163650 4v52:BU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    163651 4v52:BV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    163652 4v52:BV (3.21) BS02 rna ? GO:0000027 ... P68919 17660832
    163653 4v52:BW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163654 4v52:BW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163655 4v52:BX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163656 4v52:BY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163657 4v52:BY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163658 4v52:BZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163659 4v52:CB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163660 4v52:CC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163661 4v52:CD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163662 4v52:CE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163663 4v52:CF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    163664 4v52:CG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    163665 4v52:CH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163666 4v52:CI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163667 4v52:CJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163668 4v52:CJ (3.21) BS02 rna ? GO:0000049 ... P0A7R5 17660832
    163669 4v52:CK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163670 4v52:CL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163671 4v52:CM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163672 4v52:CN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163673 4v52:CO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163674 4v52:CO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163675 4v52:CP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163676 4v52:CQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163677 4v52:CR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163678 4v52:CS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163679 4v52:CT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163680 4v52:CU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    163681 4v52:D0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163682 4v52:D1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163683 4v52:D2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163684 4v52:D3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163685 4v52:D4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163686 4v52:D4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163687 4v52:DC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    163688 4v52:DD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    163689 4v52:DE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    163690 4v52:DF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    163691 4v52:DF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    163692 4v52:DG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163693 4v52:DH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163694 4v52:DI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163695 4v52:DJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163696 4v52:DK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163697 4v52:DK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    163698 4v52:DL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    163699 4v52:DM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163700 4v52:DM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163701 4v52:DN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163702 4v52:DO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    163703 4v52:DO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    163704 4v52:DP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163705 4v52:DP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163706 4v52:DQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163707 4v52:DR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163708 4v52:DS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    163709 4v52:DT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163710 4v52:DU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    163711 4v52:DV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    163712 4v52:DW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163713 4v52:DW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163714 4v52:DX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163715 4v52:DY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163716 4v52:DY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163717 4v52:DZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163718 4v53:AB (3.54) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163719 4v53:AC (3.54) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163720 4v53:AD (3.54) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163721 4v53:AE (3.54) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163722 4v53:AF (3.54) BS01 rna ? GO:0002181 ... P02358 17660832
    163723 4v53:AG (3.54) BS01 rna ? GO:0000028 ... P02359 17660832
    163724 4v53:AH (3.54) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163725 4v53:AI (3.54) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163726 4v53:AJ (3.54) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163727 4v53:AK (3.54) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163728 4v53:AL (3.54) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163729 4v53:AM (3.54) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163730 4v53:AN (3.54) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163731 4v53:AO (3.54) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163732 4v53:AO (3.54) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163733 4v53:AP (3.54) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163734 4v53:AQ (3.54) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163735 4v53:AR (3.54) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163736 4v53:AS (3.54) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163737 4v53:AT (3.54) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163738 4v53:AU (3.54) BS01 rna ? GO:0000028 ... P68679 17660832
    163739 4v53:B0 (3.54) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    163740 4v53:B1 (3.54) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    163741 4v53:B2 (3.54) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    163742 4v53:B3 (3.54) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    163743 4v53:B4 (3.54) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    163744 4v53:B4 (3.54) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    163745 4v53:BC (3.54) BS01 rna ? GO:0000027 ... P60422 17660832
    163746 4v53:BC (3.54) BS02 rna ? GO:0000027 ... P60422 17660832
    163747 4v53:BD (3.54) BS01 rna ? GO:0000027 ... P60438 17660832
    163748 4v53:BE (3.54) BS01 rna ? GO:0001070 ... P60723 17660832
    163749 4v53:BF (3.54) BS01 rna ? GO:0000027 ... P62399 17660832
    163750 4v53:BF (3.54) BS02 rna ? GO:0000027 ... P62399 17660832
    163751 4v53:BG (3.54) BS01 rna ? GO:0000027 ... P0AG55 17660832
    163752 4v53:BH (3.54) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    163753 4v53:BH (3.54) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    163754 4v53:BI (3.54) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    163755 4v53:BJ (3.54) BS01 rna ? GO:0002181 ... P0AA10 17660832
    163756 4v53:BK (3.54) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    163757 4v53:BL (3.54) BS01 rna ? GO:0002181 ... P02413 17660832
    163758 4v53:BM (3.54) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    163759 4v53:BM (3.54) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    163760 4v53:BN (3.54) BS01 rna ? GO:0000027 ... P0AG44 17660832
    163761 4v53:BO (3.54) BS01 rna ? GO:0002181 ... P0C018 17660832
    163762 4v53:BO (3.54) BS02 rna ? GO:0002181 ... P0C018 17660832
    163763 4v53:BP (3.54) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    163764 4v53:BP (3.54) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    163765 4v53:BQ (3.54) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    163766 4v53:BR (3.54) BS01 rna ? GO:0002181 ... P0AG48 17660832
    163767 4v53:BS (3.54) BS01 rna ? GO:0002181 ... P61175 17660832
    163768 4v53:BT (3.54) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    163769 4v53:BU (3.54) BS01 rna ? GO:0000027 ... P60624 17660832
    163770 4v53:BV (3.54) BS01 rna ? GO:0000027 ... P68919 17660832
    163771 4v53:BV (3.54) BS02 rna ? GO:0000027 ... P68919 17660832
    163772 4v53:BW (3.54) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    163773 4v53:BW (3.54) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    163774 4v53:BX (3.54) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    163775 4v53:BY (3.54) BS01 rna ? GO:0000027 ... P0AG51 17660832
    163776 4v53:BY (3.54) BS02 rna ? GO:0000027 ... P0AG51 17660832
    163777 4v53:BZ (3.54) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    163778 4v53:CB (3.54) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163779 4v53:CC (3.54) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    163780 4v53:CD (3.54) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    163781 4v53:CE (3.54) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    163782 4v53:CF (3.54) BS01 rna ? GO:0002181 ... P02358 17660832
    163783 4v53:CG (3.54) BS01 rna ? GO:0000028 ... P02359 17660832
    163784 4v53:CH (3.54) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    163785 4v53:CI (3.54) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    163786 4v53:CJ (3.54) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    163787 4v53:CJ (3.54) BS02 rna ? GO:0000049 ... P0A7R5 17660832
    163788 4v53:CK (3.54) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    163789 4v53:CL (3.54) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    163790 4v53:CM (3.54) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    163791 4v53:CN (3.54) BS01 rna ? GO:0000028 ... P0AG59 17660832
    163792 4v53:CO (3.54) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    163793 4v53:CO (3.54) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    163794 4v53:CP (3.54) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    163795 4v53:CQ (3.54) BS01 rna ? GO:0000028 ... P0AG63 17660832
    163796 4v53:CR (3.54) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    163797 4v53:CS (3.54) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    163798 4v53:CT (3.54) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    163799 4v53:CU (3.54) BS01 rna ? GO:0000028 ... P68679 17660832
    163800 4v53:D0 (3.54) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417