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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162601 4v4n:AF (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162602 4v4n:AG (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162603 4v4n:AH (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162604 4v4n:AI (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162605 4v4n:AJ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162606 4v4n:AK (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162607 4v4n:AL (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162608 4v4n:AM (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162609 4v4n:AN (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162610 4v4n:AO (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162611 4v4n:AO (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    162612 4v4n:AP (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162613 4v4n:AQ (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162614 4v4n:AR (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162615 4v4n:AR (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    162616 4v4n:AS (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162617 4v4n:AT (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162618 4v4n:AU (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162619 4v4n:AV (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162620 4v4n:AW (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162621 4v4n:AX (9.0) BS01 rna ? GO:0005048 ... Q60175 24153188
    162622 4v4n:AY (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162623 4v4n:AY (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    162624 4v4n:AZ (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162625 4v4n:Aa (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162626 4v4n:Ab (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162627 4v4n:Ad (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162628 4v4n:Ae (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162629 4v4n:Af (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162630 4v4n:Ag (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162631 4v4n:Ai (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162632 4v4n:Aj (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162633 4v4n:B3 (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162634 4v4n:BA (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162635 4v4n:BB (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162636 4v4n:BC (9.0) BS01 rna N/A GO:0003676 ... N/A 24153188
    162637 4v4n:BD (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162638 4v4n:BE (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162639 4v4n:BF (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162640 4v4n:BG (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162641 4v4n:BH (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162642 4v4n:BI (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162643 4v4n:BJ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162644 4v4n:BK (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162645 4v4n:BL (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162646 4v4n:BM (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162647 4v4n:BN (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162648 4v4n:BO (9.0) BS01 rna N/A GO:0003676 ... N/A 24153188
    162649 4v4n:BP (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162650 4v4n:BQ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162651 4v4n:BR (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162652 4v4n:BS (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162653 4v4n:BT (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162654 4v4n:BU (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162655 4v4n:BV (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162656 4v4n:BW (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162657 4v4n:BX (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162658 4v4n:BY (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162659 4v4o:A (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162660 4v4o:B (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162661 4v4o:C (2.8) BS01 MG 5.6.1.7 GO:0005524 ... P61490 15296740
    162662 4v4o:C (2.8) BS02 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162663 4v4o:D (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162664 4v4o:E (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162665 4v4o:F (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162666 4v4o:G (2.8) BS01 MG 5.6.1.7 GO:0005524 ... P61490 15296740
    162667 4v4o:G (2.8) BS02 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162668 4v4o:a (2.8) BS01 MG 5.6.1.7 GO:0005524 ... P61490 15296740
    162669 4v4o:a (2.8) BS02 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162670 4v4o:b (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162671 4v4o:c (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162672 4v4o:d (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162673 4v4o:e (2.8) BS01 MG 5.6.1.7 GO:0005524 ... P61490 15296740
    162674 4v4o:e (2.8) BS02 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162675 4v4o:f (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162676 4v4o:g (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    162677 4v4p:A0 (5.5) BS01 rna ? GO:0003735 ... Q9Z9H5 15802605
    162678 4v4p:A1 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162679 4v4p:A2 (5.5) BS01 rna N/A GO:0003723 ... N/A 15802605
    162680 4v4p:A3 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162681 4v4p:A3 (5.5) BS02 rna N/A GO:0003735 ... N/A 15802605
    162682 4v4p:A3 (5.5) BS03 rna N/A GO:0003735 ... N/A 15802605
    162683 4v4p:A4 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162684 4v4p:A5 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162685 4v4p:A6 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162686 4v4p:A7 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162687 4v4p:A8 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162688 4v4p:A9 (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162689 4v4p:AC (5.5) BS01 rna ? GO:0000049 ... P27150 15802605
    162690 4v4p:AD (5.5) BS01 rna ? GO:0003723 ... P60405 15802605
    162691 4v4p:AE (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162692 4v4p:AF (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162693 4v4p:AG (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162694 4v4p:AG (5.5) BS02 rna N/A GO:0003735 ... N/A 15802605
    162695 4v4p:AH (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162696 4v4p:AI (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162697 4v4p:AK (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162698 4v4p:AL (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162699 4v4p:AM (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162700 4v4p:AN (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162701 4v4p:AO (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162702 4v4p:AP (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162703 4v4p:AP (5.5) BS02 rna N/A GO:0003735 ... N/A 15802605
    162704 4v4p:AQ (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162705 4v4p:AQ (5.5) BS02 rna N/A GO:0003735 ... N/A 15802605
    162706 4v4p:AR (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162707 4v4p:AS (5.5) BS01 rna ? GO:0003735 ... Q5SHP3 15802605
    162708 4v4p:AT (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162709 4v4p:AU (5.5) BS01 rna N/A GO:0003723 ... N/A 15802605
    162710 4v4p:AV (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162711 4v4p:AV (5.5) BS02 rna N/A GO:0003735 ... N/A 15802605
    162712 4v4p:AW (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162713 4v4p:AX (5.5) BS01 rna ? GO:0003735 ... Q5SHQ6 15802605
    162714 4v4p:BE (5.5) BS01 rna ? GO:0003735 ... P80371 15802605
    162715 4v4p:BF (5.5) BS01 rna ? GO:0003676 ... P80372 15802605
    162716 4v4p:BF (5.5) BS02 rna ? GO:0003676 ... P80372 15802605
    162717 4v4p:BG (5.5) BS01 rna ? GO:0003723 ... P80373 15802605
    162718 4v4p:BH (5.5) BS01 rna ? GO:0003723 ... Q5SHQ5 15802605
    162719 4v4p:BI (5.5) BS01 rna ? GO:0003735 ... Q5SLP8 15802605
    162720 4v4p:BJ (5.5) BS01 rna ? GO:0000028 ... P17291 15802605
    162721 4v4p:BK (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162722 4v4p:BL (5.5) BS01 rna ? GO:0000049 ... P80374 15802605
    162723 4v4p:BL (5.5) BS02 rna ? GO:0000049 ... P80374 15802605
    162724 4v4p:BM (5.5) BS01 rna ? GO:0000049 ... Q5SHN7 15802605
    162725 4v4p:BN (5.5) BS01 rna ? GO:0003735 ... P80376 15802605
    162726 4v4p:BO (5.5) BS01 rna ? GO:0000049 ... Q5SHN3 15802605
    162727 4v4p:BP (5.5) BS01 rna ? GO:0000049 ... P80377 15802605
    162728 4v4p:BP (5.5) BS02 rna ? GO:0000049 ... P80377 15802605
    162729 4v4p:BP (5.5) BS03 rna ? GO:0000049 ... P80377 15802605
    162730 4v4p:BP (5.5) BS04 rna ? GO:0000049 ... P80377 15802605
    162731 4v4p:BQ (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162732 4v4p:BR (5.5) BS01 rna ? GO:0003735 ... Q5SJ76 15802605
    162733 4v4p:BR (5.5) BS02 rna ? GO:0003735 ... Q5SJ76 15802605
    162734 4v4p:BS (5.5) BS01 rna ? GO:0003735 ... Q5SJH3 15802605
    162735 4v4p:BT (5.5) BS01 rna N/A GO:0003735 ... N/A 15802605
    162736 4v4p:BU (5.5) BS01 rna ? GO:0003735 ... Q5SLQ0 15802605
    162737 4v4p:BV (5.5) BS01 rna ? GO:0000028 ... Q5SHP2 15802605
    162738 4v4p:BW (5.5) BS01 rna ? GO:0003723 ... P80380 15802605
    162739 4v4q:AB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16272117
    162740 4v4q:AC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16272117
    162741 4v4q:AD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16272117
    162742 4v4q:AE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16272117
    162743 4v4q:AF (3.46) BS01 rna ? GO:0002181 ... P02358 16272117
    162744 4v4q:AG (3.46) BS01 rna ? GO:0000028 ... P02359 16272117
    162745 4v4q:AH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16272117
    162746 4v4q:AI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16272117
    162747 4v4q:AJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16272117
    162748 4v4q:AK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16272117
    162749 4v4q:AK (3.46) BS02 rna ? GO:0002181 ... P0A7R9 16272117
    162750 4v4q:AL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16272117
    162751 4v4q:AM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16272117
    162752 4v4q:AN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16272117
    162753 4v4q:AO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16272117
    162754 4v4q:AO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16272117
    162755 4v4q:AP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16272117
    162756 4v4q:AQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16272117
    162757 4v4q:AR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16272117
    162758 4v4q:AS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16272117
    162759 4v4q:AT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16272117
    162760 4v4q:AU (3.46) BS01 rna ? GO:0000028 ... P68679 16272117
    162761 4v4q:B0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16272117
    162762 4v4q:B1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16272117
    162763 4v4q:B2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16272117
    162764 4v4q:B3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16272117
    162765 4v4q:B4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16272117
    162766 4v4q:BC (3.46) BS01 rna ? GO:0000027 ... P60422 16272117
    162767 4v4q:BD (3.46) BS01 rna ? GO:0000027 ... P60438 16272117
    162768 4v4q:BE (3.46) BS01 rna ? GO:0001070 ... P60723 16272117
    162769 4v4q:BF (3.46) BS01 rna ? GO:0000027 ... P62399 16272117
    162770 4v4q:BF (3.46) BS02 rna ? GO:0000027 ... P62399 16272117
    162771 4v4q:BG (3.46) BS01 rna ? GO:0000027 ... P0AG55 16272117
    162772 4v4q:BH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16272117
    162773 4v4q:BH (3.46) BS02 rna ? GO:0002181 ... P0A7R1 16272117
    162774 4v4q:BI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16272117
    162775 4v4q:BJ (3.46) BS01 rna ? GO:0002181 ... P0AA10 16272117
    162776 4v4q:BK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16272117
    162777 4v4q:BK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16272117
    162778 4v4q:BL (3.46) BS01 rna ? GO:0002181 ... P02413 16272117
    162779 4v4q:BM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16272117
    162780 4v4q:BM (3.46) BS02 rna ? GO:0000027 ... P0ADY7 16272117
    162781 4v4q:BN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16272117
    162782 4v4q:BO (3.46) BS01 rna ? GO:0002181 ... P0C018 16272117
    162783 4v4q:BO (3.46) BS02 rna ? GO:0002181 ... P0C018 16272117
    162784 4v4q:BP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16272117
    162785 4v4q:BP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16272117
    162786 4v4q:BQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16272117
    162787 4v4q:BR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16272117
    162788 4v4q:BS (3.46) BS01 rna ? GO:0002181 ... P61175 16272117
    162789 4v4q:BT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16272117
    162790 4v4q:BU (3.46) BS01 rna ? GO:0000027 ... P60624 16272117
    162791 4v4q:BV (3.46) BS01 rna ? GO:0000027 ... P68919 16272117
    162792 4v4q:BV (3.46) BS02 rna ? GO:0000027 ... P68919 16272117
    162793 4v4q:BW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16272117
    162794 4v4q:BW (3.46) BS02 rna ? GO:0000027 ... P0A7L8 16272117
    162795 4v4q:BX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16272117
    162796 4v4q:BY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16272117
    162797 4v4q:BY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16272117
    162798 4v4q:BZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16272117
    162799 4v4q:CB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16272117
    162800 4v4q:CC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16272117
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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