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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162801 4v4q:CD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16272117
    162802 4v4q:CE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16272117
    162803 4v4q:CF (3.46) BS01 rna ? GO:0002181 ... P02358 16272117
    162804 4v4q:CG (3.46) BS01 rna ? GO:0000028 ... P02359 16272117
    162805 4v4q:CH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16272117
    162806 4v4q:CI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16272117
    162807 4v4q:CJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16272117
    162808 4v4q:CJ (3.46) BS02 rna ? GO:0000049 ... P0A7R5 16272117
    162809 4v4q:CK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16272117
    162810 4v4q:CL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16272117
    162811 4v4q:CM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16272117
    162812 4v4q:CN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16272117
    162813 4v4q:CO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16272117
    162814 4v4q:CO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16272117
    162815 4v4q:CP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16272117
    162816 4v4q:CQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16272117
    162817 4v4q:CR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16272117
    162818 4v4q:CS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16272117
    162819 4v4q:CT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16272117
    162820 4v4q:CU (3.46) BS01 rna ? GO:0000028 ... P68679 16272117
    162821 4v4q:D0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16272117
    162822 4v4q:D1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16272117
    162823 4v4q:D2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16272117
    162824 4v4q:D3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16272117
    162825 4v4q:D4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16272117
    162826 4v4q:DC (3.46) BS01 rna ? GO:0000027 ... P60422 16272117
    162827 4v4q:DD (3.46) BS01 rna ? GO:0000027 ... P60438 16272117
    162828 4v4q:DE (3.46) BS01 rna ? GO:0001070 ... P60723 16272117
    162829 4v4q:DF (3.46) BS01 rna ? GO:0000027 ... P62399 16272117
    162830 4v4q:DF (3.46) BS02 rna ? GO:0000027 ... P62399 16272117
    162831 4v4q:DG (3.46) BS01 rna ? GO:0000027 ... P0AG55 16272117
    162832 4v4q:DH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16272117
    162833 4v4q:DI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16272117
    162834 4v4q:DJ (3.46) BS01 rna ? GO:0002181 ... P0AA10 16272117
    162835 4v4q:DK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16272117
    162836 4v4q:DK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16272117
    162837 4v4q:DL (3.46) BS01 rna ? GO:0002181 ... P02413 16272117
    162838 4v4q:DM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16272117
    162839 4v4q:DN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16272117
    162840 4v4q:DO (3.46) BS01 rna ? GO:0002181 ... P0C018 16272117
    162841 4v4q:DO (3.46) BS02 rna ? GO:0002181 ... P0C018 16272117
    162842 4v4q:DP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16272117
    162843 4v4q:DP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16272117
    162844 4v4q:DQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16272117
    162845 4v4q:DR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16272117
    162846 4v4q:DS (3.46) BS01 rna ? GO:0002181 ... P61175 16272117
    162847 4v4q:DT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16272117
    162848 4v4q:DU (3.46) BS01 rna ? GO:0000027 ... P60624 16272117
    162849 4v4q:DV (3.46) BS01 rna ? GO:0000027 ... P68919 16272117
    162850 4v4q:DV (3.46) BS02 rna ? GO:0000027 ... P68919 16272117
    162851 4v4q:DW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16272117
    162852 4v4q:DX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16272117
    162853 4v4q:DY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16272117
    162854 4v4q:DY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16272117
    162855 4v4q:DZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16272117
    162856 4v4r:AB (5.9) BS01 rna ? GO:0003735 ... P80371 16377566
    162857 4v4r:AC (5.9) BS01 rna ? GO:0003676 ... P80372 16377566
    162858 4v4r:AD (5.9) BS01 rna ? GO:0003723 ... P80373 16377566
    162859 4v4r:AE (5.9) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    162860 4v4r:AF (5.9) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    162861 4v4r:AG (5.9) BS01 rna ? GO:0000028 ... P17291 16377566
    162862 4v4r:AG (5.9) BS02 rna ? GO:0000028 ... P17291 16377566
    162863 4v4r:AH (5.9) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    162864 4v4r:AI (5.9) BS01 rna ? GO:0000049 ... P80374 16377566
    162865 4v4r:AI (5.9) BS02 rna ? GO:0000049 ... P80374 16377566
    162866 4v4r:AJ (5.9) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    162867 4v4r:AK (5.9) BS01 rna ? GO:0003735 ... P80376 16377566
    162868 4v4r:AL (5.9) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    162869 4v4r:AM (5.9) BS01 rna ? GO:0000049 ... P80377 16377566
    162870 4v4r:AM (5.9) BS02 rna ? GO:0000049 ... P80377 16377566
    162871 4v4r:AN (5.9) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    162872 4v4r:AO (5.9) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    162873 4v4r:AP (5.9) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    162874 4v4r:AQ (5.9) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    162875 4v4r:AR (5.9) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    162876 4v4r:AS (5.9) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    162877 4v4r:AT (5.9) BS01 rna ? GO:0003723 ... P80380 16377566
    162878 4v4r:AY (5.9) BS01 rna ? GO:0003747 ... P96077 16377566
    162879 4v4r:AY (5.9) BS02 rna ? GO:0003747 ... P96077 16377566
    162880 4v4r:AY (5.9) BS03 rna ? GO:0003747 ... P96077 16377566
    162881 4v4r:B0 (5.9) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    162882 4v4r:B0 (5.9) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    162883 4v4r:B2 (5.9) BS01 rna ? GO:0003735 ... P10971 16377566
    162884 4v4r:B3 (5.9) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    162885 4v4r:B3 (5.9) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    162886 4v4r:B4 (5.9) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    162887 4v4r:B4 (5.9) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    162888 4v4r:B5 (5.9) BS01 rna ? GO:0003735 ... P49228 16377566
    162889 4v4r:B6 (5.9) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    162890 4v4r:B7 (5.9) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    162891 4v4r:B8 (5.9) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    162892 4v4r:B8 (5.9) BS02 rna ? GO:0003735 ... Q9RSW6 16377566
    162893 4v4r:B9 (5.9) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    162894 4v4r:BD (5.9) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    162895 4v4r:BE (5.9) BS01 rna ? GO:0003723 ... P20279 16377566
    162896 4v4r:BF (5.9) BS01 rna ? GO:0003723 ... P12735 16377566
    162897 4v4r:BG (5.9) BS01 rna ? GO:0000049 ... P14124 16377566
    162898 4v4r:BG (5.9) BS02 rna ? GO:0000049 ... P14124 16377566
    162899 4v4r:BH (5.9) BS01 rna ? GO:0002181 ... Q5L408 16377566
    162900 4v4r:BI (5.9) BS01 rna ? GO:0003735 ... P02417 16377566
    162901 4v4r:BK (5.9) BS01 rna ? GO:0003735 ... P29395 16377566
    162902 4v4r:BN (5.9) BS01 rna ? GO:0003729 ... P29198 16377566
    162903 4v4r:BO (5.9) BS01 rna ? GO:0003735 ... Q5L413 16377566
    162904 4v4r:BO (5.9) BS02 rna ? GO:0003735 ... Q5L413 16377566
    162905 4v4r:BP (5.9) BS01 rna ? GO:0003735 ... P12737 16377566
    162906 4v4r:BQ (5.9) BS01 rna N/A GO:0003735 ... N/A 16377566
    162907 4v4r:BQ (5.9) BS02 rna N/A GO:0003735 ... N/A 16377566
    162908 4v4r:BQ (5.9) BS03 rna N/A GO:0003735 ... N/A 16377566
    162909 4v4r:BR (5.9) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    162910 4v4r:BS (5.9) BS01 rna ? GO:0000027 ... P14123 16377566
    162911 4v4r:BS (5.9) BS02 rna ? GO:0000027 ... P14123 16377566
    162912 4v4r:BT (5.9) BS01 rna ? GO:0003735 ... P14116 16377566
    162913 4v4r:BT (5.9) BS02 rna ? GO:0003735 ... P14116 16377566
    162914 4v4r:BU (5.9) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    162915 4v4r:BV (5.9) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    162916 4v4r:BW (5.9) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    162917 4v4r:BX (5.9) BS01 rna ? GO:0000027 ... P12732 16377566
    162918 4v4r:BY (5.9) BS01 rna ? GO:0002181 ... P10972 16377566
    162919 4v4r:BZ (5.9) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    162920 4v4r:BZ (5.9) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    162921 4v4s:AB (6.76) BS01 rna ? GO:0003735 ... P80371 16377566
    162922 4v4s:AC (6.76) BS01 rna ? GO:0003676 ... P80372 16377566
    162923 4v4s:AD (6.76) BS01 rna ? GO:0003723 ... P80373 16377566
    162924 4v4s:AE (6.76) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    162925 4v4s:AF (6.76) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    162926 4v4s:AG (6.76) BS01 rna ? GO:0000028 ... P17291 16377566
    162927 4v4s:AG (6.76) BS02 rna ? GO:0000028 ... P17291 16377566
    162928 4v4s:AH (6.76) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    162929 4v4s:AI (6.76) BS01 rna ? GO:0000049 ... P80374 16377566
    162930 4v4s:AI (6.76) BS02 rna ? GO:0000049 ... P80374 16377566
    162931 4v4s:AJ (6.76) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    162932 4v4s:AK (6.76) BS01 rna ? GO:0003735 ... P80376 16377566
    162933 4v4s:AL (6.76) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    162934 4v4s:AM (6.76) BS01 rna ? GO:0000049 ... P80377 16377566
    162935 4v4s:AM (6.76) BS02 rna ? GO:0000049 ... P80377 16377566
    162936 4v4s:AN (6.76) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    162937 4v4s:AO (6.76) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    162938 4v4s:AP (6.76) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    162939 4v4s:AQ (6.76) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    162940 4v4s:AR (6.76) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    162941 4v4s:AS (6.76) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    162942 4v4s:AT (6.76) BS01 rna ? GO:0003723 ... P80380 16377566
    162943 4v4s:AY (6.76) BS01 rna ? GO:0000049 ... Q5SM01 16377566
    162944 4v4s:AY (6.76) BS02 rna ? GO:0000049 ... Q5SM01 16377566
    162945 4v4s:B0 (6.76) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    162946 4v4s:B0 (6.76) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    162947 4v4s:B2 (6.76) BS01 rna ? GO:0003735 ... P10971 16377566
    162948 4v4s:B3 (6.76) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    162949 4v4s:B3 (6.76) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    162950 4v4s:B4 (6.76) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    162951 4v4s:B4 (6.76) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    162952 4v4s:B5 (6.76) BS01 rna ? GO:0003735 ... P49228 16377566
    162953 4v4s:B6 (6.76) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    162954 4v4s:B7 (6.76) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    162955 4v4s:B8 (6.76) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    162956 4v4s:B9 (6.76) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    162957 4v4s:BD (6.76) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    162958 4v4s:BE (6.76) BS01 rna ? GO:0003723 ... P20279 16377566
    162959 4v4s:BF (6.76) BS01 rna ? GO:0003723 ... P12735 16377566
    162960 4v4s:BG (6.76) BS01 rna ? GO:0000049 ... P14124 16377566
    162961 4v4s:BG (6.76) BS02 rna ? GO:0000049 ... P14124 16377566
    162962 4v4s:BG (6.76) BS03 rna ? GO:0000049 ... P14124 16377566
    162963 4v4s:BH (6.76) BS01 rna ? GO:0002181 ... Q5L408 16377566
    162964 4v4s:BI (6.76) BS01 rna ? GO:0003735 ... P02417 16377566
    162965 4v4s:BK (6.76) BS01 rna ? GO:0003735 ... P29395 16377566
    162966 4v4s:BN (6.76) BS01 rna ? GO:0003729 ... P29198 16377566
    162967 4v4s:BO (6.76) BS01 rna ? GO:0003735 ... Q5L413 16377566
    162968 4v4s:BO (6.76) BS02 rna ? GO:0003735 ... Q5L413 16377566
    162969 4v4s:BP (6.76) BS01 rna ? GO:0003735 ... P12737 16377566
    162970 4v4s:BQ (6.76) BS01 rna N/A GO:0003735 ... N/A 16377566
    162971 4v4s:BQ (6.76) BS02 rna N/A GO:0003735 ... N/A 16377566
    162972 4v4s:BR (6.76) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    162973 4v4s:BS (6.76) BS01 rna ? GO:0000027 ... P14123 16377566
    162974 4v4s:BS (6.76) BS02 rna ? GO:0000027 ... P14123 16377566
    162975 4v4s:BT (6.76) BS01 rna ? GO:0003735 ... P14116 16377566
    162976 4v4s:BU (6.76) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    162977 4v4s:BV (6.76) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    162978 4v4s:BW (6.76) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    162979 4v4s:BX (6.76) BS01 rna ? GO:0000027 ... P12732 16377566
    162980 4v4s:BY (6.76) BS01 rna ? GO:0002181 ... P10972 16377566
    162981 4v4s:BZ (6.76) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    162982 4v4s:BZ (6.76) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    162983 4v4t:AB (6.46) BS01 rna ? GO:0003735 ... P80371 16377566
    162984 4v4t:AC (6.46) BS01 rna ? GO:0003676 ... P80372 16377566
    162985 4v4t:AD (6.46) BS01 rna ? GO:0003723 ... P80373 16377566
    162986 4v4t:AE (6.46) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    162987 4v4t:AF (6.46) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    162988 4v4t:AG (6.46) BS01 rna ? GO:0000028 ... P17291 16377566
    162989 4v4t:AG (6.46) BS02 rna ? GO:0000028 ... P17291 16377566
    162990 4v4t:AH (6.46) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    162991 4v4t:AI (6.46) BS01 rna ? GO:0000049 ... P80374 16377566
    162992 4v4t:AI (6.46) BS02 rna ? GO:0000049 ... P80374 16377566
    162993 4v4t:AJ (6.46) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    162994 4v4t:AK (6.46) BS01 rna ? GO:0003735 ... P80376 16377566
    162995 4v4t:AL (6.46) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    162996 4v4t:AM (6.46) BS01 rna ? GO:0000049 ... P80377 16377566
    162997 4v4t:AM (6.46) BS02 rna ? GO:0000049 ... P80377 16377566
    162998 4v4t:AM (6.46) BS03 rna ? GO:0000049 ... P80377 16377566
    162999 4v4t:AN (6.46) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    163000 4v4t:AO (6.46) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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