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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162201 4v4g:GT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162202 4v4g:GT (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    162203 4v4g:H1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162204 4v4g:H2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162205 4v4g:H3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162206 4v4g:H4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162207 4v4g:H5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162208 4v4g:H6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162209 4v4g:H7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162210 4v4g:HD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162211 4v4g:HD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    162212 4v4g:HE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162213 4v4g:HF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162214 4v4g:HG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162215 4v4g:HG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162216 4v4g:HG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    162217 4v4g:HH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162218 4v4g:HI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162219 4v4g:HJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162220 4v4g:HK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162221 4v4g:HL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162222 4v4g:HL (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162223 4v4g:HM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162224 4v4g:HN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162225 4v4g:HN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162226 4v4g:HO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162227 4v4g:HP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162228 4v4g:HP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162229 4v4g:HQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162230 4v4g:HQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162231 4v4g:HR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162232 4v4g:HS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162233 4v4g:HT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162234 4v4g:HU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162235 4v4g:HV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162236 4v4g:HW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162237 4v4g:HW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162238 4v4g:HX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162239 4v4g:HY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162240 4v4g:HZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162241 4v4g:IB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162242 4v4g:ID (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162243 4v4g:IE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162244 4v4g:IF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162245 4v4g:IG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162246 4v4g:IH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162247 4v4g:II (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162248 4v4g:IJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162249 4v4g:IK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162250 4v4g:IL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162251 4v4g:IM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    162252 4v4g:IN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162253 4v4g:IO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162254 4v4g:IO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162255 4v4g:IP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162256 4v4g:IQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162257 4v4g:IR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162258 4v4g:IS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162259 4v4g:IT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162260 4v4g:J1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162261 4v4g:J2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162262 4v4g:J3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162263 4v4g:J4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162264 4v4g:J5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162265 4v4g:J6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162266 4v4g:J7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162267 4v4g:JD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162268 4v4g:JE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162269 4v4g:JF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162270 4v4g:JG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162271 4v4g:JG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162272 4v4g:JG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    162273 4v4g:JH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162274 4v4g:JI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162275 4v4g:JJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162276 4v4g:JK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162277 4v4g:JL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162278 4v4g:JM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162279 4v4g:JN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162280 4v4g:JN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162281 4v4g:JO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162282 4v4g:JP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162283 4v4g:JP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162284 4v4g:JQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162285 4v4g:JQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162286 4v4g:JR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162287 4v4g:JS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162288 4v4g:JT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162289 4v4g:JU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162290 4v4g:JV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    162291 4v4g:JW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162292 4v4g:JW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162293 4v4g:JX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162294 4v4g:JX (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    162295 4v4g:JY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162296 4v4g:JZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162297 4v4h:AB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16998486
    162298 4v4h:AC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16998486
    162299 4v4h:AD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16998486
    162300 4v4h:AE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16998486
    162301 4v4h:AF (3.46) BS01 rna ? GO:0002181 ... P02358 16998486
    162302 4v4h:AG (3.46) BS01 rna ? GO:0000028 ... P02359 16998486
    162303 4v4h:AH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16998486
    162304 4v4h:AI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16998486
    162305 4v4h:AJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16998486
    162306 4v4h:AK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16998486
    162307 4v4h:AK (3.46) BS02 rna ? GO:0002181 ... P0A7R9 16998486
    162308 4v4h:AL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16998486
    162309 4v4h:AM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16998486
    162310 4v4h:AN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16998486
    162311 4v4h:AO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16998486
    162312 4v4h:AO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16998486
    162313 4v4h:AP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16998486
    162314 4v4h:AQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16998486
    162315 4v4h:AR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16998486
    162316 4v4h:AS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16998486
    162317 4v4h:AT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16998486
    162318 4v4h:AU (3.46) BS01 rna ? GO:0000028 ... P68679 16998486
    162319 4v4h:B0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16998486
    162320 4v4h:B1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16998486
    162321 4v4h:B2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16998486
    162322 4v4h:B3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16998486
    162323 4v4h:B4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16998486
    162324 4v4h:BC (3.46) BS01 rna ? GO:0000027 ... P60422 16998486
    162325 4v4h:BD (3.46) BS01 rna ? GO:0000027 ... P60438 16998486
    162326 4v4h:BE (3.46) BS01 rna ? GO:0001070 ... P60723 16998486
    162327 4v4h:BF (3.46) BS01 rna ? GO:0000027 ... P62399 16998486
    162328 4v4h:BF (3.46) BS02 rna ? GO:0000027 ... P62399 16998486
    162329 4v4h:BG (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    162330 4v4h:BH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16998486
    162331 4v4h:BH (3.46) BS02 rna ? GO:0002181 ... P0A7R1 16998486
    162332 4v4h:BI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16998486
    162333 4v4h:BJ (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    162334 4v4h:BK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16998486
    162335 4v4h:BK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16998486
    162336 4v4h:BL (3.46) BS01 rna ? GO:0002181 ... P02413 16998486
    162337 4v4h:BM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16998486
    162338 4v4h:BN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16998486
    162339 4v4h:BO (3.46) BS01 rna ? GO:0002181 ... P0C018 16998486
    162340 4v4h:BO (3.46) BS02 rna ? GO:0002181 ... P0C018 16998486
    162341 4v4h:BP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16998486
    162342 4v4h:BP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16998486
    162343 4v4h:BQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16998486
    162344 4v4h:BR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16998486
    162345 4v4h:BS (3.46) BS01 rna ? GO:0002181 ... P61175 16998486
    162346 4v4h:BT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16998486
    162347 4v4h:BU (3.46) BS01 rna ? GO:0000027 ... P60624 16998486
    162348 4v4h:BV (3.46) BS01 rna ? GO:0000027 ... P68919 16998486
    162349 4v4h:BV (3.46) BS02 rna ? GO:0000027 ... P68919 16998486
    162350 4v4h:BW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16998486
    162351 4v4h:BW (3.46) BS02 rna ? GO:0000027 ... P0A7L8 16998486
    162352 4v4h:BX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16998486
    162353 4v4h:BY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16998486
    162354 4v4h:BY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16998486
    162355 4v4h:BZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16998486
    162356 4v4h:CB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16998486
    162357 4v4h:CC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16998486
    162358 4v4h:CD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16998486
    162359 4v4h:CE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16998486
    162360 4v4h:CF (3.46) BS01 rna ? GO:0002181 ... P02358 16998486
    162361 4v4h:CG (3.46) BS01 rna ? GO:0000028 ... P02359 16998486
    162362 4v4h:CH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16998486
    162363 4v4h:CI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16998486
    162364 4v4h:CJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16998486
    162365 4v4h:CJ (3.46) BS02 rna ? GO:0000049 ... P0A7R5 16998486
    162366 4v4h:CK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16998486
    162367 4v4h:CL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16998486
    162368 4v4h:CM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16998486
    162369 4v4h:CN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16998486
    162370 4v4h:CO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16998486
    162371 4v4h:CO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16998486
    162372 4v4h:CP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16998486
    162373 4v4h:CQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16998486
    162374 4v4h:CR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16998486
    162375 4v4h:CS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16998486
    162376 4v4h:CT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16998486
    162377 4v4h:CU (3.46) BS01 rna ? GO:0000028 ... P68679 16998486
    162378 4v4h:D0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16998486
    162379 4v4h:D1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16998486
    162380 4v4h:D2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16998486
    162381 4v4h:D3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16998486
    162382 4v4h:D4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16998486
    162383 4v4h:DC (3.46) BS01 rna ? GO:0000027 ... P60422 16998486
    162384 4v4h:DD (3.46) BS01 rna ? GO:0000027 ... P60438 16998486
    162385 4v4h:DE (3.46) BS01 rna ? GO:0001070 ... P60723 16998486
    162386 4v4h:DF (3.46) BS01 rna ? GO:0000027 ... P62399 16998486
    162387 4v4h:DF (3.46) BS02 rna ? GO:0000027 ... P62399 16998486
    162388 4v4h:DG (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    162389 4v4h:DH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16998486
    162390 4v4h:DI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16998486
    162391 4v4h:DJ (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    162392 4v4h:DK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16998486
    162393 4v4h:DK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16998486
    162394 4v4h:DL (3.46) BS01 rna ? GO:0002181 ... P02413 16998486
    162395 4v4h:DM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16998486
    162396 4v4h:DN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16998486
    162397 4v4h:DO (3.46) BS01 rna ? GO:0002181 ... P0C018 16998486
    162398 4v4h:DO (3.46) BS02 rna ? GO:0002181 ... P0C018 16998486
    162399 4v4h:DP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16998486
    162400 4v4h:DP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16998486
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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