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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    161401 4v1o:C (9.7) BS01 ZN ? GO:0000428 ... P16370 25652824
    161402 4v1o:I (9.7) BS01 ZN ? GO:0000428 ... P27999 25652824
    161403 4v1o:I (9.7) BS02 ZN ? GO:0000428 ... P27999 25652824
    161404 4v1o:J (9.7) BS01 ZN ? GO:0000428 ... P22139 25652824
    161405 4v1o:L (9.7) BS01 ZN ? GO:0000428 ... P40422 25652824
    161406 4v1o:M (9.7) BS01 dna ? GO:0000993 ... P29055 25652824
    161407 4v1o:M (9.7) BS02 dna ? GO:0000993 ... P29055 25652824
    161408 4v1o:M (9.7) BS03 ZN ? GO:0000993 ... P29055 25652824
    161409 4v1x:A (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161410 4v1x:B (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161411 4v1x:C (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161412 4v1x:D (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161413 4v1x:E (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161414 4v1x:F (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161415 4v1y:A (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161416 4v1y:B (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161417 4v1y:C (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161418 4v1y:D (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161419 4v1y:E (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161420 4v1y:F (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161421 4v1y:G (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161422 4v1y:H (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161423 4v1y:I (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161424 4v1y:J (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161425 4v1y:K (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161426 4v1y:L (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    161427 4v24:A (1.8) BS01 GYR 2.3.1.-
    2.7.1.91    		 GO:0000287 ... Q9NYA1 25516793 MOAD: Ki=4.3nM
    PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    BindingDB: Ki=3.6nM, IC50=28nM, Kd=5.0nM
    161428 4v24:B (1.8) BS01 GYR 2.3.1.-
    2.7.1.91    		 GO:0000287 ... Q9NYA1 25516793 MOAD: Ki=4.3nM
    BindingDB: Ki=3.6nM, IC50=28nM, Kd=5.0nM
    161429 4v25:A (2.6) BS01 TF3 2.7.11.2 GO:0004672 ... Q15119 25404640 BindingDB: IC50=2000nM
    161430 4v25:A (2.6) BS02 SZ6 2.7.11.2 GO:0004672 ... Q15119 25404640 PDBbind: -logKd/Ki=7.08, IC50=84nM
    BindingDB: IC50=80nM
    161431 4v26:A (2.49) BS01 TF3 2.7.11.2 GO:0004672 ... Q15119 25404640 BindingDB: IC50=2000nM
    161432 4v26:A (2.49) BS02 7TJ 2.7.11.2 GO:0004672 ... Q15119 25404640
    161433 4v27:A (1.9) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964 PDBbind: -logKd/Ki=6.66, Kd=217nM
    161434 4v27:A (1.9) BS02 IFM 3.2.1.130 GO:0004559 ... D6D1V7 25487964 PDBbind: -logKd/Ki=6.66, Kd=217nM
    161435 4v28:A (1.2) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    161436 4v28:A (1.2) BS02 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    161437 4v28:A (1.2) BS03 4MU 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    161438 4v29:A (1.6) BS01 CA ? GO:0005096 ... Q9LVH4 25465408
    161439 4v29:A (1.6) BS02 CA ? GO:0005096 ... Q9LVH4 25465408
    161440 4v29:B (1.6) BS01 CA ? GO:0005096 ... Q9LVH4 25465408
    161441 4v29:B (1.6) BS02 CA ? GO:0005096 ... Q9LVH4 25465408
    161442 4v2k:A (1.29) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    161443 4v2k:A (1.29) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    161444 4v2k:A (1.29) BS03 THJ 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    161445 4v2o:B (2.13) BS01 CLQ ? GO:0005764 ... P07602 26616259 MOAD: Ka=31400M^-1
    161446 4v2o:C (2.13) BS01 CLQ ? GO:0005764 ... P07602 26616259 MOAD: Ka=31400M^-1
    161447 4v2s:A (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161448 4v2s:B (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161449 4v2s:C (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161450 4v2s:D (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161451 4v2s:E (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161452 4v2s:F (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    161453 4v3i:A (1.499) BS01 peptide ? GO:0003674 ... Q9KN50 25471186
    161454 4v3p:LA (34.0) BS01 rna ? GO:0003723 ... Q5I7L3 25376914
    161455 4v3p:LB (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161456 4v3p:LB (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    161457 4v3p:LB (34.0) BS03 peptide N/A GO:0003723 ... N/A 25376914
    161458 4v3p:LC (34.0) BS01 rna ? GO:0003723 ... Q7X744 25376914
    161459 4v3p:LD (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161460 4v3p:LD (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161461 4v3p:LE (34.0) BS01 rna ? GO:0003723 ... Q5I7L2 25376914
    161462 4v3p:LE (34.0) BS02 rna ? GO:0003723 ... Q5I7L2 25376914
    161463 4v3p:LF (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161464 4v3p:LG (34.0) BS01 rna ? GO:0003735 ... Q5I7L4 25376914
    161465 4v3p:LH (34.0) BS01 rna N/A GO:0042254 ... N/A 25376914
    161466 4v3p:LH (34.0) BS02 rna N/A GO:0042254 ... N/A 25376914
    161467 4v3p:LH (34.0) BS03 peptide N/A GO:0042254 ... N/A 25376914
    161468 4v3p:LI (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161469 4v3p:LI (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161470 4v3p:LJ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161471 4v3p:LK (34.0) BS01 rna ? GO:0003729 ... Q5I7L1 25376914
    161472 4v3p:LM (34.0) BS01 rna ? GO:0003735 ... Q5I7K4 25376914
    161473 4v3p:LN (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161474 4v3p:LO (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161475 4v3p:LP (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161476 4v3p:LP (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161477 4v3p:LQ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161478 4v3p:LQ (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161479 4v3p:LR (34.0) BS01 rna ? GO:0003735 ... Q5I7L0 25376914
    161480 4v3p:LS (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161481 4v3p:LS (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161482 4v3p:LT (34.0) BS01 rna ? GO:0003723 ... Q7XY20 25376914
    161483 4v3p:LT (34.0) BS02 rna ? GO:0003723 ... Q7XY20 25376914
    161484 4v3p:LU (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161485 4v3p:LU (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161486 4v3p:LU (34.0) BS03 peptide N/A GO:0003735 ... N/A 25376914
    161487 4v3p:LV (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161488 4v3p:LV (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161489 4v3p:LW (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161490 4v3p:LX (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161491 4v3p:LX (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161492 4v3p:LY (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161493 4v3p:LY (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    161494 4v3p:La (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161495 4v3p:Lb (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161496 4v3p:Lc (34.0) BS01 rna ? GO:0000463 ... Q8L805 25376914
    161497 4v3p:Lc (34.0) BS02 rna ? GO:0000463 ... Q8L805 25376914
    161498 4v3p:Le (34.0) BS01 rna ? GO:0000463 ... Q5I7K6 25376914
    161499 4v3p:Lf (34.0) BS01 rna ? GO:0003723 ... Q5I7K9 25376914
    161500 4v3p:Lf (34.0) BS02 rna ? GO:0003723 ... Q5I7K9 25376914
    161501 4v3p:Lg (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161502 4v3p:Lh (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161503 4v3p:Li (34.0) BS01 rna ? GO:0003735 ... Q5I7K8 25376914
    161504 4v3p:Lj (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161505 4v3p:Lk (34.0) BS01 rna ? GO:0003735 ... Q5I7L5 25376914
    161506 4v3p:Ll (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161507 4v3p:Ll (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161508 4v3p:Lm (34.0) BS01 rna ? GO:0003735 ... D8L9P6 25376914
    161509 4v3p:Lm (34.0) BS02 rna ? GO:0003735 ... D8L9P6 25376914
    161510 4v3p:Ln (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161511 4v3p:Lo (34.0) BS01 rna ? GO:0003735 ... Q5I7K7 25376914
    161512 4v3p:Lo (34.0) BS02 rna ? GO:0003735 ... Q5I7K7 25376914
    161513 4v3p:Lp (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161514 4v3p:Lr (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161515 4v3p:SA (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161516 4v3p:SB (34.0) BS01 rna ? GO:0003723 ... Q8L804 25376914
    161517 4v3p:SC (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161518 4v3p:SC (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    161519 4v3p:SD (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161520 4v3p:SE (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161521 4v3p:SF (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161522 4v3p:SH (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161523 4v3p:SI (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161524 4v3p:SJ (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161525 4v3p:SK (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161526 4v3p:SL (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161527 4v3p:SM (34.0) BS01 rna N/A GO:0003676 ... N/A 25376914
    161528 4v3p:SM (34.0) BS02 rna N/A GO:0003676 ... N/A 25376914
    161529 4v3p:SN (34.0) BS01 rna ? GO:0003735 ... Q5I7K3 25376914
    161530 4v3p:SO (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161531 4v3p:SO (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161532 4v3p:SP (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161533 4v3p:SP (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161534 4v3p:SQ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161535 4v3p:SR (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    161536 4v3p:SS (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161537 4v3p:ST (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161538 4v3p:ST (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    161539 4v3p:SU (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161540 4v3p:SX (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161541 4v3p:SZ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    161542 4v40:A (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161543 4v40:A (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161544 4v40:B (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161545 4v40:B (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161546 4v40:C (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161547 4v40:C (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161548 4v40:D (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161549 4v40:D (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161550 4v40:E (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161551 4v40:E (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161552 4v40:F (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161553 4v40:F (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161554 4v40:G (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161555 4v40:G (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161556 4v40:H (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161557 4v40:H (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161558 4v40:I (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161559 4v40:I (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161560 4v40:J (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161561 4v40:J (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161562 4v40:K (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161563 4v40:K (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161564 4v40:L (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161565 4v40:L (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161566 4v40:M (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161567 4v40:N (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161568 4v40:N (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161569 4v40:O (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161570 4v40:O (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161571 4v40:P (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161572 4v40:P (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 8008071
    161573 4v41:A (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161574 4v41:A (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161575 4v41:B (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161576 4v41:B (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161577 4v41:C (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161578 4v41:C (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161579 4v41:D (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161580 4v41:D (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161581 4v41:E (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161582 4v41:E (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161583 4v41:F (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161584 4v41:F (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161585 4v41:G (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161586 4v41:G (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161587 4v41:H (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161588 4v41:H (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161589 4v41:I (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161590 4v41:I (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161591 4v41:J (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161592 4v41:J (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161593 4v41:K (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161594 4v41:K (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161595 4v41:L (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161596 4v41:L (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161597 4v41:M (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161598 4v41:M (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161599 4v41:N (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    161600 4v41:N (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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