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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159801 4ucn:A (1.8) BS01 JRB 2.3.1.97 GO:0004379 ... Q4Q5S8 25945713
    159802 4ucn:A (1.8) BS02 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 25945713
    159803 4ucp:A (1.5) BS01 9X3 2.3.1.97 GO:0004379 ... Q4Q5S8 25945713 MOAD: Kd=200uM
    159804 4ucp:A (1.5) BS02 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 25945713
    159805 4ucq:A (2.6) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159806 4ucq:A (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159807 4ucq:A (2.6) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159808 4ucq:B (2.6) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159809 4ucq:B (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159810 4ucq:B (2.6) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159811 4ucq:C (2.6) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159812 4ucq:C (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159813 4ucq:C (2.6) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159814 4ucq:Q (2.6) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 25666617
    159815 4ucq:Q (2.6) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159816 4ucq:Q (2.6) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159817 4ucq:R (2.6) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 25666617
    159818 4ucq:R (2.6) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159819 4ucq:R (2.6) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159820 4ucq:S (2.6) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159821 4ucq:S (2.6) BS02 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159822 4ucw:A (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159823 4ucw:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159824 4ucw:A (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159825 4ucw:B (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159826 4ucw:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159827 4ucw:B (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159828 4ucw:C (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159829 4ucw:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159830 4ucw:C (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159831 4ucw:Q (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 25666617
    159832 4ucw:Q (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159833 4ucw:Q (2.3) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159834 4ucw:R (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 25666617
    159835 4ucw:R (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159836 4ucw:R (2.3) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159837 4ucw:S (2.3) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25666617
    159838 4ucw:S (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159839 4ucw:S (2.3) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159840 4ucx:A (1.95) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159841 4ucx:A (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159842 4ucx:A (1.95) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159843 4ucx:B (1.95) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159844 4ucx:B (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159845 4ucx:B (1.95) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159846 4ucx:C (1.95) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159847 4ucx:C (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    159848 4ucx:C (1.95) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25666617
    159849 4ucx:Q (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159850 4ucx:Q (1.95) BS02 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159851 4ucx:R (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159852 4ucx:R (1.95) BS02 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159853 4ucx:S (1.95) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25666617
    159854 4ucx:S (1.95) BS02 MG 1.12.2.1 GO:0008901 ... P18188 25666617
    159855 4ud2:A (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159856 4ud2:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159857 4ud2:A (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159858 4ud2:B (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159859 4ud2:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159860 4ud2:B (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159861 4ud2:C (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159862 4ud2:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159863 4ud2:C (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159864 4ud6:A (2.12) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159865 4ud6:A (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159866 4ud6:A (2.12) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159867 4ud6:B (2.12) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159868 4ud6:B (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159869 4ud6:B (2.12) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159870 4ud6:C (2.12) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159871 4ud6:C (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159872 4ud6:C (2.12) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159873 4ud7:A (1.6) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159874 4ud7:A (1.6) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159875 4ud7:B (1.6) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159876 4ud7:B (1.6) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159877 4ud7:C (1.6) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159878 4ud7:D (1.6) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159879 4udu:C (2.5) BS01 ZN ? GO:0005576 ... P12993 26147596
    159880 4udv:A (3.35) BS01 rna ? GO:0005198 ... P69687 25528571
    159881 4udx:X (1.03) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159882 4udx:X (1.03) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159883 4udx:X (1.03) BS03 WCC 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159884 4udx:X (1.03) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159885 4udy:X (1.09) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159886 4udy:X (1.09) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159887 4udy:X (1.09) BS03 WCC 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159888 4udy:X (1.09) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159889 4udy:X (1.09) BS05 0NM 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    159890 4ue1:A (1.45) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159891 4ue1:A (1.45) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159892 4ue1:B (1.45) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159893 4ue1:B (1.45) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159894 4ue1:C (1.45) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159895 4ue1:D (1.45) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 27532490
    159896 4ue2:A (2.02) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159897 4ue2:A (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159898 4ue2:A (2.02) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159899 4ue2:B (2.02) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159900 4ue2:B (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159901 4ue2:B (2.02) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159902 4ue2:C (2.02) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159903 4ue2:C (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159904 4ue2:C (2.02) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159905 4ue2:Q (2.02) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    159906 4ue2:Q (2.02) BS02 SF4 1.12.2.1 GO:0008901 ... P18188 25780984
    159907 4ue2:Q (2.02) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159908 4ue2:Q (2.02) BS04 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159909 4ue2:Q (2.02) BS05 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159910 4ue2:R (2.02) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    159911 4ue2:R (2.02) BS02 SF4 1.12.2.1 GO:0008901 ... P18188 25780984
    159912 4ue2:R (2.02) BS03 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159913 4ue2:R (2.02) BS04 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159914 4ue2:R (2.02) BS05 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159915 4ue2:S (2.02) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 25780984
    159916 4ue2:S (2.02) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159917 4ue2:S (2.02) BS03 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159918 4ue2:S (2.02) BS04 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159919 4ue3:LLL (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159920 4ue3:LLL (1.4) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159921 4ue3:LLL (1.4) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159922 4ue3:MMM (1.4) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159923 4ue3:MMM (1.4) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159924 4ue3:MMM (1.4) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    159925 4ue3:SSS (1.4) BS01 SF4 1.12.99.6 GO:0008901 ... P69739 26619250
    159926 4ue3:SSS (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    159927 4ue3:SSS (1.4) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    159928 4ue3:TTT (1.4) BS01 SF4 1.12.99.6 GO:0008901 ... P69739 26619250
    159929 4ue3:TTT (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    159930 4ue3:TTT (1.4) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    159931 4ue4:C (7.0) BS01 rna 3.6.5.4 GO:0003924 ... P37105 26344568
    159932 4ue5:C (9.0) BS01 rna ? GO:0003723 ... Q00004 26344568
    159933 4ue5:D (9.0) BS01 rna 3.6.5.4 GO:0003924 ... P61010 26344568
    159934 4ue5:D (9.0) BS02 peptide 3.6.5.4 GO:0003924 ... P61010 26344568
    159935 4ue5:E (9.0) BS01 rna ? GO:0006614 ... P21262 26344568
    159936 4ue6:A (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159937 4ue6:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159938 4ue6:A (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159939 4ue6:B (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159940 4ue6:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159941 4ue6:B (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159942 4ue6:C (2.3) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159943 4ue6:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    159944 4ue6:C (2.3) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 25780984
    159945 4ue6:Q (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159946 4ue6:Q (2.3) BS02 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159947 4ue6:Q (2.3) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159948 4ue6:R (2.3) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    159949 4ue6:R (2.3) BS02 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159950 4ue6:R (2.3) BS03 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159951 4ue6:R (2.3) BS04 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159952 4ue6:S (2.3) BS01 FCO 1.12.2.1 GO:0008901 ... P18188 25780984
    159953 4ue6:S (2.3) BS02 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    159954 4ue6:S (2.3) BS03 MG 1.12.2.1 GO:0008901 ... P18188 25780984
    159955 4uec:A (2.4) BS01 MGT ? GO:0003723 ... P48598 25702871
    159956 4uec:C (2.4) BS01 MGT ? GO:0003723 ... P48598 25702871
    159957 4uej:A (1.74) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159958 4uej:A (1.74) BS02 GOL 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159959 4uej:B (1.74) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159960 4uej:B (1.74) BS02 GOL 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159961 4uek:A (1.9) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159962 4uek:A (1.9) BS02 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159963 4uek:B (1.9) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159964 4uek:B (1.9) BS02 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159965 4ueo:A (2.0) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159966 4ueo:A (2.0) BS02 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159967 4ueo:B (2.0) BS01 ZN 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    159968 4ueq:A (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159969 4ueq:A (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159970 4ueq:A (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159971 4ueq:B (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159972 4ueq:B (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159973 4ueq:B (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159974 4ueq:C (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159975 4ueq:C (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159976 4ueq:C (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159977 4ueq:D (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159978 4ueq:D (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159979 4ueq:D (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159980 4ueq:E (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159981 4ueq:E (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159982 4ueq:E (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159983 4ueq:F (1.7) BS01 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159984 4ueq:F (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    159985 4ueq:F (1.7) BS03 SF4 1.12.2.1 GO:0008901 ... E1K248 25780984
    159986 4ueq:F (1.7) BS04 CO3 1.12.2.1 GO:0008901 ... E1K248 25780984
    159987 4uer:0 (6.47) BS01 rna ? GO:0003723 ... A0A0J9X202 25664723
    159988 4uer:1 (6.47) BS01 rna ? GO:0000028 ... A0A0J9X212 25664723
    159989 4uer:2 (6.47) BS01 rna ? GO:0000462 ... A0A0J9X221 25664723
    159990 4uer:3 (6.47) BS01 rna ? GO:0003735 ... A0A0J9X232 25664723
    159991 4uer:4 (6.47) BS01 rna ? GO:0003735 ... A0A0J9X233 25664723
    159992 4uer:5 (6.47) BS01 rna ? GO:0003729 ... A0A0J9X234 25664723
    159993 4uer:5 (6.47) BS02 ZN ? GO:0003729 ... A0A0J9X234 25664723
    159994 4uer:6 (6.47) BS01 rna ? GO:0000028 ... A0A0J9X235 25664723
    159995 4uer:7 (6.47) BS01 rna ? GO:0003723 ... A0A0J9X236 25664723
    159996 4uer:8 (6.47) BS01 rna ? GO:0003735 ... A0A0J9X237 25664723
    159997 4uer:9 (6.47) BS01 rna ? GO:0003735 ... A0A0J9X203 25664723
    159998 4uer:9 (6.47) BS02 ZN ? GO:0003735 ... A0A0J9X203 25664723
    159999 4uer:B (6.47) BS01 rna ? GO:0000028 ... A0A0J9X204 25664723
    160000 4uer:C (6.47) BS01 rna ? GO:0003723 ... A0A0J9X205 25664723
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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