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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159201 4u6f:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    159202 4u6f:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    159203 4u6f:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    159204 4u6f:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    159205 4u6f:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    159206 4u6f:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    159207 4u6f:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    159208 4u6f:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    159209 4u6f:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    159210 4u6f:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    159211 4u6f:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    159212 4u6f:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    159213 4u6f:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    159214 4u6f:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    159215 4u6f:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    159216 4u6f:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    159217 4u6f:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    159218 4u6f:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    159219 4u6f:o2 (3.1) BS02 OHX ? GO:0002181 ... P38061 25209664
    159220 4u6f:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    159221 4u6f:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 25209664
    159222 4u6f:o3 (3.1) BS03 OHX ? GO:0000027 ... P05744 25209664
    159223 4u6f:o4 (3.1) BS01 rna ? GO:0002181 ... P87262 25209664
    159224 4u6f:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    159225 4u6f:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    159226 4u6f:o6 (3.1) BS01 rna ? GO:0002181 ... P05745 25209664
    159227 4u6f:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    159228 4u6f:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    159229 4u6f:o7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    159230 4u6f:o7 (3.1) BS04 ZN ? GO:0000448 ... P49166 25209664
    159231 4u6f:o7 (3.1) BS05 OHX ? GO:0000448 ... P49166 25209664
    159232 4u6f:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    159233 4u6f:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    159234 4u6f:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    159235 4u6f:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 25209664
    159236 4u6f:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    159237 4u6f:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    159238 4u6f:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    159239 4u6f:q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    159240 4u6f:q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    159241 4u6f:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    159242 4u6f:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 25209664
    159243 4u6f:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    159244 4u6f:s0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    159245 4u6f:s1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    159246 4u6f:s1 (3.1) BS02 OHX ? GO:0000462 ... P33442 25209664
    159247 4u6f:s1 (3.1) BS03 OHX ? GO:0000462 ... P33442 25209664
    159248 4u6f:s2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    159249 4u6f:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    159250 4u6f:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    159251 4u6f:s4 (3.1) BS02 MG ? GO:0002181 ... P0CX35 25209664
    159252 4u6f:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 25209664
    159253 4u6f:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    159254 4u6f:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    159255 4u6f:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    159256 4u6f:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    159257 4u6f:s8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    159258 4u6f:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    159259 4u6f:sM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    159260 4u6f:sM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    159261 4u6f:sR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    159262 4u6i:C (2.1) BS01 B12 ? GO:0005198 ... Q8XLZ0 25484204
    159263 4u72:A (2.0) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    159264 4u72:A (2.0) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    159265 4u72:B (2.0) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    159266 4u72:B (2.0) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    159267 4u74:A (2.31) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    159268 4u74:A (2.31) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    159269 4u74:B (2.31) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    159270 4u74:B (2.31) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    159271 4u7b:A (3.09) BS01 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159272 4u7b:A (3.09) BS02 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159273 4u7b:A (3.09) BS03 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159274 4u7b:B (3.09) BS01 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159275 4u7b:B (3.09) BS02 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159276 4u7b:B (3.09) BS03 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159277 4u7b:B (3.09) BS04 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159278 4u7b:G (3.09) BS01 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159279 4u7b:G (3.09) BS02 dna 3.1.-.- GO:0000014 ... Q7JQ07 25662605
    159280 4u7f:A (1.8) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159281 4u7f:A (1.8) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159282 4u7f:A (1.8) BS03 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159283 4u7f:A (1.8) BS04 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159284 4u7f:B (1.8) BS01 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159285 4u7f:B (1.8) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159286 4u7f:B (1.8) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159287 4u7f:B (1.8) BS04 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159288 4u7g:A (1.96) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159289 4u7g:A (1.96) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159290 4u7g:A (1.96) BS03 K17 1.10.5.1 GO:0001512 ... P16083 25379648 MOAD: Kd=18.1nM
    BindingDB: Kd=18.1nM, IC50=79.4nM
    159291 4u7g:A (1.96) BS04 K17 1.10.5.1 GO:0001512 ... P16083 25379648 MOAD: Kd=18.1nM
    BindingDB: Kd=18.1nM, IC50=79.4nM
    159292 4u7g:B (1.96) BS01 K17 1.10.5.1 GO:0001512 ... P16083 25379648 MOAD: Kd=18.1nM
    BindingDB: Kd=18.1nM, IC50=79.4nM
    159293 4u7g:B (1.96) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159294 4u7g:B (1.96) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159295 4u7g:B (1.96) BS04 K17 1.10.5.1 GO:0001512 ... P16083 25379648 MOAD: Kd=18.1nM
    BindingDB: Kd=18.1nM, IC50=79.4nM
    159296 4u7h:A (1.48) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159297 4u7h:A (1.48) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159298 4u7h:A (1.48) BS03 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159299 4u7h:A (1.48) BS04 K25 1.10.5.1 GO:0001512 ... P16083 25379648 BindingDB: Kd=36.4nM, IC50=484nM
    159300 4u7h:B (1.48) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 25379648
    159301 4u7h:B (1.48) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 25379648
    159302 4u7h:B (1.48) BS03 K25 1.10.5.1 GO:0001512 ... P16083 25379648 MOAD: Kd=36.4nM
    BindingDB: Kd=36.4nM, IC50=484nM
    159303 4u7o:A (2.395) BS01 AN2 2.7.13.3 GO:0000155 ... A0A0M3KKX3 28994408 PDBbind: -logKd/Ki=3.35, Kd=450uM
    159304 4u7o:B (2.395) BS01 AN2 2.7.13.3 GO:0000155 ... A0A0M3KKX3 28994408
    159305 4u7u:D (3.003) BS01 rna 3.1.-.- GO:0003723 ... Q46897 25118175
    159306 4u7u:E (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159307 4u7u:F (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159308 4u7u:G (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159309 4u7u:H (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159310 4u7u:I (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159311 4u7u:J (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159312 4u7u:K (3.003) BS01 rna ? GO:0003723 ... Q46898 25118175
    159313 4u7u:M (3.003) BS01 rna ? GO:0003677 ... Q46901 25118175
    159314 4u7u:P (3.003) BS01 rna 3.1.-.- GO:0003723 ... Q46897 25118175
    159315 4u7u:Q (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159316 4u7u:R (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159317 4u7u:S (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159318 4u7u:T (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159319 4u7u:U (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159320 4u7u:V (3.003) BS01 rna ? GO:0003723 ... Q46899 25118175
    159321 4u7u:W (3.003) BS01 rna ? GO:0003723 ... Q46898 25118175
    159322 4u82:A (1.66) BS01 FPS 2.5.1.- GO:0000287 ... P60477 25574764 MOAD: ic50=1.9uM
    PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    159323 4u87:A (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    159324 4u87:B (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    159325 4u87:C (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    159326 4u89:A (1.4) BS01 COA 2.7.8.7 GO:0000287 ... O33336 N/A
    159327 4u8d:A (2.3) BS01 MG ? GO:0001508 ... P30626 N/A
    159328 4u8d:A (2.3) BS02 MG ? GO:0001508 ... P30626 N/A
    159329 4u8d:B (2.3) BS01 MG ? GO:0001508 ... P30626 N/A
    159330 4u8d:B (2.3) BS02 MG ? GO:0001508 ... P30626 N/A
    159331 4u8u:A (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159332 4u8u:B (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159333 4u8u:C (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159334 4u8u:D (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159335 4u8u:E (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159336 4u8u:F (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159337 4u8u:F (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159338 4u8u:G (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159339 4u8u:G (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159340 4u8u:H (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159341 4u8u:H (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159342 4u8u:I (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159343 4u8u:J (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159344 4u8u:J (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159345 4u8u:K (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159346 4u8u:L (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159347 4u8u:L (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159348 4u8u:P (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159349 4u8u:Q (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159350 4u8u:Q (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159351 4u8u:R (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159352 4u8u:R (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159353 4u8u:S (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159354 4u8u:T (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159355 4u8u:U (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159356 4u8u:U (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159357 4u8u:V (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159358 4u8u:V (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159359 4u8u:W (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159360 4u8u:W (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159361 4u8u:X (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159362 4u8u:Y (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159363 4u8u:Y (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159364 4u8u:Z (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159365 4u8u:a (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159366 4u8u:e (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159367 4u8u:e (3.2) BS02 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159368 4u8u:f (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159369 4u8u:f (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159370 4u8u:g (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159371 4u8u:h (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159372 4u8u:i (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159373 4u8u:j (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159374 4u8u:k (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159375 4u8u:k (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159376 4u8u:l (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159377 4u8u:m (3.2) BS01 HEM ? GO:0005344 ... A0A0M3KKX5 26057666
    159378 4u8u:n (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159379 4u8u:n (3.2) BS02 HEM ? GO:0001666 ... A0A0M3KKX6 26057666
    159380 4u8u:o (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX7 26057666
    159381 4u8u:p (3.2) BS01 HEM ? GO:0001666 ... A0A0M3KKX8 26057666
    159382 4u8v:B (2.298) BS01 MIY ? GO:0005515 ... P31224 25248080
    159383 4u8y:B (2.099) BS01 MIY ? GO:0005515 ... P31224 25248080
    159384 4u95:B (2.0) BS01 MIY ? GO:0005515 ... P31224 25248080
    159385 4u99:A (2.0) BS01 HEM ? GO:0003674 ... Q8EF49 25253889
    159386 4u99:A (2.0) BS02 ZN ? GO:0003674 ... Q8EF49 25253889
    159387 4u99:B (2.0) BS01 HEM ? GO:0003674 ... Q8EF49 25253889
    159388 4u99:B (2.0) BS02 ZN ? GO:0003674 ... Q8EF49 25253889
    159389 4u9b:A (1.65) BS01 HEM ? GO:0003674 ... Q8EF49 25253889
    159390 4u9b:A (1.65) BS02 ZN ? GO:0003674 ... Q8EF49 25253889
    159391 4u9d:A (2.5) BS01 HEC ? GO:0005506 ... P0ABE7 25525249
    159392 4u9d:A (2.5) BS02 ZN ? GO:0005506 ... P0ABE7 25525249
    159393 4u9d:A (2.5) BS03 ZN ? GO:0005506 ... P0ABE7 25525249
    159394 4u9d:A (2.5) BS04 ZN ? GO:0005506 ... P0ABE7 25525249
    159395 4u9d:B (2.5) BS01 ZN ? GO:0005506 ... P0ABE7 25525249
    159396 4u9d:B (2.5) BS02 HEC ? GO:0005506 ... P0ABE7 25525249
    159397 4u9d:B (2.5) BS03 ZN ? GO:0005506 ... P0ABE7 25525249
    159398 4u9d:B (2.5) BS04 ZN ? GO:0005506 ... P0ABE7 25525249
    159399 4u9d:C (2.5) BS01 ZN ? GO:0005506 ... P0ABE7 25525249
    159400 4u9d:C (2.5) BS02 ZN ? GO:0005506 ... P0ABE7 25525249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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