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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    158401 4u55:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    158402 4u55:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    158403 4u55:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    158404 4u55:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    158405 4u55:D9 (3.2) BS03 OHX ? GO:0002181 ... P41057 25209664
    158406 4u55:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    158407 4u55:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    158408 4u55:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    158409 4u55:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    158410 4u55:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    158411 4u55:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    158412 4u55:L2 (3.2) BS04 MG ? GO:0002181 ... P0CX45 25209664
    158413 4u55:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    158414 4u55:L3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    158415 4u55:L3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    158416 4u55:L3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    158417 4u55:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    158418 4u55:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    158419 4u55:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    158420 4u55:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    158421 4u55:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    158422 4u55:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    158423 4u55:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    158424 4u55:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    158425 4u55:L7 (3.2) BS03 OHX ? GO:0000463 ... P05737 25209664
    158426 4u55:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    158427 4u55:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    158428 4u55:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    158429 4u55:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    158430 4u55:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    158431 4u55:M0 (3.2) BS03 MG ? GO:0000027 ... P41805 25209664
    158432 4u55:M0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    158433 4u55:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    158434 4u55:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    158435 4u55:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    158436 4u55:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    158437 4u55:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    158438 4u55:M5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    158439 4u55:M5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    158440 4u55:M5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    158441 4u55:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    158442 4u55:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    158443 4u55:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    158444 4u55:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    158445 4u55:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    158446 4u55:M7 (3.2) BS05 OHX ? GO:0000448 ... P05740 25209664
    158447 4u55:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    158448 4u55:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    158449 4u55:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    158450 4u55:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    158451 4u55:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    158452 4u55:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    158453 4u55:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    158454 4u55:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    158455 4u55:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    158456 4u55:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    158457 4u55:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    158458 4u55:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    158459 4u55:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    158460 4u55:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    158461 4u55:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    158462 4u55:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    158463 4u55:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    158464 4u55:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    158465 4u55:N8 (3.2) BS02 MG ? GO:0002181 ... P02406 25209664
    158466 4u55:N8 (3.2) BS03 MG ? GO:0002181 ... P02406 25209664
    158467 4u55:N8 (3.2) BS04 MG ? GO:0002181 ... P02406 25209664
    158468 4u55:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    158469 4u55:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    158470 4u55:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    158471 4u55:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    158472 4u55:O1 (3.2) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    158473 4u55:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    158474 4u55:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    158475 4u55:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    158476 4u55:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    158477 4u55:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    158478 4u55:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    158479 4u55:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    158480 4u55:O6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    158481 4u55:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    158482 4u55:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    158483 4u55:O7 (3.2) BS03 ZN ? GO:0000448 ... P49166 25209664
    158484 4u55:O7 (3.2) BS04 OHX ? GO:0000448 ... P49166 25209664
    158485 4u55:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    158486 4u55:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    158487 4u55:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    158488 4u55:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    158489 4u55:Q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    158490 4u55:Q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    158491 4u55:Q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    158492 4u55:Q2 (3.2) BS02 OHX ? GO:0002181 ... P0CX27 25209664
    158493 4u55:Q2 (3.2) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    158494 4u55:Q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    158495 4u55:Q3 (3.2) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    158496 4u55:S0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    158497 4u55:S1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    158498 4u55:S2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    158499 4u55:S3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    158500 4u55:S4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    158501 4u55:S5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    158502 4u55:S6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    158503 4u55:S7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    158504 4u55:S8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    158505 4u55:S8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    158506 4u55:S8 (3.2) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    158507 4u55:S9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    158508 4u55:S9 (3.2) BS02 OHX ? GO:0000462 ... O13516 25209664
    158509 4u55:SM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    158510 4u55:SM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    158511 4u55:SM (3.2) BS03 MG ? GO:0000723 ... P39015 25209664
    158512 4u55:SR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    158513 4u55:SR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    158514 4u55:c0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    158515 4u55:c1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    158516 4u55:c2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    158517 4u55:c3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    158518 4u55:c3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    158519 4u55:c3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    158520 4u55:c4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    158521 4u55:c5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    158522 4u55:c5 (3.2) BS02 OHX ? GO:0000028 ... Q01855 25209664
    158523 4u55:c6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    158524 4u55:c7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    158525 4u55:c8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    158526 4u55:c9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    158527 4u55:c9 (3.2) BS02 MG ? GO:0000028 ... P07280 25209664
    158528 4u55:d0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    158529 4u55:d2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    158530 4u55:d3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    158531 4u55:d3 (3.2) BS02 MG ? GO:0000462 ... P0CX29 25209664
    158532 4u55:d4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    158533 4u55:d5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    158534 4u55:d6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    158535 4u55:d6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    158536 4u55:d6 (3.2) BS03 MG ? GO:0003735 ... P39939 25209664
    158537 4u55:d7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    158538 4u55:d8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    158539 4u55:d9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    158540 4u55:d9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    158541 4u55:e0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    158542 4u55:e1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    158543 4u55:e1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    158544 4u55:l2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    158545 4u55:l2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    158546 4u55:l2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    158547 4u55:l3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    158548 4u55:l3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    158549 4u55:l3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    158550 4u55:l3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    158551 4u55:l4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    158552 4u55:l4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    158553 4u55:l4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    158554 4u55:l4 (3.2) BS04 OHX ? GO:0002181 ... P10664 25209664
    158555 4u55:l5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    158556 4u55:l5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    158557 4u55:l5 (3.2) BS03 MG ? GO:0000027 ... P26321 25209664
    158558 4u55:l5 (3.2) BS04 OHX ? GO:0000027 ... P26321 25209664
    158559 4u55:l5 (3.2) BS05 OHX ? GO:0000027 ... P26321 25209664
    158560 4u55:l6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    158561 4u55:l7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    158562 4u55:l7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    158563 4u55:l7 (3.2) BS03 OHX ? GO:0000463 ... P05737 25209664
    158564 4u55:l8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    158565 4u55:l8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    158566 4u55:l9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    158567 4u55:l9 (3.2) BS02 OHX ? GO:0002181 ... P05738 25209664
    158568 4u55:m0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    158569 4u55:m0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    158570 4u55:m0 (3.2) BS03 OHX ? GO:0000027 ... P41805 25209664
    158571 4u55:m0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    158572 4u55:m1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    158573 4u55:m1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    158574 4u55:m1 (3.2) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    158575 4u55:m3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    158576 4u55:m3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    158577 4u55:m4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    158578 4u55:m5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    158579 4u55:m5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    158580 4u55:m5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    158581 4u55:m6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    158582 4u55:m6 (3.2) BS02 MG ? GO:0000470 ... P26784 25209664
    158583 4u55:m7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    158584 4u55:m7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    158585 4u55:m7 (3.2) BS03 OHX ? GO:0000448 ... P05740 25209664
    158586 4u55:m8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    158587 4u55:m9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    158588 4u55:m9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    158589 4u55:m9 (3.2) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    158590 4u55:n0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    158591 4u55:n0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    158592 4u55:n1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    158593 4u55:n1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    158594 4u55:n1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    158595 4u55:n2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    158596 4u55:n3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    158597 4u55:n3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    158598 4u55:n4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    158599 4u55:n4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    158600 4u55:n5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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