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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159001 4u6f:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    159002 4u6f:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 25209664
    159003 4u6f:C5 (3.1) BS03 OHX ? GO:0000028 ... Q01855 25209664
    159004 4u6f:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    159005 4u6f:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    159006 4u6f:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    159007 4u6f:C8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 25209664
    159008 4u6f:C8 (3.1) BS03 OHX ? GO:0000054 ... P0CX55 25209664
    159009 4u6f:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    159010 4u6f:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    159011 4u6f:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    159012 4u6f:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    159013 4u6f:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    159014 4u6f:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    159015 4u6f:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    159016 4u6f:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    159017 4u6f:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    159018 4u6f:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    159019 4u6f:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    159020 4u6f:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    159021 4u6f:D9 (3.1) BS03 OHX ? GO:0002181 ... P41057 25209664
    159022 4u6f:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    159023 4u6f:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    159024 4u6f:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    159025 4u6f:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    159026 4u6f:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    159027 4u6f:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    159028 4u6f:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    159029 4u6f:L3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    159030 4u6f:L3 (3.1) BS03 OHX ? GO:0000027 ... P14126 25209664
    159031 4u6f:L3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    159032 4u6f:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    159033 4u6f:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    159034 4u6f:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    159035 4u6f:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    159036 4u6f:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    159037 4u6f:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    159038 4u6f:L6 (3.1) BS02 MG ? GO:0000027 ... Q02326 25209664
    159039 4u6f:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    159040 4u6f:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    159041 4u6f:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    159042 4u6f:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    159043 4u6f:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    159044 4u6f:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    159045 4u6f:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    159046 4u6f:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 25209664
    159047 4u6f:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    159048 4u6f:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    159049 4u6f:M1 (3.1) BS03 MG ? GO:0000027 ... Q3E757 25209664
    159050 4u6f:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    159051 4u6f:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    159052 4u6f:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    159053 4u6f:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    159054 4u6f:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    159055 4u6f:M5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    159056 4u6f:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    159057 4u6f:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    159058 4u6f:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    159059 4u6f:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 25209664
    159060 4u6f:M7 (3.1) BS04 OHX ? GO:0000448 ... P05740 25209664
    159061 4u6f:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    159062 4u6f:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    159063 4u6f:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    159064 4u6f:M9 (3.1) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    159065 4u6f:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    159066 4u6f:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    159067 4u6f:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    159068 4u6f:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    159069 4u6f:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    159070 4u6f:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    159071 4u6f:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    159072 4u6f:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    159073 4u6f:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    159074 4u6f:N4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    159075 4u6f:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    159076 4u6f:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    159077 4u6f:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    159078 4u6f:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    159079 4u6f:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    159080 4u6f:N7 (3.1) BS02 OHX ? GO:0002181 ... P0C2H6 25209664
    159081 4u6f:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    159082 4u6f:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 25209664
    159083 4u6f:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 25209664
    159084 4u6f:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    159085 4u6f:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    159086 4u6f:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    159087 4u6f:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    159088 4u6f:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    159089 4u6f:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    159090 4u6f:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 25209664
    159091 4u6f:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 25209664
    159092 4u6f:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    159093 4u6f:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    159094 4u6f:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 25209664
    159095 4u6f:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    159096 4u6f:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    159097 4u6f:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    159098 4u6f:O7 (3.1) BS04 ZN ? GO:0000448 ... P49166 25209664
    159099 4u6f:O7 (3.1) BS05 OHX ? GO:0000448 ... P49166 25209664
    159100 4u6f:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 25209664
    159101 4u6f:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    159102 4u6f:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    159103 4u6f:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    159104 4u6f:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    159105 4u6f:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    159106 4u6f:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    159107 4u6f:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    159108 4u6f:Q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    159109 4u6f:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    159110 4u6f:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    159111 4u6f:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    159112 4u6f:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    159113 4u6f:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    159114 4u6f:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    159115 4u6f:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    159116 4u6f:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 25209664
    159117 4u6f:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    159118 4u6f:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    159119 4u6f:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    159120 4u6f:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    159121 4u6f:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    159122 4u6f:S9 (3.1) BS02 OHX ? GO:0000462 ... O13516 25209664
    159123 4u6f:SM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    159124 4u6f:SM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    159125 4u6f:SR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    159126 4u6f:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    159127 4u6f:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    159128 4u6f:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    159129 4u6f:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    159130 4u6f:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    159131 4u6f:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    159132 4u6f:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    159133 4u6f:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    159134 4u6f:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    159135 4u6f:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 25209664
    159136 4u6f:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    159137 4u6f:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    159138 4u6f:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    159139 4u6f:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    159140 4u6f:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 25209664
    159141 4u6f:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    159142 4u6f:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    159143 4u6f:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    159144 4u6f:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    159145 4u6f:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    159146 4u6f:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    159147 4u6f:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    159148 4u6f:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    159149 4u6f:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    159150 4u6f:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    159151 4u6f:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    159152 4u6f:d9 (3.1) BS03 OHX ? GO:0002181 ... P41057 25209664
    159153 4u6f:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    159154 4u6f:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    159155 4u6f:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    159156 4u6f:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    159157 4u6f:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    159158 4u6f:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    159159 4u6f:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    159160 4u6f:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 25209664
    159161 4u6f:l3 (3.1) BS04 MG ? GO:0000027 ... P14126 25209664
    159162 4u6f:l3 (3.1) BS05 OHX ? GO:0000027 ... P14126 25209664
    159163 4u6f:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    159164 4u6f:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    159165 4u6f:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    159166 4u6f:l4 (3.1) BS04 OHX ? GO:0002181 ... P10664 25209664
    159167 4u6f:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    159168 4u6f:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    159169 4u6f:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 25209664
    159170 4u6f:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 25209664
    159171 4u6f:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    159172 4u6f:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    159173 4u6f:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    159174 4u6f:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    159175 4u6f:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    159176 4u6f:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    159177 4u6f:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    159178 4u6f:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    159179 4u6f:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 25209664
    159180 4u6f:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 25209664
    159181 4u6f:m0 (3.1) BS05 OHX ? GO:0000027 ... P41805 25209664
    159182 4u6f:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    159183 4u6f:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    159184 4u6f:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    159185 4u6f:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    159186 4u6f:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    159187 4u6f:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    159188 4u6f:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    159189 4u6f:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    159190 4u6f:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    159191 4u6f:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 25209664
    159192 4u6f:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    159193 4u6f:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    159194 4u6f:m7 (3.1) BS03 OHX ? GO:0000448 ... P05740 25209664
    159195 4u6f:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    159196 4u6f:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    159197 4u6f:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    159198 4u6f:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    159199 4u6f:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    159200 4u6f:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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