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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160401 4ujc:Cc (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160402 4ujc:Cc (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160403 4ujc:Cd (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160404 4ujc:Ce (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160405 4ujc:Cf (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160406 4ujd:AA (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160407 4ujd:AB (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160408 4ujd:AC (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160409 4ujd:AC (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160410 4ujd:AD (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160411 4ujd:AD (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160412 4ujd:AE (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160413 4ujd:AG (8.9) BS01 rna N/A GO:0042254 ... N/A 25064512
    160414 4ujd:AG (8.9) BS02 rna N/A GO:0042254 ... N/A 25064512
    160415 4ujd:AH (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160416 4ujd:AI (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160417 4ujd:AI (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160418 4ujd:AJ (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160419 4ujd:AJ (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160420 4ujd:AJ (8.9) BS03 rna N/A GO:0003735 ... N/A 25064512
    160421 4ujd:AL (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160422 4ujd:AL (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160423 4ujd:AM (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160424 4ujd:AN (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160425 4ujd:AN (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160426 4ujd:AO (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160427 4ujd:AP (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160428 4ujd:AP (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160429 4ujd:AQ (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160430 4ujd:AR (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160431 4ujd:AS (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160432 4ujd:AS (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160433 4ujd:AT (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160434 4ujd:AT (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160435 4ujd:AU (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160436 4ujd:AV (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160437 4ujd:AV (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160438 4ujd:AX (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160439 4ujd:AX (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160440 4ujd:AY (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160441 4ujd:AY (8.9) BS02 rna N/A GO:0003723 ... N/A 25064512
    160442 4ujd:AZ (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160443 4ujd:Aa (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160444 4ujd:Ab (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160445 4ujd:Ac (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160446 4ujd:Ad (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160447 4ujd:Ae (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160448 4ujd:Af (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160449 4ujd:Ag (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160450 4ujd:Ah (8.9) BS01 rna N/A GO:0000463 ... N/A 25064512
    160451 4ujd:Ah (8.9) BS02 rna N/A GO:0000463 ... N/A 25064512
    160452 4ujd:Ai (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160453 4ujd:Aj (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160454 4ujd:Aj (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160455 4ujd:Ak (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160456 4ujd:Al (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160457 4ujd:Al (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160458 4ujd:Am (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160459 4ujd:Ao (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160460 4ujd:Ao (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160461 4ujd:Ap (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160462 4ujd:At (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160463 4ujd:Au (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160464 4ujd:CA (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160465 4ujd:CB (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160466 4ujd:CB (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160467 4ujd:CB (8.9) BS03 rna N/A GO:0003735 ... N/A 25064512
    160468 4ujd:CC (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160469 4ujd:CC (8.9) BS02 rna N/A GO:0003723 ... N/A 25064512
    160470 4ujd:CD (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160471 4ujd:CD (8.9) BS02 rna N/A GO:0003723 ... N/A 25064512
    160472 4ujd:CE (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160473 4ujd:CF (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160474 4ujd:CF (8.9) BS02 rna N/A GO:0003723 ... N/A 25064512
    160475 4ujd:CG (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160476 4ujd:CH (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160477 4ujd:CI (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160478 4ujd:CI (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160479 4ujd:CJ (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160480 4ujd:CL (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160481 4ujd:CM (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160482 4ujd:CN (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160483 4ujd:CN (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160484 4ujd:CO (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160485 4ujd:CO (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160486 4ujd:CP (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160487 4ujd:CQ (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160488 4ujd:CQ (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160489 4ujd:CR (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160490 4ujd:CS (8.9) BS01 rna N/A GO:0003676 ... N/A 25064512
    160491 4ujd:CT (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160492 4ujd:CU (8.9) BS01 rna N/A GO:0003723 ... N/A 25064512
    160493 4ujd:CW (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160494 4ujd:CX (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160495 4ujd:CY (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160496 4ujd:Ca (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160497 4ujd:Cb (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160498 4ujd:Cb (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160499 4ujd:Cc (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160500 4ujd:Cc (8.9) BS02 rna N/A GO:0003735 ... N/A 25064512
    160501 4ujd:Cd (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160502 4ujd:Ce (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160503 4ujd:Cf (8.9) BS01 rna N/A GO:0003735 ... N/A 25064512
    160504 4uje:BA (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160505 4uje:BB (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160506 4uje:BC (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160507 4uje:BC (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    160508 4uje:BD (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160509 4uje:BD (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    160510 4uje:BE (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160511 4uje:BF (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160512 4uje:BF (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    160513 4uje:BF (6.9) BS03 rna N/A GO:0003723 ... N/A 24995983
    160514 4uje:BG (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160515 4uje:BH (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160516 4uje:BI (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160517 4uje:BI (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160518 4uje:BJ (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160519 4uje:BL (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160520 4uje:BM (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160521 4uje:BN (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160522 4uje:BN (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160523 4uje:BO (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160524 4uje:BP (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160525 4uje:BQ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160526 4uje:BR (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160527 4uje:BS (6.9) BS01 rna N/A GO:0003676 ... N/A 24995983
    160528 4uje:BS (6.9) BS02 rna N/A GO:0003676 ... N/A 24995983
    160529 4uje:BT (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160530 4uje:BU (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160531 4uje:BW (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160532 4uje:BX (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160533 4uje:BY (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160534 4uje:Ba (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160535 4uje:Ba (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160536 4uje:Bb (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160537 4uje:Bc (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160538 4uje:Bd (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160539 4uje:Be (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160540 4uje:Bf (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160541 4uje:CA (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160542 4uje:CB (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160543 4uje:CC (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160544 4uje:CC (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160545 4uje:CD (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160546 4uje:CD (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160547 4uje:CE (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160548 4uje:CG (6.9) BS01 rna N/A GO:0042254 ... N/A 24995983
    160549 4uje:CG (6.9) BS02 rna N/A GO:0042254 ... N/A 24995983
    160550 4uje:CH (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160551 4uje:CI (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160552 4uje:CI (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160553 4uje:CJ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160554 4uje:CJ (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160555 4uje:CJ (6.9) BS03 rna N/A GO:0003735 ... N/A 24995983
    160556 4uje:CL (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160557 4uje:CL (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160558 4uje:CM (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160559 4uje:CN (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160560 4uje:CN (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160561 4uje:CO (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160562 4uje:CP (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160563 4uje:CP (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160564 4uje:CQ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160565 4uje:CR (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160566 4uje:CR (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    160567 4uje:CS (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160568 4uje:CS (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160569 4uje:CT (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160570 4uje:CT (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160571 4uje:CU (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160572 4uje:CV (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160573 4uje:CX (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160574 4uje:CX (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160575 4uje:CY (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160576 4uje:CY (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    160577 4uje:CZ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160578 4uje:Ca (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160579 4uje:Cb (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160580 4uje:Cc (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    160581 4uje:Cd (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160582 4uje:Ce (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160583 4uje:Cf (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160584 4uje:Cg (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160585 4uje:Ch (6.9) BS01 rna N/A GO:0000463 ... N/A 24995983
    160586 4uje:Ch (6.9) BS02 rna N/A GO:0000463 ... N/A 24995983
    160587 4uje:Ci (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160588 4uje:Cj (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160589 4uje:Cj (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160590 4uje:Ck (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160591 4uje:Cl (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160592 4uje:Cl (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160593 4uje:Cm (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160594 4uje:Co (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160595 4uje:Co (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160596 4uje:Co (6.9) BS03 rna N/A GO:0003735 ... N/A 24995983
    160597 4uje:Cp (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160598 4uje:Cp (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    160599 4uje:Ct (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    160600 4uje:Cu (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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