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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162401 4v4h:DQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16998486
    162402 4v4h:DR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16998486
    162403 4v4h:DS (3.46) BS01 rna ? GO:0002181 ... P61175 16998486
    162404 4v4h:DT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16998486
    162405 4v4h:DU (3.46) BS01 rna ? GO:0000027 ... P60624 16998486
    162406 4v4h:DV (3.46) BS01 rna ? GO:0000027 ... P68919 16998486
    162407 4v4h:DW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16998486
    162408 4v4h:DX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16998486
    162409 4v4h:DY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16998486
    162410 4v4h:DY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16998486
    162411 4v4h:DZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16998486
    162412 4v4i:A (3.71) BS01 rna ? GO:0000049 ... Q5SLP7 16962654
    162413 4v4i:A (3.71) BS02 rna ? GO:0000049 ... Q5SLP7 16962654
    162414 4v4i:B (3.71) BS01 rna ? GO:0002181 ... P60405 16962654
    162415 4v4i:B (3.71) BS02 rna ? GO:0002181 ... P60405 16962654
    162416 4v4i:C (3.71) BS01 rna ? GO:0003735 ... Q5SHN8 16962654
    162417 4v4i:D (3.71) BS01 rna ? GO:0003735 ... Q5SHN9 16962654
    162418 4v4i:E (3.71) BS01 rna ? GO:0000049 ... Q5SHQ0 16962654
    162419 4v4i:E (3.71) BS02 rna ? GO:0000049 ... Q5SHQ0 16962654
    162420 4v4i:E (3.71) BS03 rna ? GO:0000049 ... Q5SHQ0 16962654
    162421 4v4i:F (3.71) BS01 rna ? GO:0002181 ... P0DOY8 16962654
    162422 4v4i:G (3.71) BS01 rna ? GO:0003735 ... Q5SLQ1 16962654
    162423 4v4i:H (3.71) BS01 rna ? GO:0003729 ... P60488 16962654
    162424 4v4i:I (3.71) BS01 rna ? GO:0003735 ... Q5SHP8 16962654
    162425 4v4i:I (3.71) BS02 rna ? GO:0003735 ... Q5SHP8 16962654
    162426 4v4i:J (3.71) BS01 rna ? GO:0003735 ... Q5SHQ7 16962654
    162427 4v4i:K (3.71) BS01 rna ? GO:0000049 ... P60489 16962654
    162428 4v4i:L (3.71) BS01 rna ? GO:0003735 ... Q9Z9H5 16962654
    162429 4v4i:M (3.71) BS01 rna ? GO:0003735 ... Q5SHQ4 16962654
    162430 4v4i:M (3.71) BS02 rna ? GO:0003735 ... Q5SHQ4 16962654
    162431 4v4i:N (3.71) BS01 rna ? GO:0003735 ... P60490 16962654
    162432 4v4i:N (3.71) BS02 rna ? GO:0003735 ... P60490 16962654
    162433 4v4i:O (3.71) BS01 rna ? GO:0000027 ... P60491 16962654
    162434 4v4i:P (3.71) BS01 rna ? GO:0003723 ... P60492 16962654
    162435 4v4i:Q (3.71) BS01 rna ? GO:0003735 ... Q5SHP3 16962654
    162436 4v4i:R (3.71) BS01 rna ? GO:0000027 ... Q5SHP0 16962654
    162437 4v4i:S (3.71) BS01 rna ? GO:0003723 ... Q5SHP9 16962654
    162438 4v4i:T (3.71) BS01 rna ? GO:0003723 ... Q5SHZ1 16962654
    162439 4v4i:T (3.71) BS02 rna ? GO:0003723 ... Q5SHZ1 16962654
    162440 4v4i:U (3.71) BS01 rna ? GO:0003735 ... P60493 16962654
    162441 4v4i:U (3.71) BS02 rna ? GO:0003735 ... P60493 16962654
    162442 4v4i:V (3.71) BS01 rna ? GO:0003735 ... P60494 16962654
    162443 4v4i:V (3.71) BS02 rna ? GO:0003735 ... P60494 16962654
    162444 4v4i:W (3.71) BS01 rna ? GO:0003735 ... Q5SHP6 16962654
    162445 4v4i:X (3.71) BS01 rna ? GO:0003735 ... Q5SHQ6 16962654
    162446 4v4i:X (3.71) BS02 rna ? GO:0003735 ... Q5SHQ6 16962654
    162447 4v4i:Y (3.71) BS01 rna ? GO:0003735 ... P80339 16962654
    162448 4v4i:Z (3.71) BS01 rna ? GO:0003735 ... P80340 16962654
    162449 4v4i:a (3.71) BS01 rna ? GO:0003735 ... Q5SKU1 16962654
    162450 4v4i:b (3.71) BS01 rna ? GO:0003735 ... Q5SHR2 16962654
    162451 4v4i:c (3.71) BS01 rna ? GO:0003735 ... P80371 16962654
    162452 4v4i:d (3.71) BS01 rna ? GO:0003676 ... P80372 16962654
    162453 4v4i:e (3.71) BS01 rna ? GO:0003723 ... P80373 16962654
    162454 4v4i:f (3.71) BS01 rna ? GO:0003723 ... Q5SHQ5 16962654
    162455 4v4i:g (3.71) BS01 rna ? GO:0003735 ... Q5SLP8 16962654
    162456 4v4i:h (3.71) BS01 rna ? GO:0000028 ... P17291 16962654
    162457 4v4i:h (3.71) BS02 rna ? GO:0000028 ... P17291 16962654
    162458 4v4i:h (3.71) BS03 rna ? GO:0000028 ... P17291 16962654
    162459 4v4i:i (3.71) BS01 rna ? GO:0003735 ... P0DOY9 16962654
    162460 4v4i:j (3.71) BS01 rna ? GO:0000049 ... P80374 16962654
    162461 4v4i:k (3.71) BS01 rna ? GO:0000049 ... Q5SHN7 16962654
    162462 4v4i:l (3.71) BS01 rna ? GO:0003735 ... P80376 16962654
    162463 4v4i:m (3.71) BS01 rna ? GO:0000049 ... Q5SHN3 16962654
    162464 4v4i:n (3.71) BS01 rna ? GO:0000049 ... P80377 16962654
    162465 4v4i:n (3.71) BS02 rna ? GO:0000049 ... P80377 16962654
    162466 4v4i:o (3.71) BS01 rna ? GO:0003735 ... P0DOY6 16962654
    162467 4v4i:p (3.71) BS01 rna ? GO:0003735 ... Q5SJ76 16962654
    162468 4v4i:p (3.71) BS02 rna ? GO:0003735 ... Q5SJ76 16962654
    162469 4v4i:q (3.71) BS01 rna ? GO:0003735 ... Q5SJH3 16962654
    162470 4v4i:r (3.71) BS01 rna ? GO:0003735 ... P0DOY7 16962654
    162471 4v4i:s (3.71) BS01 rna ? GO:0003735 ... Q5SLQ0 16962654
    162472 4v4i:t (3.71) BS01 rna ? GO:0000028 ... Q5SHP2 16962654
    162473 4v4i:u (3.71) BS01 rna ? GO:0003723 ... P80380 16962654
    162474 4v4j:A (3.83) BS01 rna ? GO:0000049 ... Q5SLP7 17940016
    162475 4v4j:A (3.83) BS02 rna ? GO:0000049 ... Q5SLP7 17940016
    162476 4v4j:B (3.83) BS01 rna ? GO:0002181 ... P60405 17940016
    162477 4v4j:C (3.83) BS01 rna ? GO:0003735 ... Q5SHN8 17940016
    162478 4v4j:D (3.83) BS01 rna ? GO:0003735 ... Q5SHN9 17940016
    162479 4v4j:E (3.83) BS01 rna ? GO:0000049 ... Q5SHQ0 17940016
    162480 4v4j:E (3.83) BS02 rna ? GO:0000049 ... Q5SHQ0 17940016
    162481 4v4j:E (3.83) BS03 rna ? GO:0000049 ... Q5SHQ0 17940016
    162482 4v4j:F (3.83) BS01 rna ? GO:0002181 ... P0DOY8 17940016
    162483 4v4j:G (3.83) BS01 rna ? GO:0003735 ... Q5SLQ1 17940016
    162484 4v4j:H (3.83) BS01 rna ? GO:0003729 ... P60488 17940016
    162485 4v4j:I (3.83) BS01 rna ? GO:0003735 ... Q5SHP8 17940016
    162486 4v4j:I (3.83) BS02 rna ? GO:0003735 ... Q5SHP8 17940016
    162487 4v4j:J (3.83) BS01 rna ? GO:0003735 ... Q5SHQ7 17940016
    162488 4v4j:K (3.83) BS01 rna ? GO:0000049 ... P60489 17940016
    162489 4v4j:L (3.83) BS01 rna ? GO:0003735 ... Q9Z9H5 17940016
    162490 4v4j:M (3.83) BS01 rna ? GO:0003735 ... Q5SHQ4 17940016
    162491 4v4j:M (3.83) BS02 rna ? GO:0003735 ... Q5SHQ4 17940016
    162492 4v4j:N (3.83) BS01 rna ? GO:0003735 ... P60490 17940016
    162493 4v4j:N (3.83) BS02 rna ? GO:0003735 ... P60490 17940016
    162494 4v4j:O (3.83) BS01 rna ? GO:0000027 ... P60491 17940016
    162495 4v4j:P (3.83) BS01 rna ? GO:0003723 ... P60492 17940016
    162496 4v4j:Q (3.83) BS01 rna ? GO:0003735 ... Q5SHP3 17940016
    162497 4v4j:R (3.83) BS01 rna ? GO:0000027 ... Q5SHP0 17940016
    162498 4v4j:S (3.83) BS01 rna ? GO:0003723 ... Q5SHP9 17940016
    162499 4v4j:T (3.83) BS01 rna ? GO:0003723 ... Q5SHZ1 17940016
    162500 4v4j:T (3.83) BS02 rna ? GO:0003723 ... Q5SHZ1 17940016
    162501 4v4j:U (3.83) BS01 rna ? GO:0003735 ... P60493 17940016
    162502 4v4j:U (3.83) BS02 rna ? GO:0003735 ... P60493 17940016
    162503 4v4j:V (3.83) BS01 rna ? GO:0003735 ... P60494 17940016
    162504 4v4j:V (3.83) BS02 rna ? GO:0003735 ... P60494 17940016
    162505 4v4j:W (3.83) BS01 rna ? GO:0003735 ... Q5SHP6 17940016
    162506 4v4j:X (3.83) BS01 rna ? GO:0003735 ... Q5SHQ6 17940016
    162507 4v4j:Y (3.83) BS01 rna ? GO:0003735 ... P80339 17940016
    162508 4v4j:Z (3.83) BS01 rna ? GO:0003735 ... P80340 17940016
    162509 4v4j:a (3.83) BS01 rna ? GO:0003735 ... Q5SKU1 17940016
    162510 4v4j:b (3.83) BS01 rna ? GO:0003735 ... Q5SHR2 17940016
    162511 4v4j:c (3.83) BS01 rna ? GO:0003735 ... P80371 17940016
    162512 4v4j:d (3.83) BS01 rna ? GO:0003676 ... P80372 17940016
    162513 4v4j:e (3.83) BS01 rna ? GO:0003723 ... P80373 17940016
    162514 4v4j:f (3.83) BS01 rna ? GO:0003723 ... Q5SHQ5 17940016
    162515 4v4j:g (3.83) BS01 rna ? GO:0003735 ... Q5SLP8 17940016
    162516 4v4j:h (3.83) BS01 rna ? GO:0000028 ... P17291 17940016
    162517 4v4j:h (3.83) BS02 rna ? GO:0000028 ... P17291 17940016
    162518 4v4j:i (3.83) BS01 rna ? GO:0003735 ... P0DOY9 17940016
    162519 4v4j:j (3.83) BS01 rna ? GO:0000049 ... P80374 17940016
    162520 4v4j:k (3.83) BS01 rna ? GO:0000049 ... Q5SHN7 17940016
    162521 4v4j:l (3.83) BS01 rna ? GO:0003735 ... P80376 17940016
    162522 4v4j:m (3.83) BS01 rna ? GO:0000049 ... Q5SHN3 17940016
    162523 4v4j:n (3.83) BS01 rna ? GO:0000049 ... P80377 17940016
    162524 4v4j:n (3.83) BS02 rna ? GO:0000049 ... P80377 17940016
    162525 4v4j:n (3.83) BS03 peptide ? GO:0000049 ... P80377 17940016
    162526 4v4j:o (3.83) BS01 rna ? GO:0003735 ... P0DOY6 17940016
    162527 4v4j:p (3.83) BS01 rna ? GO:0003735 ... Q5SJ76 17940016
    162528 4v4j:p (3.83) BS02 rna ? GO:0003735 ... Q5SJ76 17940016
    162529 4v4j:q (3.83) BS01 rna ? GO:0003735 ... Q5SJH3 17940016
    162530 4v4j:r (3.83) BS01 rna ? GO:0003735 ... P0DOY7 17940016
    162531 4v4j:s (3.83) BS01 rna ? GO:0003735 ... Q5SLQ0 17940016
    162532 4v4j:t (3.83) BS01 rna ? GO:0000028 ... Q5SHP2 17940016
    162533 4v4j:u (3.83) BS01 rna ? GO:0003723 ... P80380 17940016
    162534 4v4m:0 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162535 4v4m:1 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162536 4v4m:2 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162537 4v4m:3 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162538 4v4m:4 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162539 4v4m:5 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162540 4v4m:6 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162541 4v4m:7 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162542 4v4m:A (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162543 4v4m:B (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162544 4v4m:C (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162545 4v4m:D (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162546 4v4m:E (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162547 4v4m:F (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162548 4v4m:G (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162549 4v4m:H (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162550 4v4m:I (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162551 4v4m:J (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162552 4v4m:K (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162553 4v4m:L (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162554 4v4m:M (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162555 4v4m:N (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162556 4v4m:O (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162557 4v4m:P (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162558 4v4m:Q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162559 4v4m:R (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162560 4v4m:S (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162561 4v4m:T (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162562 4v4m:U (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162563 4v4m:V (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162564 4v4m:W (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162565 4v4m:X (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162566 4v4m:Y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162567 4v4m:Z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162568 4v4m:a (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162569 4v4m:b (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162570 4v4m:c (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162571 4v4m:d (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162572 4v4m:e (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162573 4v4m:f (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162574 4v4m:g (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162575 4v4m:h (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162576 4v4m:i (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162577 4v4m:j (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162578 4v4m:k (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162579 4v4m:l (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162580 4v4m:m (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162581 4v4m:n (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162582 4v4m:o (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162583 4v4m:p (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162584 4v4m:q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162585 4v4m:r (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162586 4v4m:s (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162587 4v4m:t (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162588 4v4m:u (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162589 4v4m:v (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162590 4v4m:w (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162591 4v4m:x (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162592 4v4m:y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162593 4v4m:z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    162594 4v4n:A5 (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162595 4v4n:AA (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162596 4v4n:AB (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    162597 4v4n:AC (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162598 4v4n:AD (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162599 4v4n:AE (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    162600 4v4n:AE (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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