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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    158801 4u56:d2 (3.45) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    158802 4u56:d3 (3.45) BS01 rna ? GO:0000462 ... P0CX29 25209664
    158803 4u56:d4 (3.45) BS01 rna ? GO:0000462 ... P0CX31 25209664
    158804 4u56:d5 (3.45) BS01 rna ? GO:0002181 ... Q3E792 25209664
    158805 4u56:d6 (3.45) BS01 rna ? GO:0003735 ... P39939 25209664
    158806 4u56:d6 (3.45) BS02 ZN ? GO:0003735 ... P39939 25209664
    158807 4u56:d7 (3.45) BS01 rna ? GO:0000028 ... P35997 25209664
    158808 4u56:d8 (3.45) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    158809 4u56:d9 (3.45) BS01 rna ? GO:0002181 ... P41057 25209664
    158810 4u56:d9 (3.45) BS02 ZN ? GO:0002181 ... P41057 25209664
    158811 4u56:e0 (3.45) BS01 rna ? GO:0002181 ... P0CX33 25209664
    158812 4u56:e1 (3.45) BS01 rna ? GO:0003735 ... P05759 25209664
    158813 4u56:e1 (3.45) BS02 ZN ? GO:0003735 ... P05759 25209664
    158814 4u56:l2 (3.45) BS01 rna ? GO:0002181 ... P0CX45 25209664
    158815 4u56:l2 (3.45) BS02 rna ? GO:0002181 ... P0CX45 25209664
    158816 4u56:l3 (3.45) BS01 rna ? GO:0000027 ... P14126 25209664
    158817 4u56:l3 (3.45) BS02 MG ? GO:0000027 ... P14126 25209664
    158818 4u56:l3 (3.45) BS03 MG ? GO:0000027 ... P14126 25209664
    158819 4u56:l3 (3.45) BS04 OHX ? GO:0000027 ... P14126 25209664
    158820 4u56:l4 (3.45) BS01 rna ? GO:0002181 ... P10664 25209664
    158821 4u56:l4 (3.45) BS02 rna ? GO:0002181 ... P10664 25209664
    158822 4u56:l4 (3.45) BS03 OHX ? GO:0002181 ... P10664 25209664
    158823 4u56:l5 (3.45) BS01 rna ? GO:0000027 ... P26321 25209664
    158824 4u56:l5 (3.45) BS02 rna ? GO:0000027 ... P26321 25209664
    158825 4u56:l5 (3.45) BS03 OHX ? GO:0000027 ... P26321 25209664
    158826 4u56:l5 (3.45) BS04 OHX ? GO:0000027 ... P26321 25209664
    158827 4u56:l6 (3.45) BS01 rna ? GO:0000027 ... Q02326 25209664
    158828 4u56:l7 (3.45) BS01 rna ? GO:0000463 ... P05737 25209664
    158829 4u56:l7 (3.45) BS02 rna ? GO:0000463 ... P05737 25209664
    158830 4u56:l7 (3.45) BS03 OHX ? GO:0000463 ... P05737 25209664
    158831 4u56:l8 (3.45) BS01 rna ? GO:0000470 ... P17076 25209664
    158832 4u56:l8 (3.45) BS02 rna ? GO:0000470 ... P17076 25209664
    158833 4u56:l9 (3.45) BS01 rna ? GO:0002181 ... P05738 25209664
    158834 4u56:l9 (3.45) BS02 OHX ? GO:0002181 ... P05738 25209664
    158835 4u56:m0 (3.45) BS01 rna ? GO:0000027 ... P41805 25209664
    158836 4u56:m0 (3.45) BS02 rna ? GO:0000027 ... P41805 25209664
    158837 4u56:m0 (3.45) BS03 OHX ? GO:0000027 ... P41805 25209664
    158838 4u56:m0 (3.45) BS04 OHX ? GO:0000027 ... P41805 25209664
    158839 4u56:m0 (3.45) BS05 OHX ? GO:0000027 ... P41805 25209664
    158840 4u56:m1 (3.45) BS01 rna ? GO:0000027 ... Q3E757 25209664
    158841 4u56:m1 (3.45) BS02 rna ? GO:0000027 ... Q3E757 25209664
    158842 4u56:m1 (3.45) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    158843 4u56:m3 (3.45) BS01 rna ? GO:0002181 ... Q12690 25209664
    158844 4u56:m3 (3.45) BS02 rna ? GO:0002181 ... Q12690 25209664
    158845 4u56:m4 (3.45) BS01 rna ? GO:0000027 ... P36105 25209664
    158846 4u56:m4 (3.45) BS02 MG ? GO:0000027 ... P36105 25209664
    158847 4u56:m5 (3.45) BS01 rna ? GO:0002181 ... P05748 25209664
    158848 4u56:m5 (3.45) BS02 rna ? GO:0002181 ... P05748 25209664
    158849 4u56:m5 (3.45) BS03 MG ? GO:0002181 ... P05748 25209664
    158850 4u56:m6 (3.45) BS01 rna ? GO:0000470 ... P26784 25209664
    158851 4u56:m6 (3.45) BS02 MG ? GO:0000470 ... P26784 25209664
    158852 4u56:m7 (3.45) BS01 rna ? GO:0000448 ... P05740 25209664
    158853 4u56:m7 (3.45) BS02 rna ? GO:0000448 ... P05740 25209664
    158854 4u56:m8 (3.45) BS01 rna ? GO:0002181 ... P0CX49 25209664
    158855 4u56:m9 (3.45) BS01 rna ? GO:0002181 ... P0CX82 25209664
    158856 4u56:m9 (3.45) BS02 rna ? GO:0002181 ... P0CX82 25209664
    158857 4u56:m9 (3.45) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    158858 4u56:n0 (3.45) BS01 rna ? GO:0002181 ... P0CX23 25209664
    158859 4u56:n0 (3.45) BS02 rna ? GO:0002181 ... P0CX23 25209664
    158860 4u56:n1 (3.45) BS01 rna ? GO:0002181 ... Q02753 25209664
    158861 4u56:n1 (3.45) BS02 rna ? GO:0002181 ... Q02753 25209664
    158862 4u56:n1 (3.45) BS03 OHX ? GO:0002181 ... Q02753 25209664
    158863 4u56:n2 (3.45) BS01 rna ? GO:0002181 ... P05749 25209664
    158864 4u56:n3 (3.45) BS01 rna ? GO:0002181 ... P0CX41 25209664
    158865 4u56:n3 (3.45) BS02 rna ? GO:0002181 ... P0CX41 25209664
    158866 4u56:n3 (3.45) BS03 OHX ? GO:0002181 ... P0CX41 25209664
    158867 4u56:n4 (3.45) BS01 rna ? GO:0002181 ... P04449 25209664
    158868 4u56:n4 (3.45) BS02 rna ? GO:0002181 ... P04449 25209664
    158869 4u56:n5 (3.45) BS01 rna ? GO:0000027 ... P04456 25209664
    158870 4u56:n5 (3.45) BS02 rna ? GO:0000027 ... P04456 25209664
    158871 4u56:n6 (3.45) BS01 rna ? GO:0002181 ... P05743 25209664
    158872 4u56:n6 (3.45) BS02 rna ? GO:0002181 ... P05743 25209664
    158873 4u56:n7 (3.45) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    158874 4u56:n8 (3.45) BS01 rna ? GO:0002181 ... P02406 25209664
    158875 4u56:n9 (3.45) BS01 rna ? GO:0002181 ... P05747 25209664
    158876 4u56:n9 (3.45) BS02 OHX ? GO:0002181 ... P05747 25209664
    158877 4u56:o0 (3.45) BS01 rna ? GO:0002181 ... P14120 25209664
    158878 4u56:o0 (3.45) BS02 MG ? GO:0002181 ... P14120 25209664
    158879 4u56:o1 (3.45) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    158880 4u56:o2 (3.45) BS01 rna ? GO:0002181 ... P38061 25209664
    158881 4u56:o3 (3.45) BS01 rna ? GO:0000027 ... P05744 25209664
    158882 4u56:o3 (3.45) BS02 MG ? GO:0000027 ... P05744 25209664
    158883 4u56:o3 (3.45) BS03 OHX ? GO:0000027 ... P05744 25209664
    158884 4u56:o4 (3.45) BS01 rna ? GO:0002181 ... P87262 25209664
    158885 4u56:o5 (3.45) BS01 rna ? GO:0000463 ... P0CX84 25209664
    158886 4u56:o5 (3.45) BS02 rna ? GO:0000463 ... P0CX84 25209664
    158887 4u56:o6 (3.45) BS01 rna ? GO:0002181 ... P05745 25209664
    158888 4u56:o7 (3.45) BS01 rna ? GO:0000448 ... P49166 25209664
    158889 4u56:o7 (3.45) BS02 rna ? GO:0000448 ... P49166 25209664
    158890 4u56:o7 (3.45) BS03 ZN ? GO:0000448 ... P49166 25209664
    158891 4u56:o8 (3.45) BS01 rna ? GO:0002181 ... P49167 25209664
    158892 4u56:o9 (3.45) BS01 rna ? GO:0002181 ... P04650 25209664
    158893 4u56:o9 (3.45) BS02 rna ? GO:0002181 ... P04650 25209664
    158894 4u56:p0 (3.45) BS01 rna ? GO:0000027 ... P05317 25209664
    158895 4u56:q0 (3.45) BS01 rna ? GO:0003735 ... P0CH08 25209664
    158896 4u56:q0 (3.45) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    158897 4u56:q2 (3.45) BS01 rna ? GO:0002181 ... P0CX27 25209664
    158898 4u56:q2 (3.45) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    158899 4u56:q2 (3.45) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    158900 4u56:q3 (3.45) BS01 rna ? GO:0002181 ... P0CX25 25209664
    158901 4u56:q3 (3.45) BS02 rna ? GO:0002181 ... P0CX25 25209664
    158902 4u56:q3 (3.45) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    158903 4u56:s0 (3.45) BS01 rna ? GO:0000028 ... P32905 25209664
    158904 4u56:s1 (3.45) BS01 rna ? GO:0000462 ... P33442 25209664
    158905 4u56:s1 (3.45) BS02 rna ? GO:0000462 ... P33442 25209664
    158906 4u56:s1 (3.45) BS03 OHX ? GO:0000462 ... P33442 25209664
    158907 4u56:s2 (3.45) BS01 rna ? GO:0000054 ... P25443 25209664
    158908 4u56:s3 (3.45) BS01 rna ? GO:0000054 ... P05750 25209664
    158909 4u56:s4 (3.45) BS01 rna ? GO:0002181 ... P0CX35 25209664
    158910 4u56:s4 (3.45) BS02 MG ? GO:0002181 ... P0CX35 25209664
    158911 4u56:s4 (3.45) BS03 OHX ? GO:0002181 ... P0CX35 25209664
    158912 4u56:s5 (3.45) BS01 rna ? GO:0000028 ... P26783 25209664
    158913 4u56:s6 (3.45) BS01 rna ? GO:0000462 ... P0CX37 25209664
    158914 4u56:s7 (3.45) BS01 rna ? GO:0002181 ... P26786 25209664
    158915 4u56:s8 (3.45) BS01 rna ? GO:0000462 ... P0CX39 25209664
    158916 4u56:s8 (3.45) BS02 rna ? GO:0000462 ... P0CX39 25209664
    158917 4u56:s9 (3.45) BS01 rna ? GO:0000462 ... O13516 25209664
    158918 4u56:s9 (3.45) BS02 OHX ? GO:0000462 ... O13516 25209664
    158919 4u56:sM (3.45) BS01 rna ? GO:0000723 ... P39015 25209664
    158920 4u56:sM (3.45) BS02 rna ? GO:0000723 ... P39015 25209664
    158921 4u56:sM (3.45) BS03 MG ? GO:0000723 ... P39015 25209664
    158922 4u56:sR (3.45) BS01 rna ? GO:0001965 ... P38011 25209664
    158923 4u5b:A (3.5037) BS01 FWF ? GO:0000149 ... P19491 25103405
    158924 4u5b:B (3.5037) BS01 FWF ? GO:0000149 ... P19491 25103405
    158925 4u5b:C (3.5037) BS01 FWF ? GO:0000149 ... P19491 25103405
    158926 4u5b:D (3.5037) BS01 FWF ? GO:0000149 ... P19491 25103405
    158927 4u5c:A (3.6883) BS01 FWD ? GO:0000149 ... P19491 25103405 BindingDB: Ki=4nM, EC50=460nM
    158928 4u5c:A (3.6883) BS02 FWF ? GO:0000149 ... P19491 25103405
    158929 4u5c:B (3.6883) BS01 FWD ? GO:0000149 ... P19491 25103405 BindingDB: Ki=4nM, EC50=460nM
    158930 4u5c:B (3.6883) BS02 FWF ? GO:0000149 ... P19491 25103405
    158931 4u5c:C (3.6883) BS01 FWF ? GO:0000149 ... P19491 25103405
    158932 4u5c:C (3.6883) BS02 FWD ? GO:0000149 ... P19491 25103405 BindingDB: Ki=4nM, EC50=460nM
    158933 4u5c:D (3.6883) BS01 FWD ? GO:0000149 ... P19491 25103405 BindingDB: Ki=4nM, EC50=460nM
    158934 4u5c:D (3.6883) BS02 FWF ? GO:0000149 ... P19491 25103405
    158935 4u5d:A (3.5757) BS01 FWF ? GO:0000149 ... P19491 25103405
    158936 4u5d:B (3.5757) BS01 FWF ? GO:0000149 ... P19491 25103405
    158937 4u5d:C (3.5757) BS01 FWF ? GO:0000149 ... P19491 25103405
    158938 4u5d:D (3.5757) BS01 FWF ? GO:0000149 ... P19491 25103405
    158939 4u5e:A (3.5073) BS01 FWF ? GO:0000149 ... P19491 25103405
    158940 4u5e:B (3.5073) BS01 FWF ? GO:0000149 ... P19491 25103405
    158941 4u5e:C (3.5073) BS01 FWF ? GO:0000149 ... P19491 25103405
    158942 4u5e:D (3.5073) BS01 FWF ? GO:0000149 ... P19491 25103405
    158943 4u5f:A (3.7) BS01 FWF ? GO:0000149 ... P19491 25103405
    158944 4u5f:B (3.7) BS01 FWF ? GO:0000149 ... P19491 25103405
    158945 4u5f:C (3.7) BS01 FWF ? GO:0000149 ... P19491 25103405
    158946 4u5f:D (3.7) BS01 FWF ? GO:0000149 ... P19491 25103405
    158947 4u60:A (1.5) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158948 4u60:B (1.5) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158949 4u60:C (1.5) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158950 4u60:C (1.5) BS02 GAL ? GO:0005198 ... E2ESL7 26302170
    158951 4u60:D (1.5) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158952 4u60:E (1.5) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158953 4u61:A (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158954 4u61:B (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158955 4u61:C (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158956 4u61:E (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158957 4u61:H (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158958 4u61:I (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158959 4u61:J (1.65) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158960 4u62:B (1.55) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158961 4u62:C (1.55) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158962 4u62:J (1.55) BS01 SIA ? GO:0005198 ... E2ESL7 26302170
    158963 4u67:1 (3.65) BS01 rna ? GO:0000049 ... Q9RSS4 28689968
    158964 4u67:2 (3.65) BS01 rna ? GO:0003735 ... Q9RSH2 28689968
    158965 4u67:3 (3.65) BS01 rna ? GO:0003735 ... Q9RSW6 28689968
    158966 4u67:A (3.65) BS01 rna ? GO:0002181 ... Q9RXJ9 28689968
    158967 4u67:B (3.65) BS01 rna ? GO:0003735 ... Q9RXK2 28689968
    158968 4u67:C (3.65) BS01 rna ? GO:0003735 ... Q9RXK1 28689968
    158969 4u67:D (3.65) BS01 rna ? GO:0000049 ... Q9RXJ0 28689968
    158970 4u67:D (3.65) BS02 rna ? GO:0000049 ... Q9RXJ0 28689968
    158971 4u67:E (3.65) BS01 rna ? GO:0002181 ... Q9RSL3 28689968
    158972 4u67:G (3.65) BS01 rna ? GO:0003729 ... Q9RXY1 28689968
    158973 4u67:H (3.65) BS01 rna ? GO:0003735 ... Q9RXJ2 28689968
    158974 4u67:I (3.65) BS01 rna ? GO:0003735 ... Q9RSK9 28689968
    158975 4u67:J (3.65) BS01 rna ? GO:0000049 ... Q9RXJ5 28689968
    158976 4u67:J (3.65) BS02 rna ? GO:0000049 ... Q9RXJ5 28689968
    158977 4u67:K (3.65) BS01 rna ? GO:0003735 ... Q9RSJ5 28689968
    158978 4u67:L (3.65) BS01 rna ? GO:0003735 ... Q9RSL2 28689968
    158979 4u67:L (3.65) BS02 rna ? GO:0003735 ... Q9RSL2 28689968
    158980 4u67:M (3.65) BS01 rna ? GO:0003735 ... Q9RWB4 28689968
    158981 4u67:N (3.65) BS01 rna ? GO:0000027 ... Q9RSW7 28689968
    158982 4u67:O (3.65) BS01 rna ? GO:0003723 ... Q9RY64 28689968
    158983 4u67:P (3.65) BS01 rna ? GO:0003735 ... Q9RXJ7 28689968
    158984 4u67:Q (3.65) BS01 rna ? GO:0000027 ... Q9RXK0 28689968
    158985 4u67:R (3.65) BS01 rna ? GO:0003723 ... Q9RXJ1 28689968
    158986 4u67:S (3.65) BS01 rna ? GO:0000049 ... Q9RX88 28689968
    158987 4u67:S (3.65) BS02 rna ? GO:0000049 ... Q9RX88 28689968
    158988 4u67:T (3.65) BS01 rna ? GO:0000049 ... Q9RY65 28689968
    158989 4u67:U (3.65) BS01 rna ? GO:0003735 ... Q9RRG8 28689968
    158990 4u67:V (3.65) BS01 rna ? GO:0003735 ... Q9RXJ4 28689968
    158991 4u67:W (3.65) BS01 rna ? GO:0003735 ... Q9RSL0 28689968
    158992 4u67:W (3.65) BS02 rna ? GO:0003735 ... Q9RSL0 28689968
    158993 4u67:Z (3.65) BS01 rna ? GO:0003735 ... P49228 28689968
    158994 4u6f:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    158995 4u6f:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    158996 4u6f:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    158997 4u6f:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    158998 4u6f:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    158999 4u6f:C3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    159000 4u6f:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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