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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160201 4ug7:A (1.76) BS03 1EV 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.47e+3nM
    160202 4ug8:A (1.888) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160203 4ug8:A (1.888) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160204 4ug8:A (1.888) BS03 HW1 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.5e+2nM
    160205 4ug9:A (1.841) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160206 4ug9:A (1.841) BS02 1EW 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=8.61e+3nM
    160207 4uga:A (1.9) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160208 4uga:A (1.9) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160209 4uga:A (1.9) BS03 Q05 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.10e+4nM
    160210 4ugb:A (1.912) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160211 4ugb:A (1.912) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160212 4ugb:A (1.912) BS03 QJ7 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.37e+5nM
    160213 4ugc:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160214 4ugc:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160215 4ugc:A (1.801) BS03 1Q6 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.87e+4nM
    160216 4ugd:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160217 4ugd:A (2.03) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160218 4ugd:A (2.03) BS03 Q14 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=3.79e+4nM
    160219 4uge:A (2.14) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160220 4uge:A (2.14) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160221 4uge:A (2.14) BS03 Q15 1.14.14.47 GO:0004517 ... O34453 26062720
    160222 4ugf:A (1.81) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160223 4ugf:A (1.81) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160224 4ugf:A (1.81) BS03 Q16 1.14.14.47 GO:0004517 ... O34453 26062720
    160225 4ugf:A (1.81) BS04 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    160226 4ugg:A (2.356) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160227 4ugg:A (2.356) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160228 4ugg:A (2.356) BS03 S5D 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.56e+4nM
    160229 4ugh:A (1.994) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160230 4ugh:A (1.994) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160231 4ugh:A (1.994) BS03 4V4 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.046e+4nM
    160232 4ugi:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160233 4ugi:A (1.801) BS02 SKO 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.83e+4nM
    160234 4ugi:A (1.801) BS03 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    160235 4ugj:A (1.78) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160236 4ugj:A (1.78) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160237 4ugj:A (1.78) BS03 Q1T 1.14.14.47 GO:0004517 ... O34453 26062720
    160238 4ugk:A (1.62) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160239 4ugk:A (1.62) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160240 4ugk:A (1.62) BS03 7S9 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.23e+4nM
    160241 4ugl:A (1.82) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160242 4ugl:A (1.82) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160243 4ugl:A (1.82) BS03 S90 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.214e+4nM
    160244 4ugm:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160245 4ugm:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160246 4ugm:A (2.09) BS03 1QE 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=9.9e+4nM
    160247 4ugn:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160248 4ugn:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160249 4ugn:A (2.09) BS03 H49 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.78e+4nM
    160250 4ugo:A (2.38) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160251 4ugo:A (2.38) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160252 4ugo:A (2.38) BS03 1QF 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.23e+4nM
    160253 4ugp:A (1.8) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160254 4ugp:A (1.8) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160255 4ugp:A (1.8) BS03 I5U 1.14.14.47 GO:0004517 ... O34453 26062720
    160256 4ugq:A (1.85) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160257 4ugq:A (1.85) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160258 4ugq:A (1.85) BS03 7LN 1.14.14.47 GO:0004517 ... O34453 26062720
    160259 4ugr:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160260 4ugr:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160261 4ugr:A (2.09) BS03 6E5 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.10e+4nM
    160262 4ugs:A (1.99) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160263 4ugs:A (1.99) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160264 4ugs:A (1.99) BS03 H36 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.27e+5nM
    160265 4ugt:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160266 4ugt:A (2.03) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160267 4ugt:A (2.03) BS03 UGT 1.14.14.47 GO:0004517 ... O34453 26062720
    160268 4ugu:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160269 4ugu:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160270 4ugu:A (1.801) BS03 PQW 1.14.14.47 GO:0004517 ... O34453 26062720
    160271 4ugv:A (1.985) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160272 4ugv:A (1.985) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160273 4ugv:A (1.985) BS03 ARG 1.14.14.47 GO:0004517 ... O34453 26062720
    160274 4ugw:A (1.901) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160275 4ugw:A (1.901) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160276 4ugw:A (1.901) BS03 HW1 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.5e+2nM
    160277 4ugx:A (1.86) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160278 4ugx:A (1.86) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160279 4ugx:A (1.86) BS03 5H4 1.14.14.47 GO:0004517 ... O34453 26062720
    160280 4ugy:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160281 4ugy:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160282 4ugy:A (1.801) BS03 EXI 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.76e+4nM
    160283 4uhr:A (2.6) BS01 NGI ? GO:0001609 ... P29274 25762024 BindingDB: Ki=27nM, Kd=36nM, IC50=19nM, EC50=19953nM
    160284 4uhw:A (2.6) BS01 FES 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160285 4uhw:A (2.6) BS02 FES 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160286 4uhw:A (2.6) BS03 FAD 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160287 4uhx:A (2.7) BS01 FES 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160288 4uhx:A (2.7) BS02 FES 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160289 4uhx:A (2.7) BS03 FAD 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160290 4uhx:A (2.7) BS04 LZU 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160291 4uhx:A (2.7) BS05 RTZ 1.17.3.-
    1.2.3.1    		 GO:0004031 ... Q06278 26322824
    160292 4ui9:A (3.6) BS01 peptide ? GO:0005634 ... Q9H1A4 26083744
    160293 4ui9:A (3.6) BS02 peptide ? GO:0005634 ... Q9H1A4 26083744
    160294 4ui9:B (3.6) BS01 ZN ? GO:0000278 ... Q9NYG5 26083744
    160295 4ui9:B (3.6) BS02 ZN ? GO:0000278 ... Q9NYG5 26083744
    160296 4ui9:B (3.6) BS03 ZN ? GO:0000278 ... Q9NYG5 26083744
    160297 4ui9:J (3.6) BS01 peptide ? GO:0005515 ... Q13042 26083744
    160298 4ui9:K (3.6) BS01 peptide ? GO:0005515 ... Q13042 26083744
    160299 4ui9:O (3.6) BS01 peptide ? GO:0005680 ... Q9UJX4 26083744
    160300 4uj1:A (1.768) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 26578105
    160301 4uj1:A (1.768) BS02 NVX 2.7.11.11 GO:0000287 ... P17612 26578105 PDBbind: -logKd/Ki=6.52, Ki=300nM
    160302 4uj2:A (2.019) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 26578105
    160303 4uj2:A (2.019) BS02 NVV 2.7.11.11 GO:0000287 ... P17612 26578105 PDBbind: -logKd/Ki=7.10, Ki=80nM
    160304 4uj9:A (1.87) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 26578105
    160305 4uj9:A (1.87) BS02 S3N 2.7.11.11 GO:0000287 ... P17612 26578105 PDBbind: -logKd/Ki=8.70, Ki=2nM
    160306 4uja:A (1.93) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 26578105
    160307 4uja:A (1.93) BS02 4L7 2.7.11.11 GO:0000287 ... P17612 26578105 PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    160308 4ujb:A (1.949) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 26578105
    160309 4ujb:A (1.949) BS02 8BQ 2.7.11.11 GO:0000287 ... P17612 26578105 PDBbind: -logKd/Ki=8.00, Ki=10nM
    160310 4ujc:BA (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160311 4ujc:BB (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160312 4ujc:BC (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160313 4ujc:BC (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160314 4ujc:BD (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160315 4ujc:BD (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160316 4ujc:BE (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160317 4ujc:BG (9.5) BS01 rna N/A GO:0042254 ... N/A 25064512
    160318 4ujc:BG (9.5) BS02 rna N/A GO:0042254 ... N/A 25064512
    160319 4ujc:BH (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160320 4ujc:BI (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160321 4ujc:BI (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160322 4ujc:BI (9.5) BS03 rna N/A GO:0003735 ... N/A 25064512
    160323 4ujc:BJ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160324 4ujc:BJ (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160325 4ujc:BJ (9.5) BS03 rna N/A GO:0003735 ... N/A 25064512
    160326 4ujc:BL (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160327 4ujc:BL (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160328 4ujc:BM (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160329 4ujc:BN (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160330 4ujc:BN (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160331 4ujc:BO (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160332 4ujc:BP (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160333 4ujc:BP (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160334 4ujc:BQ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160335 4ujc:BR (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160336 4ujc:BR (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    160337 4ujc:BS (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160338 4ujc:BS (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160339 4ujc:BT (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160340 4ujc:BT (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160341 4ujc:BU (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160342 4ujc:BV (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160343 4ujc:BX (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160344 4ujc:BX (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160345 4ujc:BY (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160346 4ujc:BY (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    160347 4ujc:BZ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160348 4ujc:Ba (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160349 4ujc:Bb (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160350 4ujc:Bc (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160351 4ujc:Bd (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160352 4ujc:Be (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160353 4ujc:Bf (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160354 4ujc:Bg (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160355 4ujc:Bh (9.5) BS01 rna N/A GO:0000463 ... N/A 25064512
    160356 4ujc:Bh (9.5) BS02 rna N/A GO:0000463 ... N/A 25064512
    160357 4ujc:Bi (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160358 4ujc:Bj (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160359 4ujc:Bj (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160360 4ujc:Bk (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160361 4ujc:Bl (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160362 4ujc:Bl (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160363 4ujc:Bm (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160364 4ujc:Bo (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160365 4ujc:Bo (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160366 4ujc:Bp (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160367 4ujc:Bt (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160368 4ujc:Bu (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160369 4ujc:CA (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160370 4ujc:CB (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160371 4ujc:CC (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160372 4ujc:CC (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    160373 4ujc:CD (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160374 4ujc:CE (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160375 4ujc:CF (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160376 4ujc:CF (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    160377 4ujc:CG (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160378 4ujc:CH (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160379 4ujc:CI (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160380 4ujc:CI (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160381 4ujc:CJ (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160382 4ujc:CL (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160383 4ujc:CM (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160384 4ujc:CN (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160385 4ujc:CO (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160386 4ujc:CO (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160387 4ujc:CP (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160388 4ujc:CQ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160389 4ujc:CQ (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160390 4ujc:CR (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160391 4ujc:CS (9.5) BS01 rna N/A GO:0003676 ... N/A 25064512
    160392 4ujc:CT (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160393 4ujc:CU (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    160394 4ujc:CW (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160395 4ujc:CX (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160396 4ujc:CY (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160397 4ujc:Ca (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160398 4ujc:Ca (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    160399 4ujc:Cb (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    160400 4ujc:Cb (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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