Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163001 4v4t:AO (6.46) BS02 rna ? GO:0003735 ... Q5SJ76 16377566
    163002 4v4t:AP (6.46) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    163003 4v4t:AQ (6.46) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    163004 4v4t:AR (6.46) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    163005 4v4t:AS (6.46) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    163006 4v4t:AT (6.46) BS01 rna ? GO:0003723 ... P80380 16377566
    163007 4v4t:B0 (6.46) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    163008 4v4t:B0 (6.46) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    163009 4v4t:B2 (6.46) BS01 rna ? GO:0003735 ... P10971 16377566
    163010 4v4t:B3 (6.46) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    163011 4v4t:B3 (6.46) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    163012 4v4t:B4 (6.46) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    163013 4v4t:B4 (6.46) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    163014 4v4t:B5 (6.46) BS01 rna ? GO:0003735 ... P49228 16377566
    163015 4v4t:B6 (6.46) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    163016 4v4t:B7 (6.46) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    163017 4v4t:B8 (6.46) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    163018 4v4t:B9 (6.46) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    163019 4v4t:BD (6.46) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    163020 4v4t:BE (6.46) BS01 rna ? GO:0003723 ... P20279 16377566
    163021 4v4t:BF (6.46) BS01 rna ? GO:0003723 ... P12735 16377566
    163022 4v4t:BG (6.46) BS01 rna ? GO:0000049 ... P14124 16377566
    163023 4v4t:BG (6.46) BS02 rna ? GO:0000049 ... P14124 16377566
    163024 4v4t:BG (6.46) BS03 rna ? GO:0000049 ... P14124 16377566
    163025 4v4t:BH (6.46) BS01 rna ? GO:0002181 ... Q5L408 16377566
    163026 4v4t:BI (6.46) BS01 rna ? GO:0003735 ... P02417 16377566
    163027 4v4t:BK (6.46) BS01 rna ? GO:0003735 ... P29395 16377566
    163028 4v4t:BN (6.46) BS01 rna ? GO:0003729 ... P29198 16377566
    163029 4v4t:BO (6.46) BS01 rna ? GO:0003735 ... Q5L413 16377566
    163030 4v4t:BO (6.46) BS02 rna ? GO:0003735 ... Q5L413 16377566
    163031 4v4t:BP (6.46) BS01 rna ? GO:0003735 ... P12737 16377566
    163032 4v4t:BQ (6.46) BS01 rna N/A GO:0003735 ... N/A 16377566
    163033 4v4t:BQ (6.46) BS02 rna N/A GO:0003735 ... N/A 16377566
    163034 4v4t:BQ (6.46) BS03 rna N/A GO:0003735 ... N/A 16377566
    163035 4v4t:BR (6.46) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    163036 4v4t:BS (6.46) BS01 rna ? GO:0000027 ... P14123 16377566
    163037 4v4t:BS (6.46) BS02 rna ? GO:0000027 ... P14123 16377566
    163038 4v4t:BT (6.46) BS01 rna ? GO:0003735 ... P14116 16377566
    163039 4v4t:BT (6.46) BS02 rna ? GO:0003735 ... P14116 16377566
    163040 4v4t:BU (6.46) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    163041 4v4t:BV (6.46) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    163042 4v4t:BW (6.46) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    163043 4v4t:BX (6.46) BS01 rna ? GO:0000027 ... P12732 16377566
    163044 4v4t:BY (6.46) BS01 rna ? GO:0002181 ... P10972 16377566
    163045 4v4t:BZ (6.46) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    163046 4v4t:BZ (6.46) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    163047 4v4u:A (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    163048 4v4u:A (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    163049 4v4u:B (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    163050 4v4u:B (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    163051 4v4u:C (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    163052 4v4u:C (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    163053 4v4u:D (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    163054 4v4u:D (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    163055 4v4u:E (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    163056 4v4u:E (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    163057 4v4v:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 16713583
    163058 4v4v:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 16713583
    163059 4v4v:AE (15.0) BS01 rna ? GO:0003723 ... P0A7W1 16713583
    163060 4v4v:AG (15.0) BS01 rna ? GO:0003723 ... P02359 16713583
    163061 4v4v:AG (15.0) BS02 rna ? GO:0003723 ... P02359 16713583
    163062 4v4v:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 16713583
    163063 4v4v:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 16713583
    163064 4v4v:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 16713583
    163065 4v4v:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 16713583
    163066 4v4v:AL (15.0) BS01 rna ? GO:0003735 ... P0A7S3 16713583
    163067 4v4v:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 16713583
    163068 4v4v:AN (15.0) BS01 rna ? GO:0003735 ... P0AG59 16713583
    163069 4v4v:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 16713583
    163070 4v4v:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 16713583
    163071 4v4v:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 16713583
    163072 4v4v:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 16713583
    163073 4v4v:AS (15.0) BS01 rna ? GO:0000028 ... P0A7U3 16713583
    163074 4v4v:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 16713583
    163075 4v4v:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 16713583
    163076 4v4v:B2 (15.0) BS01 rna ? GO:0000027 ... P0A7L0 16713583
    163077 4v4v:B3 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    163078 4v4v:B5 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    163079 4v4v:BA (15.0) BS01 rna ? GO:0003723 ... P60422 16713583
    163080 4v4v:BA (15.0) BS02 rna ? GO:0003723 ... P60422 16713583
    163081 4v4v:BB (15.0) BS01 rna ? GO:0000027 ... P60438 16713583
    163082 4v4v:BC (15.0) BS01 rna ? GO:0001070 ... P60723 16713583
    163083 4v4v:BD (15.0) BS01 rna ? GO:0000027 ... P62399 16713583
    163084 4v4v:BE (15.0) BS01 rna ? GO:0000027 ... P0AG55 16713583
    163085 4v4v:BF (15.0) BS01 rna ? GO:0002181 ... P0A7R1 16713583
    163086 4v4v:BG (15.0) BS01 rna ? GO:0000027 ... P0A7J7 16713583
    163087 4v4v:BH (15.0) BS01 rna ? GO:0002181 ... P0AA10 16713583
    163088 4v4v:BI (15.0) BS01 rna ? GO:0002181 ... P0ADY3 16713583
    163089 4v4v:BI (15.0) BS02 rna ? GO:0002181 ... P0ADY3 16713583
    163090 4v4v:BJ (15.0) BS01 rna ? GO:0002181 ... P02413 16713583
    163091 4v4v:BK (15.0) BS01 rna ? GO:0000027 ... P0ADY7 16713583
    163092 4v4v:BK (15.0) BS02 rna ? GO:0000027 ... P0ADY7 16713583
    163093 4v4v:BK (15.0) BS03 rna ? GO:0000027 ... P0ADY7 16713583
    163094 4v4v:BL (15.0) BS01 rna ? GO:0000027 ... P0AG44 16713583
    163095 4v4v:BL (15.0) BS02 peptide ? GO:0000027 ... P0AG44 16713583
    163096 4v4v:BM (15.0) BS01 rna ? GO:0002181 ... P0C018 16713583
    163097 4v4v:BM (15.0) BS02 rna ? GO:0002181 ... P0C018 16713583
    163098 4v4v:BN (15.0) BS01 rna ? GO:0000027 ... P0A7K6 16713583
    163099 4v4v:BN (15.0) BS02 rna ? GO:0000027 ... P0A7K6 16713583
    163100 4v4v:BO (15.0) BS01 rna ? GO:0000027 ... P0A7L3 16713583
    163101 4v4v:BQ (15.0) BS01 rna ? GO:0002181 ... P61175 16713583
    163102 4v4v:BR (15.0) BS01 rna ? GO:0000027 ... P0ADZ0 16713583
    163103 4v4v:BS (15.0) BS01 rna ? GO:0000027 ... P60624 16713583
    163104 4v4v:BT (15.0) BS01 rna ? GO:0000027 ... P68919 16713583
    163105 4v4v:BU (15.0) BS01 rna ? GO:0000027 ... P0A7L8 16713583
    163106 4v4v:BU (15.0) BS02 rna ? GO:0000027 ... P0A7L8 16713583
    163107 4v4v:BW (15.0) BS01 rna ? GO:0000027 ... P0A7M6 16713583
    163108 4v4v:BX (15.0) BS01 rna ? GO:0000027 ... P0AG51 16713583
    163109 4v4w:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 16713583
    163110 4v4w:AE (15.0) BS01 rna ? GO:0003723 ... P0A7W1 16713583
    163111 4v4w:AG (15.0) BS01 rna ? GO:0003723 ... P02359 16713583
    163112 4v4w:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 16713583
    163113 4v4w:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 16713583
    163114 4v4w:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 16713583
    163115 4v4w:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 16713583
    163116 4v4w:AL (15.0) BS01 rna ? GO:0003735 ... P0A7S3 16713583
    163117 4v4w:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 16713583
    163118 4v4w:AN (15.0) BS01 rna ? GO:0003735 ... P0AG59 16713583
    163119 4v4w:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 16713583
    163120 4v4w:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 16713583
    163121 4v4w:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 16713583
    163122 4v4w:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 16713583
    163123 4v4w:AR (15.0) BS01 rna ? GO:0002181 ... P0A7T7 16713583
    163124 4v4w:AS (15.0) BS01 rna ? GO:0000028 ... P0A7U3 16713583
    163125 4v4w:AS (15.0) BS02 rna ? GO:0000028 ... P0A7U3 16713583
    163126 4v4w:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 16713583
    163127 4v4w:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 16713583
    163128 4v4w:B1 (15.0) BS02 rna ? GO:0000027 ... P0A7N9 16713583
    163129 4v4w:B2 (15.0) BS01 rna ? GO:0000027 ... P0A7L0 16713583
    163130 4v4w:B3 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    163131 4v4w:B5 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    163132 4v4w:BA (15.0) BS01 rna ? GO:0003723 ... P60422 16713583
    163133 4v4w:BB (15.0) BS01 rna ? GO:0000027 ... P60438 16713583
    163134 4v4w:BC (15.0) BS01 rna ? GO:0001070 ... P60723 16713583
    163135 4v4w:BD (15.0) BS01 rna ? GO:0000027 ... P62399 16713583
    163136 4v4w:BE (15.0) BS01 rna ? GO:0000027 ... P0AG55 16713583
    163137 4v4w:BG (15.0) BS01 rna ? GO:0000027 ... P0A7J7 16713583
    163138 4v4w:BH (15.0) BS01 rna ? GO:0002181 ... P0AA10 16713583
    163139 4v4w:BI (15.0) BS01 rna ? GO:0002181 ... P0ADY3 16713583
    163140 4v4w:BI (15.0) BS02 rna ? GO:0002181 ... P0ADY3 16713583
    163141 4v4w:BJ (15.0) BS01 rna ? GO:0002181 ... P02413 16713583
    163142 4v4w:BK (15.0) BS01 rna ? GO:0000027 ... P0ADY7 16713583
    163143 4v4w:BL (15.0) BS01 rna ? GO:0000027 ... P0AG44 16713583
    163144 4v4w:BL (15.0) BS02 peptide ? GO:0000027 ... P0AG44 16713583
    163145 4v4w:BM (15.0) BS01 rna ? GO:0002181 ... P0C018 16713583
    163146 4v4w:BM (15.0) BS02 rna ? GO:0002181 ... P0C018 16713583
    163147 4v4w:BN (15.0) BS01 rna ? GO:0000027 ... P0A7K6 16713583
    163148 4v4w:BN (15.0) BS02 rna ? GO:0000027 ... P0A7K6 16713583
    163149 4v4w:BO (15.0) BS01 rna ? GO:0000027 ... P0A7L3 16713583
    163150 4v4w:BQ (15.0) BS01 rna ? GO:0002181 ... P61175 16713583
    163151 4v4w:BR (15.0) BS01 rna ? GO:0000027 ... P0ADZ0 16713583
    163152 4v4w:BS (15.0) BS01 rna ? GO:0000027 ... P60624 16713583
    163153 4v4w:BT (15.0) BS01 rna ? GO:0000027 ... P68919 16713583
    163154 4v4w:BU (15.0) BS01 rna ? GO:0000027 ... P0A7L8 16713583
    163155 4v4w:BW (15.0) BS01 rna ? GO:0000027 ... P0A7M6 16713583
    163156 4v4w:BX (15.0) BS01 rna ? GO:0000027 ... P0AG51 16713583
    163157 4v4x:AE (5.0) BS01 rna ? GO:0003735 ... P80371 17051149
    163158 4v4x:AF (5.0) BS01 rna ? GO:0003676 ... P80372 17051149
    163159 4v4x:AG (5.0) BS01 rna ? GO:0003723 ... P80373 17051149
    163160 4v4x:AH (5.0) BS01 rna ? GO:0003723 ... Q5SHQ5 17051149
    163161 4v4x:AI (5.0) BS01 rna ? GO:0003735 ... Q5SLP8 17051149
    163162 4v4x:AJ (5.0) BS01 rna ? GO:0000028 ... P17291 17051149
    163163 4v4x:AJ (5.0) BS02 rna ? GO:0000028 ... P17291 17051149
    163164 4v4x:AK (5.0) BS01 rna N/A GO:0003735 ... N/A 17051149
    163165 4v4x:AL (5.0) BS01 rna ? GO:0000049 ... P80374 17051149
    163166 4v4x:AL (5.0) BS02 rna ? GO:0000049 ... P80374 17051149
    163167 4v4x:AM (5.0) BS01 rna ? GO:0000049 ... Q5SHN7 17051149
    163168 4v4x:AN (5.0) BS01 rna ? GO:0003735 ... P80376 17051149
    163169 4v4x:AO (5.0) BS01 rna ? GO:0000049 ... Q5SHN3 17051149
    163170 4v4x:AP (5.0) BS01 rna ? GO:0000049 ... P80377 17051149
    163171 4v4x:AP (5.0) BS02 rna ? GO:0000049 ... P80377 17051149
    163172 4v4x:AQ (5.0) BS01 rna N/A GO:0003735 ... N/A 17051149
    163173 4v4x:AR (5.0) BS01 rna ? GO:0003735 ... Q5SJ76 17051149
    163174 4v4x:AR (5.0) BS02 rna ? GO:0003735 ... Q5SJ76 17051149
    163175 4v4x:AS (5.0) BS01 rna ? GO:0003735 ... Q5SJH3 17051149
    163176 4v4x:AT (5.0) BS01 rna ? GO:0003735 ... P24321 17051149
    163177 4v4x:AU (5.0) BS01 rna ? GO:0003735 ... P80382 17051149
    163178 4v4x:AV (5.0) BS01 rna ? GO:0000028 ... Q5SHP2 17051149
    163179 4v4x:AW (5.0) BS01 rna ? GO:0003723 ... P80380 17051149
    163180 4v4x:B1 (5.0) BS01 rna ? GO:0003735 ... Q9LCY4 17051149
    163181 4v4x:B2 (5.0) BS01 rna ? GO:0003735 ... Q5SHQ6 17051149
    163182 4v4x:B3 (5.0) BS01 rna ? GO:0003735 ... Q5SJE1 17051149
    163183 4v4x:B3 (5.0) BS02 rna ? GO:0003735 ... Q5SJE1 17051149
    163184 4v4x:B4 (5.0) BS01 rna ? GO:0003735 ... P80339 17051149
    163185 4v4x:B5 (5.0) BS01 rna ? GO:0000049 ... P35871 17051149
    163186 4v4x:B6 (5.0) BS01 rna ? GO:0003735 ... P80340 17051149
    163187 4v4x:B7 (5.0) BS01 rna ? GO:0003735 ... Q5SKU1 17051149
    163188 4v4x:B8 (5.0) BS01 rna ? GO:0003735 ... Q5SHR2 17051149
    163189 4v4x:BC (5.0) BS01 rna ? GO:0000049 ... P27150 17051149
    163190 4v4x:BC (5.0) BS02 rna ? GO:0000049 ... P27150 17051149
    163191 4v4x:BD (5.0) BS01 rna ? GO:0002181 ... P60405 17051149
    163192 4v4x:BD (5.0) BS02 rna ? GO:0002181 ... P60405 17051149
    163193 4v4x:BE (5.0) BS01 rna ? GO:0003735 ... Q5SHN8 17051149
    163194 4v4x:BF (5.0) BS01 rna ? GO:0003735 ... Q5SHN9 17051149
    163195 4v4x:BG (5.0) BS01 rna ? GO:0000049 ... Q5SHQ0 17051149
    163196 4v4x:BG (5.0) BS02 rna ? GO:0000049 ... Q5SHQ0 17051149
    163197 4v4x:BG (5.0) BS03 rna ? GO:0000049 ... Q5SHQ0 17051149
    163198 4v4x:BH (5.0) BS01 rna ? GO:0002181 ... P0DOY8 17051149
    163199 4v4x:BK (5.0) BS01 rna ? GO:0003735 ... P27151 17051149
    163200 4v4x:BL (5.0) BS01 rna ? GO:0003735 ... Q5SLP6 17051149
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417