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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    161601 4v41:O (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161602 4v41:O (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161603 4v41:P (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161604 4v41:P (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161605 4v42:AJ (5.5) BS01 rna ? GO:0000028 ... P17291 11283358
    161606 4v42:BX (5.5) BS01 rna ? GO:0003735 ... Q5SHQ6 11283358
    161607 4v44:A (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161608 4v44:A (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161609 4v44:A (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161610 4v44:B (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161611 4v44:B (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161612 4v44:B (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161613 4v44:C (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161614 4v44:C (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161615 4v44:C (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161616 4v44:D (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161617 4v44:D (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161618 4v44:D (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161619 4v44:E (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161620 4v44:E (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161621 4v44:E (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161622 4v44:F (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161623 4v44:F (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161624 4v44:F (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161625 4v44:G (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161626 4v44:G (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161627 4v44:G (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161628 4v44:H (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161629 4v44:H (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161630 4v44:H (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161631 4v44:I (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161632 4v44:I (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161633 4v44:I (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161634 4v44:J (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161635 4v44:J (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161636 4v44:J (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161637 4v44:K (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161638 4v44:K (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161639 4v44:K (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161640 4v44:L (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161641 4v44:L (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161642 4v44:L (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161643 4v44:M (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161644 4v44:M (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161645 4v44:M (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161646 4v44:N (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161647 4v44:N (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161648 4v44:N (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161649 4v44:O (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161650 4v44:O (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161651 4v44:O (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161652 4v44:P (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161653 4v44:P (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161654 4v44:P (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161655 4v45:A (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161656 4v45:A (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161657 4v45:A (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161658 4v45:B (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161659 4v45:B (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161660 4v45:B (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161661 4v45:C (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161662 4v45:C (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161663 4v45:C (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161664 4v45:D (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161665 4v45:D (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161666 4v45:D (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161667 4v45:E (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161668 4v45:E (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161669 4v45:E (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161670 4v45:F (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161671 4v45:F (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161672 4v45:F (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161673 4v45:G (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161674 4v45:G (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161675 4v45:G (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161676 4v45:H (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161677 4v45:H (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161678 4v45:H (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161679 4v45:I (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161680 4v45:I (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161681 4v45:I (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161682 4v45:J (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161683 4v45:J (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161684 4v45:J (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161685 4v45:K (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161686 4v45:K (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161687 4v45:K (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161688 4v45:L (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161689 4v45:L (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161690 4v45:L (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161691 4v45:M (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161692 4v45:M (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161693 4v45:M (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161694 4v45:N (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161695 4v45:N (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161696 4v45:N (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161697 4v45:O (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161698 4v45:O (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161699 4v45:O (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161700 4v45:P (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    161701 4v45:P (2.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161702 4v45:P (2.6) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    161703 4v46:A0 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161704 4v46:A1 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161705 4v46:A2 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161706 4v46:A3 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161707 4v46:A4 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161708 4v46:A5 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161709 4v46:A6 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161710 4v46:A7 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161711 4v46:A8 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161712 4v46:A9 (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161713 4v46:AA (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161714 4v46:AB (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161715 4v46:AC (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161716 4v46:AD (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161717 4v46:AE (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161718 4v46:AF (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161719 4v46:AG (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161720 4v46:AH (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161721 4v46:AI (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161722 4v46:AJ (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161723 4v46:AK (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161724 4v46:AL (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161725 4v46:AM (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161726 4v46:AN (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161727 4v46:AO (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161728 4v46:AP (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161729 4v46:AQ (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161730 4v46:AR (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161731 4v46:AS (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161732 4v46:AT (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161733 4v46:AU (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161734 4v46:AV (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161735 4v46:AW (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161736 4v46:AX (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161737 4v46:AY (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161738 4v46:AZ (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161739 4v46:Aa (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161740 4v46:Ab (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161741 4v46:Ac (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161742 4v46:Ad (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161743 4v46:Ae (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161744 4v46:Af (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161745 4v46:Ag (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161746 4v46:Ah (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161747 4v46:Ai (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161748 4v46:Aj (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161749 4v46:Ak (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161750 4v46:Al (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161751 4v46:Am (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161752 4v46:An (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161753 4v46:Ao (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161754 4v46:Ap (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161755 4v46:Aq (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161756 4v46:Ar (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161757 4v46:As (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161758 4v46:At (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161759 4v46:Au (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161760 4v46:Av (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161761 4v46:Aw (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161762 4v46:Ax (3.3) BS01 peptide ? GO:0005164 ... Q9Y275 12715002
    161763 4v49:AB (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161764 4v49:AD (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161765 4v49:AE (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161766 4v49:AF (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161767 4v49:AG (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161768 4v49:AH (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161769 4v49:AI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161770 4v49:AJ (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161771 4v49:AK (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161772 4v49:AL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161773 4v49:AM (8.7) BS01 rna N/A GO:0003676 ... N/A 12853578
    161774 4v49:AM (8.7) BS02 rna N/A GO:0003676 ... N/A 12853578
    161775 4v49:AM (8.7) BS03 rna N/A GO:0003676 ... N/A 12853578
    161776 4v49:AN (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161777 4v49:AO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161778 4v49:AP (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161779 4v49:AQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161780 4v49:AQ (8.7) BS02 rna N/A GO:0003735 ... N/A 12853578
    161781 4v49:AR (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161782 4v49:AS (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161783 4v49:AT (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161784 4v49:B1 (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161785 4v49:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161786 4v49:BA (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    161787 4v49:BB (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161788 4v49:BC (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161789 4v49:BD (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161790 4v49:BG (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161791 4v49:BI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161792 4v49:BJ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161793 4v49:BL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161794 4v49:BO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161795 4v49:BQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161796 4v49:BX (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161797 4v49:BZ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    161798 4v4a:AB (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    161799 4v4a:AD (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    161800 4v4a:AE (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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