Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163401 4v50:BU (3.22) BS01 rna ? GO:0000027 ... P60624 17038497
    163402 4v50:BV (3.22) BS01 rna ? GO:0000027 ... P68919 17038497
    163403 4v50:BV (3.22) BS02 rna ? GO:0000027 ... P68919 17038497
    163404 4v50:BW (3.22) BS01 rna ? GO:0000027 ... P0A7L8 17038497
    163405 4v50:BX (3.22) BS01 rna ? GO:0000027 ... P0A7M2 17038497
    163406 4v50:BY (3.22) BS01 rna ? GO:0000027 ... P0A7M6 17038497
    163407 4v50:BZ (3.22) BS01 rna ? GO:0000027 ... P0AG51 17038497
    163408 4v50:BZ (3.22) BS02 rna ? GO:0000027 ... P0AG51 17038497
    163409 4v50:CB (3.22) BS01 rna ? GO:0000028 ... P0A7V0 17038497
    163410 4v50:CC (3.22) BS01 rna ? GO:0000028 ... P0A7V3 17038497
    163411 4v50:CD (3.22) BS01 rna ? GO:0000028 ... P0A7V8 17038497
    163412 4v50:CE (3.22) BS01 rna ? GO:0000028 ... P0A7W1 17038497
    163413 4v50:CF (3.22) BS01 rna ? GO:0002181 ... P02358 17038497
    163414 4v50:CG (3.22) BS01 rna ? GO:0000028 ... P02359 17038497
    163415 4v50:CH (3.22) BS01 rna ? GO:0000028 ... P0A7W7 17038497
    163416 4v50:CI (3.22) BS01 rna ? GO:0000049 ... P0A7X3 17038497
    163417 4v50:CJ (3.22) BS01 rna ? GO:0000049 ... P0A7R5 17038497
    163418 4v50:CK (3.22) BS01 rna ? GO:0002181 ... P0A7R9 17038497
    163419 4v50:CL (3.22) BS01 rna ? GO:0000049 ... P0A7S3 17038497
    163420 4v50:CM (3.22) BS01 rna ? GO:0000049 ... P0A7S9 17038497
    163421 4v50:CN (3.22) BS01 rna ? GO:0000028 ... P0AG59 17038497
    163422 4v50:CO (3.22) BS01 rna ? GO:0003735 ... Q8X9M2 17038497
    163423 4v50:CO (3.22) BS02 rna ? GO:0003735 ... Q8X9M2 17038497
    163424 4v50:CP (3.22) BS01 rna ? GO:0000028 ... P0A7T3 17038497
    163425 4v50:CQ (3.22) BS01 rna ? GO:0000028 ... P0AG63 17038497
    163426 4v50:CR (3.22) BS01 rna ? GO:0002181 ... P0A7T7 17038497
    163427 4v50:CS (3.22) BS01 rna ? GO:0000028 ... P0A7U3 17038497
    163428 4v50:CT (3.22) BS01 rna ? GO:0000028 ... P0A7U7 17038497
    163429 4v50:CU (3.22) BS01 rna ? GO:0000028 ... P68679 17038497
    163430 4v50:D0 (3.22) BS01 rna ? GO:0000027 ... P0A7N4 17038497
    163431 4v50:D1 (3.22) BS01 rna ? GO:0000027 ... P0A7N9 17038497
    163432 4v50:D2 (3.22) BS01 rna ? GO:0002181 ... P0A7P5 17038497
    163433 4v50:D3 (3.22) BS01 rna ? GO:0002181 ... P0A7Q1 17038497
    163434 4v50:D4 (3.22) BS01 rna ? GO:0002181 ... P0A7Q6 17038497
    163435 4v50:D4 (3.22) BS02 ZN ? GO:0002181 ... P0A7Q6 17038497
    163436 4v50:DC (3.22) BS01 rna ? GO:0000027 ... P60422 17038497
    163437 4v50:DD (3.22) BS01 rna ? GO:0000027 ... P60438 17038497
    163438 4v50:DE (3.22) BS01 rna ? GO:0001070 ... P60723 17038497
    163439 4v50:DF (3.22) BS01 rna ? GO:0000027 ... P62399 17038497
    163440 4v50:DF (3.22) BS02 rna ? GO:0000027 ... P62399 17038497
    163441 4v50:DG (3.22) BS01 rna ? GO:0000027 ... P0AG55 17038497
    163442 4v50:DH (3.22) BS01 rna ? GO:0002181 ... P0A7R1 17038497
    163443 4v50:DI (3.22) BS01 rna ? GO:0000027 ... P0A7J7 17038497
    163444 4v50:DJ (3.22) BS01 rna ? GO:0002181 ... P0AA10 17038497
    163445 4v50:DK (3.22) BS01 rna ? GO:0002181 ... P0ADY3 17038497
    163446 4v50:DL (3.22) BS01 rna ? GO:0002181 ... P02413 17038497
    163447 4v50:DM (3.22) BS01 rna ? GO:0000027 ... P0ADY7 17038497
    163448 4v50:DM (3.22) BS02 rna ? GO:0000027 ... P0ADY7 17038497
    163449 4v50:DN (3.22) BS01 rna ? GO:0000027 ... P0AG44 17038497
    163450 4v50:DO (3.22) BS01 rna ? GO:0002181 ... P0C018 17038497
    163451 4v50:DO (3.22) BS02 rna ? GO:0002181 ... P0C018 17038497
    163452 4v50:DP (3.22) BS01 rna ? GO:0000027 ... P0A7K6 17038497
    163453 4v50:DP (3.22) BS02 rna ? GO:0000027 ... P0A7K6 17038497
    163454 4v50:DQ (3.22) BS01 rna ? GO:0000027 ... P0A7L3 17038497
    163455 4v50:DR (3.22) BS01 rna ? GO:0002181 ... P0AG48 17038497
    163456 4v50:DS (3.22) BS01 rna ? GO:0002181 ... P61175 17038497
    163457 4v50:DT (3.22) BS01 rna ? GO:0000027 ... P0ADZ0 17038497
    163458 4v50:DU (3.22) BS01 rna ? GO:0000027 ... P60624 17038497
    163459 4v50:DV (3.22) BS01 rna ? GO:0000027 ... P68919 17038497
    163460 4v50:DW (3.22) BS01 rna ? GO:0000027 ... P0A7L8 17038497
    163461 4v50:DX (3.22) BS01 rna ? GO:0000027 ... P0A7M2 17038497
    163462 4v50:DY (3.22) BS01 rna ? GO:0000027 ... P0A7M6 17038497
    163463 4v50:DZ (3.22) BS01 rna ? GO:0000027 ... P0AG51 17038497
    163464 4v50:DZ (3.22) BS02 rna ? GO:0000027 ... P0AG51 17038497
    163465 4v51:AB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    163466 4v51:AC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    163467 4v51:AD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    163468 4v51:AD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    163469 4v51:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    163470 4v51:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    163471 4v51:AG (2.8) BS01 rna ? GO:0000028 ... P17291 16959973
    163472 4v51:AG (2.8) BS02 rna ? GO:0000028 ... P17291 16959973
    163473 4v51:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163474 4v51:AI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    163475 4v51:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    163476 4v51:AJ (2.8) BS02 rna ? GO:0000049 ... Q5SHN7 16959973
    163477 4v51:AK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    163478 4v51:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    163479 4v51:AM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    163480 4v51:AM (2.8) BS02 rna ? GO:0000049 ... P80377 16959973
    163481 4v51:AN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163482 4v51:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    163483 4v51:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    163484 4v51:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    163485 4v51:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    163486 4v51:AQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163487 4v51:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    163488 4v51:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    163489 4v51:AT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    163490 4v51:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    163491 4v51:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    163492 4v51:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    163493 4v51:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    163494 4v51:B1 (2.8) BS02 MG ? GO:0003735 ... P60494 16959973
    163495 4v51:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    163496 4v51:B2 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 16959973
    163497 4v51:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    163498 4v51:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    163499 4v51:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 16959973
    163500 4v51:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    163501 4v51:B6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    163502 4v51:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    163503 4v51:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    163504 4v51:BC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    163505 4v51:BD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    163506 4v51:BD (2.8) BS02 rna ? GO:0002181 ... P60405 16959973
    163507 4v51:BD (2.8) BS03 MG ? GO:0002181 ... P60405 16959973
    163508 4v51:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    163509 4v51:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    163510 4v51:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    163511 4v51:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    163512 4v51:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    163513 4v51:BG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    163514 4v51:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163515 4v51:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    163516 4v51:BN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    163517 4v51:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    163518 4v51:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    163519 4v51:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    163520 4v51:BQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    163521 4v51:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    163522 4v51:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    163523 4v51:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    163524 4v51:BT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    163525 4v51:BT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    163526 4v51:BU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    163527 4v51:BV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    163528 4v51:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    163529 4v51:BX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 16959973
    163530 4v51:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    163531 4v51:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    163532 4v51:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 16959973
    163533 4v51:CB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    163534 4v51:CC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    163535 4v51:CD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    163536 4v51:CD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    163537 4v51:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    163538 4v51:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    163539 4v51:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 16959973
    163540 4v51:CG (2.8) BS01 rna ? GO:0000028 ... P17291 16959973
    163541 4v51:CG (2.8) BS02 rna ? GO:0000028 ... P17291 16959973
    163542 4v51:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163543 4v51:CI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    163544 4v51:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    163545 4v51:CK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    163546 4v51:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    163547 4v51:CM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    163548 4v51:CN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163549 4v51:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    163550 4v51:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    163551 4v51:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    163552 4v51:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    163553 4v51:CQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163554 4v51:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    163555 4v51:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    163556 4v51:CT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    163557 4v51:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    163558 4v51:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    163559 4v51:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    163560 4v51:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    163561 4v51:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 16959973
    163562 4v51:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    163563 4v51:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    163564 4v51:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    163565 4v51:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    163566 4v51:D6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    163567 4v51:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    163568 4v51:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    163569 4v51:DC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    163570 4v51:DD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    163571 4v51:DD (2.8) BS02 MG ? GO:0002181 ... P60405 16959973
    163572 4v51:DE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    163573 4v51:DF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    163574 4v51:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    163575 4v51:DG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    163576 4v51:DG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    163577 4v51:DG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    163578 4v51:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    163579 4v51:DI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    163580 4v51:DI (2.8) BS02 rna ? GO:0003735 ... Q5SLQ1 16959973
    163581 4v51:DN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    163582 4v51:DO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    163583 4v51:DO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    163584 4v51:DP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    163585 4v51:DQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    163586 4v51:DR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    163587 4v51:DR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 16959973
    163588 4v51:DS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    163589 4v51:DS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    163590 4v51:DS (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 16959973
    163591 4v51:DT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    163592 4v51:DT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    163593 4v51:DU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    163594 4v51:DV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    163595 4v51:DW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    163596 4v51:DX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 16959973
    163597 4v51:DY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    163598 4v51:DZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    163599 4v52:AB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    163600 4v52:AC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417