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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160001 4uer:D (6.47) BS01 rna ? GO:0003723 ... A0A0J9X206 25664723
    160002 4uer:E (6.47) BS01 rna ? GO:0003723 ... A0A0J9X207 25664723
    160003 4uer:F (6.47) BS01 rna ? GO:0003723 ... A0A0J9X208 25664723
    160004 4uer:G (6.47) BS01 rna ? GO:0000028 ... A0A0J9X209 25664723
    160005 4uer:H (6.47) BS01 rna ? GO:0003735 ... A0A0J9X210 25664723
    160006 4uer:I (6.47) BS01 rna ? GO:0000462 ... A0A0J9X211 25664723
    160007 4uer:J (6.47) BS01 rna ? GO:0003723 ... A0A0J9X213 25664723
    160008 4uer:K (6.47) BS01 rna ? GO:0000028 ... A0A0J9X214 25664723
    160009 4uer:L (6.47) BS01 rna ? GO:0003735 ... Q875Q2 25664723
    160010 4uer:M (6.47) BS01 rna ? GO:0003676 ... A0A0J9X215 25664723
    160011 4uer:N (6.47) BS01 rna ? GO:0003735 ... A0A0J9X216 25664723
    160012 4uer:N (6.47) BS02 ZN ? GO:0003735 ... A0A0J9X216 25664723
    160013 4uer:O (6.47) BS01 rna ? GO:0003735 ... A0A0J9X217 25664723
    160014 4uer:P (6.47) BS01 rna ? GO:0003735 ... Q875Q1 25664723
    160015 4uer:Q (6.47) BS01 rna ? GO:0003735 ... A0A0J9X218 25664723
    160016 4uer:R (6.47) BS01 rna ? GO:0001934 ... A0A0J9X219 25664723
    160017 4uer:S (6.47) BS01 rna ? GO:0000028 ... A0A0J9X220 25664723
    160018 4uer:T (6.47) BS01 rna ? GO:0000028 ... A0A0J9X222 25664723
    160019 4uer:U (6.47) BS01 rna ? GO:0003735 ... A0A0J9X223 25664723
    160020 4uer:V (6.47) BS01 rna ? GO:0003735 ... A0A0J9X224 25664723
    160021 4uer:W (6.47) BS01 rna ? GO:0003723 ... A0A0J9X225 25664723
    160022 4uer:X (6.47) BS01 rna ? GO:0003735 ... A0A0J9X226 25664723
    160023 4uer:Y (6.47) BS01 rna ? GO:0003735 ... A0A0J9X227 25664723
    160024 4uer:b (6.47) BS01 rna ? GO:0001732 ... A0A0J9X230 25664723
    160025 4uer:c (6.47) BS01 rna ? GO:0001732 ... A0A0J9X231 25664723
    160026 4uew:A (2.08) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160027 4uew:A (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    160028 4uew:A (2.08) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160029 4uew:B (2.08) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160030 4uew:B (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    160031 4uew:B (2.08) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160032 4uew:C (2.08) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160033 4uew:C (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    160034 4uew:C (2.08) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    160035 4ufa:A (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160036 4ufa:A (1.8) BS02 SAC 3.4.15.1 GO:0006508 ... P12821 26403559
    160037 4ufa:A (1.8) BS03 ASP 3.4.15.1 GO:0006508 ... P12821 26403559
    160038 4ufa:B (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160039 4ufa:B (1.8) BS02 SAC 3.4.15.1 GO:0006508 ... P12821 26403559
    160040 4ufa:B (1.8) BS03 ASP 3.4.15.1 GO:0006508 ... P12821 26403559
    160041 4ufb:A (1.8) BS01 LYS 3.4.15.1 GO:0006508 ... P12821 26403559
    160042 4ufb:A (1.8) BS02 PRO 3.4.15.1 GO:0006508 ... P12821 26403559 BindingDB: Ki=86000nM
    160043 4ufb:A (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160044 4ufb:B (1.8) BS01 LYS 3.4.15.1 GO:0006508 ... P12821 26403559
    160045 4ufb:B (1.8) BS02 PRO 3.4.15.1 GO:0006508 ... P12821 26403559 BindingDB: Ki=86000nM
    160046 4ufb:B (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160047 4ufb:C (1.8) BS01 LYS 3.4.15.1 GO:0006508 ... P12821 26403559
    160048 4ufb:C (1.8) BS02 PRO 3.4.15.1 GO:0006508 ... P12821 26403559 BindingDB: Ki=86000nM
    160049 4ufb:C (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160050 4ufb:D (1.8) BS01 LYS 3.4.15.1 GO:0006508 ... P12821 26403559
    160051 4ufb:D (1.8) BS02 PRO 3.4.15.1 GO:0006508 ... P12821 26403559 BindingDB: Ki=86000nM
    160052 4ufb:D (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26403559
    160053 4ufk:A (2.402) BS01 LDU 3.2.1.46 GO:0004336 ... P54818 26029356 MOAD: Ki=130uM
    PDBbind: -logKd/Ki=3.89, Ki=130uM
    160054 4ufk:A (2.402) BS02 CA 3.2.1.46 GO:0004336 ... P54818 26029356
    160055 4ufl:A (2.4) BS01 DZX 3.2.1.46 GO:0004336 ... P54818 26029356 MOAD: Ki=2.3mM
    PDBbind: -logKd/Ki=2.64, Ki=2.3mM
    160056 4ufl:A (2.4) BS02 CA 3.2.1.46 GO:0004336 ... P54818 26029356
    160057 4ufm:A (2.4) BS01 DGJ 3.2.1.46 GO:0004336 ... P54818 26029356 MOAD: Ki=190uM
    PDBbind: -logKd/Ki=3.72, Ki=190uM
    160058 4ufm:A (2.4) BS02 CA 3.2.1.46 GO:0004336 ... P54818 26029356
    160059 4uft:B (4.3) BS01 rna ? GO:0005198 ... P10050 25883315
    160060 4ufv:A (1.75) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160061 4ufv:A (1.75) BS02 31A 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160062 4ufv:A (1.75) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160063 4ufv:B (1.75) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160064 4ufv:B (1.75) BS02 31A 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160065 4ufv:B (1.75) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160066 4ufv:C (1.75) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160067 4ufv:C (1.75) BS02 31A 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160068 4ufv:C (1.75) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160069 4ufv:C (1.75) BS04 GOA 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160070 4ufw:A (1.5) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160071 4ufw:A (1.5) BS02 7Y6 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160072 4ufw:A (1.5) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160073 4ufw:B (1.5) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160074 4ufw:B (1.5) BS02 7Y6 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160075 4ufw:B (1.5) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160076 4ufw:C (1.5) BS01 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160077 4ufw:C (1.5) BS02 7Y6 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160078 4ufw:C (1.5) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160079 4ufx:A (1.49) BS01 80O 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160080 4ufx:A (1.49) BS02 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160081 4ufx:A (1.49) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160082 4ufx:B (1.49) BS01 80O 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160083 4ufx:B (1.49) BS02 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160084 4ufx:B (1.49) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160085 4ufx:C (1.49) BS01 80O 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160086 4ufx:C (1.49) BS02 NHW 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160087 4ufx:C (1.49) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    160088 4ug0:LA (3.6) BS01 rna ? GO:0002181 ... P62917 25901680
    160089 4ug0:LA (3.6) BS02 rna ? GO:0002181 ... P62917 25901680
    160090 4ug0:LB (3.6) BS01 rna ? GO:0002181 ... P39023 25901680
    160091 4ug0:LC (3.6) BS01 rna ? GO:0002181 ... P36578 25901680
    160092 4ug0:LC (3.6) BS02 rna ? GO:0002181 ... P36578 25901680
    160093 4ug0:LD (3.6) BS01 rna ? GO:0000027 ... P46777 25901680
    160094 4ug0:LD (3.6) BS02 rna ? GO:0000027 ... P46777 25901680
    160095 4ug0:LE (3.6) BS01 rna ? GO:0000027 ... Q02878 25901680
    160096 4ug0:LF (3.6) BS01 rna ? GO:0000463 ... P18124 25901680
    160097 4ug0:LF (3.6) BS02 rna ? GO:0000463 ... P18124 25901680
    160098 4ug0:LG (3.6) BS01 rna ? GO:0000470 ... P62424 25901680
    160099 4ug0:LG (3.6) BS02 rna ? GO:0000470 ... P62424 25901680
    160100 4ug0:LH (3.6) BS01 rna ? GO:0002181 ... P32969 25901680
    160101 4ug0:LI (3.6) BS01 rna ? GO:0000027 ... Q96L21 25901680
    160102 4ug0:LI (3.6) BS02 rna ? GO:0000027 ... Q96L21 25901680
    160103 4ug0:LJ (3.6) BS01 rna ? GO:0000027 ... P62913 25901680
    160104 4ug0:LJ (3.6) BS02 rna ? GO:0000027 ... P62913 25901680
    160105 4ug0:LL (3.6) BS01 rna ? GO:0001824 ... P26373 25901680
    160106 4ug0:LL (3.6) BS02 rna ? GO:0001824 ... P26373 25901680
    160107 4ug0:LM (3.6) BS01 rna ? GO:0002181 ... P50914 25901680
    160108 4ug0:LN (3.6) BS01 rna ? GO:0002181 ... P61313 25901680
    160109 4ug0:LN (3.6) BS02 rna ? GO:0002181 ... P61313 25901680
    160110 4ug0:LO (3.6) BS01 rna ? GO:0002181 ... P40429 25901680
    160111 4ug0:LP (3.6) BS01 rna ? GO:0002181 ... P18621 25901680
    160112 4ug0:LP (3.6) BS02 rna ? GO:0002181 ... P18621 25901680
    160113 4ug0:LP (3.6) BS03 MG ? GO:0002181 ... P18621 25901680
    160114 4ug0:LQ (3.6) BS01 rna ? GO:0002181 ... Q07020 25901680
    160115 4ug0:LR (3.6) BS01 rna ? GO:0002181 ... P84098 25901680
    160116 4ug0:LR (3.6) BS02 rna ? GO:0002181 ... P84098 25901680
    160117 4ug0:LS (3.6) BS01 rna ? GO:0002181 ... Q02543 25901680
    160118 4ug0:LS (3.6) BS02 rna ? GO:0002181 ... Q02543 25901680
    160119 4ug0:LT (3.6) BS01 rna ? GO:0002181 ... P46778 25901680
    160120 4ug0:LT (3.6) BS02 rna ? GO:0002181 ... P46778 25901680
    160121 4ug0:LU (3.6) BS01 rna ? GO:0002181 ... P35268 25901680
    160122 4ug0:LV (3.6) BS01 rna ? GO:0000122 ... P62829 25901680
    160123 4ug0:LW (3.6) BS01 rna ? GO:0000027 ... P83731 25901680
    160124 4ug0:LW (3.6) BS02 rna ? GO:0000027 ... P83731 25901680
    160125 4ug0:LX (3.6) BS01 rna ? GO:0000027 ... P62750 25901680
    160126 4ug0:LX (3.6) BS02 rna ? GO:0000027 ... P62750 25901680
    160127 4ug0:LY (3.6) BS01 rna ? GO:0002181 ... P61254 25901680
    160128 4ug0:LY (3.6) BS02 rna ? GO:0002181 ... P61254 25901680
    160129 4ug0:LZ (3.6) BS01 rna ? GO:0002181 ... P61353 25901680
    160130 4ug0:La (3.6) BS01 rna ? GO:0002181 ... P46776 25901680
    160131 4ug0:Lb (3.6) BS01 rna ? GO:0002181 ... P47914 25901680
    160132 4ug0:Lc (3.6) BS01 rna ? GO:0002181 ... P62888 25901680
    160133 4ug0:Ld (3.6) BS01 rna ? GO:0002181 ... P62899 25901680
    160134 4ug0:Le (3.6) BS01 rna ? GO:0002181 ... P62910 25901680
    160135 4ug0:Lf (3.6) BS01 rna ? GO:0000049 ... P18077 25901680
    160136 4ug0:Lg (3.6) BS01 rna ? GO:0002181 ... P49207 25901680
    160137 4ug0:Lg (3.6) BS02 ZN ? GO:0002181 ... P49207 25901680
    160138 4ug0:Lh (3.6) BS01 rna ? GO:0000463 ... P42766 25901680
    160139 4ug0:Lh (3.6) BS02 rna ? GO:0000463 ... P42766 25901680
    160140 4ug0:Li (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 25901680
    160141 4ug0:Lj (3.6) BS01 rna ? GO:0002181 ... P61927 25901680
    160142 4ug0:Lj (3.6) BS02 rna ? GO:0002181 ... P61927 25901680
    160143 4ug0:Lj (3.6) BS03 ZN ? GO:0002181 ... P61927 25901680
    160144 4ug0:Lk (3.6) BS01 rna ? GO:0001501 ... P63173 25901680
    160145 4ug0:Ll (3.6) BS01 rna ? GO:0002181 ... P62891 25901680
    160146 4ug0:Ll (3.6) BS02 rna ? GO:0002181 ... P62891 25901680
    160147 4ug0:Lm (3.6) BS01 rna ? GO:0002181 ... P62987 25901680
    160148 4ug0:Lm (3.6) BS02 ZN ? GO:0002181 ... P62987 25901680
    160149 4ug0:Lo (3.6) BS01 rna ? GO:0002181 ... P83881 25901680
    160150 4ug0:Lo (3.6) BS02 rna ? GO:0002181 ... P83881 25901680
    160151 4ug0:Lp (3.6) BS01 rna ? GO:0002181 ... P61513 25901680
    160152 4ug0:Lp (3.6) BS02 ZN ? GO:0002181 ... P61513 25901680
    160153 4ug0:Lr (3.6) BS01 rna ? GO:0002181 ... P46779 25901680
    160154 4ug0:Lz (3.6) BS01 rna ? GO:0002181 ... P62906 25901680
    160155 4ug0:SA (3.6) BS01 rna ? GO:0000028 ... P08865 25901680
    160156 4ug0:SB (3.6) BS01 rna ? GO:0002181 ... P61247 25901680
    160157 4ug0:SC (3.6) BS01 rna ? GO:0002181 ... P15880 25901680
    160158 4ug0:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 25901680
    160159 4ug0:SE (3.6) BS01 rna ? GO:0002181 ... P62701 25901680
    160160 4ug0:SF (3.6) BS01 rna ? GO:0000028 ... P46782 25901680
    160161 4ug0:SF (3.6) BS02 rna ? GO:0000028 ... P46782 25901680
    160162 4ug0:SG (3.6) BS01 rna ? GO:0000082 ... P62753 25901680
    160163 4ug0:SH (3.6) BS01 rna ? GO:0001843 ... P62081 25901680
    160164 4ug0:SI (3.6) BS01 rna ? GO:0000462 ... P62241 25901680
    160165 4ug0:SI (3.6) BS02 rna ? GO:0000462 ... P62241 25901680
    160166 4ug0:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 25901680
    160167 4ug0:SK (3.6) BS01 rna ? GO:0002181 ... P46783 25901680
    160168 4ug0:SL (3.6) BS01 rna ? GO:0002181 ... P62280 25901680
    160169 4ug0:SM (3.6) BS01 rna N/A GO:0003735 ... N/A 25901680
    160170 4ug0:SN (3.6) BS01 rna ? GO:0002181 ... P62277 25901680
    160171 4ug0:SO (3.6) BS01 rna ? GO:0000028 ... P62263 25901680
    160172 4ug0:SP (3.6) BS01 rna ? GO:0000028 ... P62841 25901680
    160173 4ug0:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 25901680
    160174 4ug0:SR (3.6) BS01 rna ? GO:0002181 ... P08708 25901680
    160175 4ug0:SS (3.6) BS01 rna ? GO:0002181 ... P62269 25901680
    160176 4ug0:ST (3.6) BS01 rna ? GO:0000028 ... P39019 25901680
    160177 4ug0:SU (3.6) BS01 rna ? GO:0002181 ... P60866 25901680
    160178 4ug0:SW (3.6) BS01 rna ? GO:0002181 ... P62244 25901680
    160179 4ug0:SX (3.6) BS01 rna ? GO:0002181 ... P62266 25901680
    160180 4ug0:SY (3.6) BS01 rna ? GO:0002181 ... P62847 25901680
    160181 4ug0:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 25901680
    160182 4ug0:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 25901680
    160183 4ug0:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 25901680
    160184 4ug0:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 25901680
    160185 4ug0:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 25901680
    160186 4ug0:Se (3.6) BS01 rna ? GO:0003735 ... P62861 25901680
    160187 4ug0:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 25901680
    160188 4ug0:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 25901680
    160189 4ug2:A (2.6) BS01 NGI ? GO:0001609 ... P29274 25762024 BindingDB: Ki=27nM, Kd=36nM, IC50=19nM, EC50=19953nM
    160190 4ug2:B (2.6) BS01 NGI ? GO:0001609 ... P29274 25762024 BindingDB: Ki=27nM, Kd=36nM, IC50=19nM, EC50=19953nM
    160191 4ug5:A (2.352) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160192 4ug5:A (2.352) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160193 4ug5:A (2.352) BS03 XFK 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.03e+3nM
    160194 4ug6:A (1.81) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160195 4ug6:A (1.81) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    160196 4ug6:A (1.81) BS03 XFJ 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.68e+3nM
    160197 4ug6:A (1.81) BS04 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    160198 4ug6:A (1.81) BS05 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    160199 4ug7:A (1.76) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    160200 4ug7:A (1.76) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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