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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163201 4v4x:BM (5.0) BS01 rna ? GO:0003729 ... P60488 17051149
    163202 4v4x:BN (5.0) BS01 rna ? GO:0003735 ... P60558 17051149
    163203 4v4x:BN (5.0) BS02 rna ? GO:0003735 ... P60558 17051149
    163204 4v4x:BO (5.0) BS01 rna ? GO:0003735 ... Q5SHQ7 17051149
    163205 4v4x:BP (5.0) BS01 rna ? GO:0000049 ... P60489 17051149
    163206 4v4x:BQ (5.0) BS01 rna ? GO:0003735 ... Q9Z9H5 17051149
    163207 4v4x:BR (5.0) BS01 rna ? GO:0003735 ... Q5SHQ4 17051149
    163208 4v4x:BR (5.0) BS02 rna ? GO:0003735 ... Q5SHQ4 17051149
    163209 4v4x:BS (5.0) BS01 rna ? GO:0003735 ... P60490 17051149
    163210 4v4x:BS (5.0) BS02 rna ? GO:0003735 ... P60490 17051149
    163211 4v4x:BT (5.0) BS01 rna ? GO:0000027 ... P60491 17051149
    163212 4v4x:BU (5.0) BS01 rna ? GO:0003723 ... P60492 17051149
    163213 4v4x:BV (5.0) BS01 rna ? GO:0003735 ... Q5SHP3 17051149
    163214 4v4x:BW (5.0) BS01 rna ? GO:0000027 ... Q5SHP0 17051149
    163215 4v4x:BX (5.0) BS01 rna ? GO:0003723 ... Q5SHP9 17051149
    163216 4v4x:BY (5.0) BS01 rna ? GO:0003723 ... Q5SHZ1 17051149
    163217 4v4x:BY (5.0) BS02 rna ? GO:0003723 ... Q5SHZ1 17051149
    163218 4v4x:BZ (5.0) BS01 rna ? GO:0003735 ... P60493 17051149
    163219 4v4x:BZ (5.0) BS02 rna ? GO:0003735 ... P60493 17051149
    163220 4v4x:BZ (5.0) BS03 rna ? GO:0003735 ... P60493 17051149
    163221 4v4y:AE (5.5) BS01 rna ? GO:0003735 ... P80371 17051149
    163222 4v4y:AE (5.5) BS02 rna ? GO:0003735 ... P80371 17051149
    163223 4v4y:AF (5.5) BS01 rna ? GO:0003676 ... P80372 17051149
    163224 4v4y:AG (5.5) BS01 rna ? GO:0003723 ... P80373 17051149
    163225 4v4y:AG (5.5) BS02 rna ? GO:0003723 ... P80373 17051149
    163226 4v4y:AH (5.5) BS01 rna ? GO:0003723 ... Q5SHQ5 17051149
    163227 4v4y:AI (5.5) BS01 rna ? GO:0003735 ... Q5SLP8 17051149
    163228 4v4y:AJ (5.5) BS01 rna ? GO:0000028 ... P17291 17051149
    163229 4v4y:AJ (5.5) BS02 rna ? GO:0000028 ... P17291 17051149
    163230 4v4y:AK (5.5) BS01 rna ? GO:0003735 ... P0DOY9 17051149
    163231 4v4y:AL (5.5) BS01 rna ? GO:0000049 ... P80374 17051149
    163232 4v4y:AL (5.5) BS02 rna ? GO:0000049 ... P80374 17051149
    163233 4v4y:AM (5.5) BS01 rna ? GO:0000049 ... Q5SHN7 17051149
    163234 4v4y:AN (5.5) BS01 rna ? GO:0003735 ... P80376 17051149
    163235 4v4y:AO (5.5) BS01 rna ? GO:0000049 ... Q5SHN3 17051149
    163236 4v4y:AP (5.5) BS01 rna ? GO:0000049 ... P80377 17051149
    163237 4v4y:AP (5.5) BS02 rna ? GO:0000049 ... P80377 17051149
    163238 4v4y:AQ (5.5) BS01 rna ? GO:0003735 ... P0DOY6 17051149
    163239 4v4y:AR (5.5) BS01 rna ? GO:0003735 ... Q5SJ76 17051149
    163240 4v4y:AS (5.5) BS01 rna ? GO:0003735 ... Q5SJH3 17051149
    163241 4v4y:AT (5.5) BS01 rna ? GO:0003735 ... P24321 17051149
    163242 4v4y:AU (5.5) BS01 rna ? GO:0003735 ... P80382 17051149
    163243 4v4y:AV (5.5) BS01 rna ? GO:0000028 ... Q5SHP2 17051149
    163244 4v4y:AW (5.5) BS01 rna ? GO:0003723 ... P80380 17051149
    163245 4v4y:B1 (5.5) BS01 rna ? GO:0003735 ... Q9LCY4 17051149
    163246 4v4y:B2 (5.5) BS01 rna ? GO:0003735 ... Q5SHQ6 17051149
    163247 4v4y:B3 (5.5) BS01 rna ? GO:0003735 ... Q5SJE1 17051149
    163248 4v4y:B3 (5.5) BS02 rna ? GO:0003735 ... Q5SJE1 17051149
    163249 4v4y:B4 (5.5) BS01 rna ? GO:0003735 ... P80339 17051149
    163250 4v4y:B5 (5.5) BS01 rna ? GO:0000049 ... P35871 17051149
    163251 4v4y:B6 (5.5) BS01 rna ? GO:0003735 ... P80340 17051149
    163252 4v4y:B7 (5.5) BS01 rna ? GO:0003735 ... Q5SKU1 17051149
    163253 4v4y:B8 (5.5) BS01 rna ? GO:0003735 ... Q5SHR2 17051149
    163254 4v4y:BC (5.5) BS01 rna ? GO:0000049 ... P27150 17051149
    163255 4v4y:BC (5.5) BS02 rna ? GO:0000049 ... P27150 17051149
    163256 4v4y:BD (5.5) BS01 rna ? GO:0002181 ... P60405 17051149
    163257 4v4y:BD (5.5) BS02 rna ? GO:0002181 ... P60405 17051149
    163258 4v4y:BE (5.5) BS01 rna ? GO:0003735 ... Q5SHN8 17051149
    163259 4v4y:BF (5.5) BS01 rna ? GO:0003735 ... Q5SHN9 17051149
    163260 4v4y:BG (5.5) BS01 rna ? GO:0000049 ... Q5SHQ0 17051149
    163261 4v4y:BG (5.5) BS02 rna ? GO:0000049 ... Q5SHQ0 17051149
    163262 4v4y:BG (5.5) BS03 rna ? GO:0000049 ... Q5SHQ0 17051149
    163263 4v4y:BH (5.5) BS01 rna ? GO:0002181 ... P0DOY8 17051149
    163264 4v4y:BK (5.5) BS01 rna ? GO:0003735 ... P27151 17051149
    163265 4v4y:BL (5.5) BS01 rna ? GO:0003735 ... Q5SLP6 17051149
    163266 4v4y:BM (5.5) BS01 rna ? GO:0003729 ... P60488 17051149
    163267 4v4y:BN (5.5) BS01 rna ? GO:0003735 ... P60558 17051149
    163268 4v4y:BN (5.5) BS02 rna ? GO:0003735 ... P60558 17051149
    163269 4v4y:BO (5.5) BS01 rna ? GO:0003735 ... Q5SHQ7 17051149
    163270 4v4y:BP (5.5) BS01 rna ? GO:0000049 ... P60489 17051149
    163271 4v4y:BQ (5.5) BS01 rna ? GO:0003735 ... Q9Z9H5 17051149
    163272 4v4y:BR (5.5) BS01 rna ? GO:0003735 ... Q5SHQ4 17051149
    163273 4v4y:BR (5.5) BS02 rna ? GO:0003735 ... Q5SHQ4 17051149
    163274 4v4y:BS (5.5) BS01 rna ? GO:0003735 ... P60490 17051149
    163275 4v4y:BS (5.5) BS02 rna ? GO:0003735 ... P60490 17051149
    163276 4v4y:BT (5.5) BS01 rna ? GO:0000027 ... P60491 17051149
    163277 4v4y:BU (5.5) BS01 rna ? GO:0003723 ... P60492 17051149
    163278 4v4y:BV (5.5) BS01 rna ? GO:0003735 ... Q5SHP3 17051149
    163279 4v4y:BW (5.5) BS01 rna ? GO:0000027 ... Q5SHP0 17051149
    163280 4v4y:BX (5.5) BS01 rna ? GO:0003723 ... Q5SHP9 17051149
    163281 4v4y:BY (5.5) BS01 rna ? GO:0003723 ... Q5SHZ1 17051149
    163282 4v4y:BY (5.5) BS02 rna ? GO:0003723 ... Q5SHZ1 17051149
    163283 4v4y:BZ (5.5) BS01 rna ? GO:0003735 ... P60493 17051149
    163284 4v4y:BZ (5.5) BS02 rna ? GO:0003735 ... P60493 17051149
    163285 4v4y:BZ (5.5) BS03 rna ? GO:0003735 ... P60493 17051149
    163286 4v4z:AE (4.51) BS01 rna ? GO:0003735 ... P80371 17051149
    163287 4v4z:AF (4.51) BS01 rna ? GO:0003676 ... P80372 17051149
    163288 4v4z:AG (4.51) BS01 rna ? GO:0003723 ... P80373 17051149
    163289 4v4z:AH (4.51) BS01 rna ? GO:0003723 ... Q5SHQ5 17051149
    163290 4v4z:AH (4.51) BS02 rna ? GO:0003723 ... Q5SHQ5 17051149
    163291 4v4z:AI (4.51) BS01 rna ? GO:0003735 ... Q5SLP8 17051149
    163292 4v4z:AJ (4.51) BS01 rna ? GO:0000028 ... P17291 17051149
    163293 4v4z:AJ (4.51) BS02 rna ? GO:0000028 ... P17291 17051149
    163294 4v4z:AK (4.51) BS01 rna ? GO:0003735 ... P0DOY9 17051149
    163295 4v4z:AL (4.51) BS01 rna ? GO:0000049 ... P80374 17051149
    163296 4v4z:AL (4.51) BS02 rna ? GO:0000049 ... P80374 17051149
    163297 4v4z:AM (4.51) BS01 rna ? GO:0000049 ... Q5SHN7 17051149
    163298 4v4z:AN (4.51) BS01 rna ? GO:0003735 ... P80376 17051149
    163299 4v4z:AO (4.51) BS01 rna ? GO:0000049 ... Q5SHN3 17051149
    163300 4v4z:AP (4.51) BS01 rna ? GO:0000049 ... P80377 17051149
    163301 4v4z:AP (4.51) BS02 rna ? GO:0000049 ... P80377 17051149
    163302 4v4z:AQ (4.51) BS01 rna ? GO:0003735 ... P0DOY6 17051149
    163303 4v4z:AR (4.51) BS01 rna ? GO:0003735 ... Q5SJ76 17051149
    163304 4v4z:AR (4.51) BS02 rna ? GO:0003735 ... Q5SJ76 17051149
    163305 4v4z:AS (4.51) BS01 rna ? GO:0003735 ... Q5SJH3 17051149
    163306 4v4z:AT (4.51) BS01 rna ? GO:0003735 ... P24321 17051149
    163307 4v4z:AU (4.51) BS01 rna ? GO:0003735 ... P80382 17051149
    163308 4v4z:AV (4.51) BS01 rna ? GO:0000028 ... Q5SHP2 17051149
    163309 4v4z:AW (4.51) BS01 rna ? GO:0003723 ... P80380 17051149
    163310 4v4z:B1 (4.51) BS01 rna ? GO:0003735 ... Q9LCY4 17051149
    163311 4v4z:B2 (4.51) BS01 rna ? GO:0003735 ... Q5SHQ6 17051149
    163312 4v4z:B3 (4.51) BS01 rna ? GO:0003735 ... Q5SJE1 17051149
    163313 4v4z:B3 (4.51) BS02 rna ? GO:0003735 ... Q5SJE1 17051149
    163314 4v4z:B4 (4.51) BS01 rna ? GO:0003735 ... P80339 17051149
    163315 4v4z:B5 (4.51) BS01 rna ? GO:0000049 ... P35871 17051149
    163316 4v4z:B6 (4.51) BS01 rna ? GO:0003735 ... P80340 17051149
    163317 4v4z:B7 (4.51) BS01 rna ? GO:0003735 ... Q5SKU1 17051149
    163318 4v4z:B8 (4.51) BS01 rna ? GO:0003735 ... Q5SHR2 17051149
    163319 4v4z:BC (4.51) BS01 rna ? GO:0000049 ... P27150 17051149
    163320 4v4z:BC (4.51) BS02 rna ? GO:0000049 ... P27150 17051149
    163321 4v4z:BD (4.51) BS01 rna ? GO:0002181 ... P60405 17051149
    163322 4v4z:BD (4.51) BS02 rna ? GO:0002181 ... P60405 17051149
    163323 4v4z:BE (4.51) BS01 rna ? GO:0003735 ... Q5SHN8 17051149
    163324 4v4z:BF (4.51) BS01 rna ? GO:0003735 ... Q5SHN9 17051149
    163325 4v4z:BG (4.51) BS01 rna ? GO:0000049 ... Q5SHQ0 17051149
    163326 4v4z:BG (4.51) BS02 rna ? GO:0000049 ... Q5SHQ0 17051149
    163327 4v4z:BG (4.51) BS03 rna ? GO:0000049 ... Q5SHQ0 17051149
    163328 4v4z:BH (4.51) BS01 rna ? GO:0002181 ... P0DOY8 17051149
    163329 4v4z:BK (4.51) BS01 rna ? GO:0003735 ... P27151 17051149
    163330 4v4z:BL (4.51) BS01 rna ? GO:0003735 ... Q5SLP6 17051149
    163331 4v4z:BM (4.51) BS01 rna ? GO:0003729 ... P60488 17051149
    163332 4v4z:BN (4.51) BS01 rna ? GO:0003735 ... P60558 17051149
    163333 4v4z:BN (4.51) BS02 rna ? GO:0003735 ... P60558 17051149
    163334 4v4z:BO (4.51) BS01 rna ? GO:0003735 ... Q5SHQ7 17051149
    163335 4v4z:BP (4.51) BS01 rna ? GO:0000049 ... P60489 17051149
    163336 4v4z:BQ (4.51) BS01 rna ? GO:0003735 ... Q9Z9H5 17051149
    163337 4v4z:BR (4.51) BS01 rna ? GO:0003735 ... Q5SHQ4 17051149
    163338 4v4z:BR (4.51) BS02 rna ? GO:0003735 ... Q5SHQ4 17051149
    163339 4v4z:BS (4.51) BS01 rna ? GO:0003735 ... P60490 17051149
    163340 4v4z:BS (4.51) BS02 rna ? GO:0003735 ... P60490 17051149
    163341 4v4z:BT (4.51) BS01 rna ? GO:0000027 ... P60491 17051149
    163342 4v4z:BU (4.51) BS01 rna ? GO:0003723 ... P60492 17051149
    163343 4v4z:BV (4.51) BS01 rna ? GO:0003735 ... Q5SHP3 17051149
    163344 4v4z:BW (4.51) BS01 rna ? GO:0000027 ... Q5SHP0 17051149
    163345 4v4z:BX (4.51) BS01 rna ? GO:0003723 ... Q5SHP9 17051149
    163346 4v4z:BY (4.51) BS01 rna ? GO:0003723 ... Q5SHZ1 17051149
    163347 4v4z:BY (4.51) BS02 rna ? GO:0003723 ... Q5SHZ1 17051149
    163348 4v4z:BZ (4.51) BS01 rna ? GO:0003735 ... P60493 17051149
    163349 4v4z:BZ (4.51) BS02 rna ? GO:0003735 ... P60493 17051149
    163350 4v4z:BZ (4.51) BS03 rna ? GO:0003735 ... P60493 17051149
    163351 4v50:AB (3.22) BS01 rna ? GO:0000028 ... P0A7V0 17038497
    163352 4v50:AC (3.22) BS01 rna ? GO:0000028 ... P0A7V3 17038497
    163353 4v50:AD (3.22) BS01 rna ? GO:0000028 ... P0A7V8 17038497
    163354 4v50:AE (3.22) BS01 rna ? GO:0000028 ... P0A7W1 17038497
    163355 4v50:AF (3.22) BS01 rna ? GO:0002181 ... P02358 17038497
    163356 4v50:AG (3.22) BS01 rna ? GO:0000028 ... P02359 17038497
    163357 4v50:AH (3.22) BS01 rna ? GO:0000028 ... P0A7W7 17038497
    163358 4v50:AI (3.22) BS01 rna ? GO:0000049 ... P0A7X3 17038497
    163359 4v50:AJ (3.22) BS01 rna ? GO:0000049 ... P0A7R5 17038497
    163360 4v50:AK (3.22) BS01 rna ? GO:0002181 ... P0A7R9 17038497
    163361 4v50:AL (3.22) BS01 rna ? GO:0000049 ... P0A7S3 17038497
    163362 4v50:AM (3.22) BS01 rna ? GO:0000049 ... P0A7S9 17038497
    163363 4v50:AN (3.22) BS01 rna ? GO:0000028 ... P0AG59 17038497
    163364 4v50:AO (3.22) BS01 rna ? GO:0003735 ... Q8X9M2 17038497
    163365 4v50:AO (3.22) BS02 rna ? GO:0003735 ... Q8X9M2 17038497
    163366 4v50:AP (3.22) BS01 rna ? GO:0000028 ... P0A7T3 17038497
    163367 4v50:AQ (3.22) BS01 rna ? GO:0000028 ... P0AG63 17038497
    163368 4v50:AR (3.22) BS01 rna ? GO:0002181 ... P0A7T7 17038497
    163369 4v50:AS (3.22) BS01 rna ? GO:0000028 ... P0A7U3 17038497
    163370 4v50:AT (3.22) BS01 rna ? GO:0000028 ... P0A7U7 17038497
    163371 4v50:AU (3.22) BS01 rna ? GO:0000028 ... P68679 17038497
    163372 4v50:B0 (3.22) BS01 rna ? GO:0000027 ... P0A7N4 17038497
    163373 4v50:B1 (3.22) BS01 rna ? GO:0000027 ... P0A7N9 17038497
    163374 4v50:B2 (3.22) BS01 rna ? GO:0002181 ... P0A7P5 17038497
    163375 4v50:B3 (3.22) BS01 rna ? GO:0002181 ... P0A7Q1 17038497
    163376 4v50:B4 (3.22) BS01 rna ? GO:0002181 ... P0A7Q6 17038497
    163377 4v50:B4 (3.22) BS02 ZN ? GO:0002181 ... P0A7Q6 17038497
    163378 4v50:BC (3.22) BS01 rna ? GO:0000027 ... P60422 17038497
    163379 4v50:BD (3.22) BS01 rna ? GO:0000027 ... P60438 17038497
    163380 4v50:BE (3.22) BS01 rna ? GO:0001070 ... P60723 17038497
    163381 4v50:BF (3.22) BS01 rna ? GO:0000027 ... P62399 17038497
    163382 4v50:BF (3.22) BS02 rna ? GO:0000027 ... P62399 17038497
    163383 4v50:BG (3.22) BS01 rna ? GO:0000027 ... P0AG55 17038497
    163384 4v50:BH (3.22) BS01 rna ? GO:0002181 ... P0A7R1 17038497
    163385 4v50:BH (3.22) BS02 rna ? GO:0002181 ... P0A7R1 17038497
    163386 4v50:BI (3.22) BS01 rna ? GO:0000027 ... P0A7J7 17038497
    163387 4v50:BJ (3.22) BS01 rna ? GO:0002181 ... P0AA10 17038497
    163388 4v50:BK (3.22) BS01 rna ? GO:0002181 ... P0ADY3 17038497
    163389 4v50:BL (3.22) BS01 rna ? GO:0002181 ... P02413 17038497
    163390 4v50:BM (3.22) BS01 rna ? GO:0000027 ... P0ADY7 17038497
    163391 4v50:BM (3.22) BS02 rna ? GO:0000027 ... P0ADY7 17038497
    163392 4v50:BN (3.22) BS01 rna ? GO:0000027 ... P0AG44 17038497
    163393 4v50:BO (3.22) BS01 rna ? GO:0002181 ... P0C018 17038497
    163394 4v50:BO (3.22) BS02 rna ? GO:0002181 ... P0C018 17038497
    163395 4v50:BP (3.22) BS01 rna ? GO:0000027 ... P0A7K6 17038497
    163396 4v50:BP (3.22) BS02 rna ? GO:0000027 ... P0A7K6 17038497
    163397 4v50:BQ (3.22) BS01 rna ? GO:0000027 ... P0A7L3 17038497
    163398 4v50:BR (3.22) BS01 rna ? GO:0002181 ... P0AG48 17038497
    163399 4v50:BS (3.22) BS01 rna ? GO:0002181 ... P61175 17038497
    163400 4v50:BT (3.22) BS01 rna ? GO:0000027 ... P0ADZ0 17038497
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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