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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    158201 4u53:O3 (3.3) BS01 rna ? GO:0000027 ... P05744 25209664
    158202 4u53:O3 (3.3) BS02 OHX ? GO:0000027 ... P05744 25209664
    158203 4u53:O4 (3.3) BS01 rna ? GO:0002181 ... P87262 25209664
    158204 4u53:O5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 25209664
    158205 4u53:O5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 25209664
    158206 4u53:O6 (3.3) BS01 rna ? GO:0002181 ... P05745 25209664
    158207 4u53:O7 (3.3) BS01 rna ? GO:0000448 ... P49166 25209664
    158208 4u53:O7 (3.3) BS02 rna ? GO:0000448 ... P49166 25209664
    158209 4u53:O7 (3.3) BS03 OHX ? GO:0000448 ... P49166 25209664
    158210 4u53:O7 (3.3) BS04 OHX ? GO:0000448 ... P49166 25209664
    158211 4u53:O7 (3.3) BS05 ZN ? GO:0000448 ... P49166 25209664
    158212 4u53:O7 (3.3) BS06 OHX ? GO:0000448 ... P49166 25209664
    158213 4u53:O8 (3.3) BS01 rna ? GO:0002181 ... P49167 25209664
    158214 4u53:O9 (3.3) BS01 rna ? GO:0002181 ... P04650 25209664
    158215 4u53:O9 (3.3) BS02 rna ? GO:0002181 ... P04650 25209664
    158216 4u53:Q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 25209664
    158217 4u53:Q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    158218 4u53:Q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 25209664
    158219 4u53:Q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    158220 4u53:Q2 (3.3) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    158221 4u53:Q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 25209664
    158222 4u53:Q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    158223 4u53:S0 (3.3) BS01 rna ? GO:0000028 ... P32905 25209664
    158224 4u53:S1 (3.3) BS01 rna ? GO:0000462 ... P33442 25209664
    158225 4u53:S1 (3.3) BS02 OHX ? GO:0000462 ... P33442 25209664
    158226 4u53:S2 (3.3) BS01 rna ? GO:0000054 ... P25443 25209664
    158227 4u53:S3 (3.3) BS01 rna ? GO:0000054 ... P05750 25209664
    158228 4u53:S4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 25209664
    158229 4u53:S4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 25209664
    158230 4u53:S5 (3.3) BS01 rna ? GO:0000028 ... P26783 25209664
    158231 4u53:S6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 25209664
    158232 4u53:S7 (3.3) BS01 rna ? GO:0002181 ... P26786 25209664
    158233 4u53:S8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 25209664
    158234 4u53:S8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 25209664
    158235 4u53:S8 (3.3) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    158236 4u53:S9 (3.3) BS01 rna ? GO:0000462 ... O13516 25209664
    158237 4u53:SM (3.3) BS01 rna ? GO:0000723 ... P39015 25209664
    158238 4u53:SM (3.3) BS02 rna ? GO:0000723 ... P39015 25209664
    158239 4u53:SR (3.3) BS01 rna ? GO:0001965 ... P38011 25209664
    158240 4u53:SR (3.3) BS02 OHX ? GO:0001965 ... P38011 25209664
    158241 4u53:c0 (3.3) BS01 rna ? GO:0000054 ... Q08745 25209664
    158242 4u53:c1 (3.3) BS01 rna ? GO:0000028 ... P0CX47 25209664
    158243 4u53:c2 (3.3) BS01 rna ? GO:0000028 ... P48589 25209664
    158244 4u53:c3 (3.3) BS01 rna ? GO:0000462 ... P05756 25209664
    158245 4u53:c3 (3.3) BS02 rna ? GO:0000462 ... P05756 25209664
    158246 4u53:c4 (3.3) BS01 rna ? GO:0000028 ... P06367 25209664
    158247 4u53:c5 (3.3) BS01 rna ? GO:0000028 ... Q01855 25209664
    158248 4u53:c5 (3.3) BS02 OHX ? GO:0000028 ... Q01855 25209664
    158249 4u53:c6 (3.3) BS01 rna ? GO:0000462 ... P0CX51 25209664
    158250 4u53:c7 (3.3) BS01 rna ? GO:0000028 ... P02407 25209664
    158251 4u53:c8 (3.3) BS01 rna ? GO:0000054 ... P0CX55 25209664
    158252 4u53:c9 (3.3) BS01 rna ? GO:0000028 ... P07280 25209664
    158253 4u53:c9 (3.3) BS02 MG ? GO:0000028 ... P07280 25209664
    158254 4u53:d0 (3.3) BS01 rna ? GO:0000462 ... P38701 25209664
    158255 4u53:d2 (3.3) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    158256 4u53:d3 (3.3) BS01 rna ? GO:0000462 ... P0CX29 25209664
    158257 4u53:d3 (3.3) BS02 MG ? GO:0000462 ... P0CX29 25209664
    158258 4u53:d4 (3.3) BS01 rna ? GO:0000462 ... P0CX31 25209664
    158259 4u53:d5 (3.3) BS01 rna ? GO:0002181 ... Q3E792 25209664
    158260 4u53:d6 (3.3) BS01 rna ? GO:0003735 ... P39939 25209664
    158261 4u53:d6 (3.3) BS02 ZN ? GO:0003735 ... P39939 25209664
    158262 4u53:d7 (3.3) BS01 rna ? GO:0000028 ... P35997 25209664
    158263 4u53:d8 (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    158264 4u53:d9 (3.3) BS01 rna ? GO:0002181 ... P41057 25209664
    158265 4u53:d9 (3.3) BS02 ZN ? GO:0002181 ... P41057 25209664
    158266 4u53:e0 (3.3) BS01 rna ? GO:0002181 ... P0CX33 25209664
    158267 4u53:e1 (3.3) BS01 rna ? GO:0003735 ... P05759 25209664
    158268 4u53:l2 (3.3) BS01 rna ? GO:0002181 ... P0CX45 25209664
    158269 4u53:l2 (3.3) BS02 rna ? GO:0002181 ... P0CX45 25209664
    158270 4u53:l2 (3.3) BS03 MG ? GO:0002181 ... P0CX45 25209664
    158271 4u53:l3 (3.3) BS01 rna ? GO:0000027 ... P14126 25209664
    158272 4u53:l3 (3.3) BS02 MG ? GO:0000027 ... P14126 25209664
    158273 4u53:l3 (3.3) BS03 MG ? GO:0000027 ... P14126 25209664
    158274 4u53:l3 (3.3) BS04 OHX ? GO:0000027 ... P14126 25209664
    158275 4u53:l3 (3.3) BS05 OHX ? GO:0000027 ... P14126 25209664
    158276 4u53:l4 (3.3) BS01 rna ? GO:0002181 ... P10664 25209664
    158277 4u53:l4 (3.3) BS02 rna ? GO:0002181 ... P10664 25209664
    158278 4u53:l5 (3.3) BS01 rna ? GO:0000027 ... P26321 25209664
    158279 4u53:l5 (3.3) BS02 rna ? GO:0000027 ... P26321 25209664
    158280 4u53:l5 (3.3) BS03 MG ? GO:0000027 ... P26321 25209664
    158281 4u53:l5 (3.3) BS04 OHX ? GO:0000027 ... P26321 25209664
    158282 4u53:l5 (3.3) BS05 OHX ? GO:0000027 ... P26321 25209664
    158283 4u53:l5 (3.3) BS06 OHX ? GO:0000027 ... P26321 25209664
    158284 4u53:l6 (3.3) BS01 rna ? GO:0000027 ... Q02326 25209664
    158285 4u53:l7 (3.3) BS01 rna ? GO:0000463 ... P05737 25209664
    158286 4u53:l7 (3.3) BS02 rna ? GO:0000463 ... P05737 25209664
    158287 4u53:l7 (3.3) BS03 OHX ? GO:0000463 ... P05737 25209664
    158288 4u53:l8 (3.3) BS01 rna ? GO:0000470 ... P17076 25209664
    158289 4u53:l8 (3.3) BS02 rna ? GO:0000470 ... P17076 25209664
    158290 4u53:l9 (3.3) BS01 rna ? GO:0002181 ... P05738 25209664
    158291 4u53:l9 (3.3) BS02 OHX ? GO:0002181 ... P05738 25209664
    158292 4u53:m0 (3.3) BS01 rna ? GO:0000027 ... P41805 25209664
    158293 4u53:m0 (3.3) BS02 rna ? GO:0000027 ... P41805 25209664
    158294 4u53:m0 (3.3) BS03 OHX ? GO:0000027 ... P41805 25209664
    158295 4u53:m0 (3.3) BS04 OHX ? GO:0000027 ... P41805 25209664
    158296 4u53:m1 (3.3) BS01 rna ? GO:0000027 ... Q3E757 25209664
    158297 4u53:m1 (3.3) BS02 rna ? GO:0000027 ... Q3E757 25209664
    158298 4u53:m1 (3.3) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    158299 4u53:m3 (3.3) BS01 rna ? GO:0002181 ... Q12690 25209664
    158300 4u53:m3 (3.3) BS02 rna ? GO:0002181 ... Q12690 25209664
    158301 4u53:m4 (3.3) BS01 rna ? GO:0000027 ... P36105 25209664
    158302 4u53:m5 (3.3) BS01 rna ? GO:0002181 ... P05748 25209664
    158303 4u53:m5 (3.3) BS02 rna ? GO:0002181 ... P05748 25209664
    158304 4u53:m5 (3.3) BS03 OHX ? GO:0002181 ... P05748 25209664
    158305 4u53:m6 (3.3) BS01 rna ? GO:0000470 ... P26784 25209664
    158306 4u53:m6 (3.3) BS02 MG ? GO:0000470 ... P26784 25209664
    158307 4u53:m7 (3.3) BS01 rna ? GO:0000448 ... P05740 25209664
    158308 4u53:m7 (3.3) BS02 rna ? GO:0000448 ... P05740 25209664
    158309 4u53:m8 (3.3) BS01 rna ? GO:0002181 ... P0CX49 25209664
    158310 4u53:m9 (3.3) BS01 rna ? GO:0002181 ... P0CX82 25209664
    158311 4u53:m9 (3.3) BS02 rna ? GO:0002181 ... P0CX82 25209664
    158312 4u53:m9 (3.3) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    158313 4u53:n0 (3.3) BS01 rna ? GO:0002181 ... P0CX23 25209664
    158314 4u53:n0 (3.3) BS02 rna ? GO:0002181 ... P0CX23 25209664
    158315 4u53:n1 (3.3) BS01 rna ? GO:0002181 ... Q02753 25209664
    158316 4u53:n1 (3.3) BS02 rna ? GO:0002181 ... Q02753 25209664
    158317 4u53:n1 (3.3) BS03 OHX ? GO:0002181 ... Q02753 25209664
    158318 4u53:n2 (3.3) BS01 rna ? GO:0002181 ... P05749 25209664
    158319 4u53:n3 (3.3) BS01 rna ? GO:0002181 ... P0CX41 25209664
    158320 4u53:n3 (3.3) BS02 rna ? GO:0002181 ... P0CX41 25209664
    158321 4u53:n4 (3.3) BS01 rna ? GO:0002181 ... P04449 25209664
    158322 4u53:n4 (3.3) BS02 rna ? GO:0002181 ... P04449 25209664
    158323 4u53:n5 (3.3) BS01 rna ? GO:0000027 ... P04456 25209664
    158324 4u53:n5 (3.3) BS02 rna ? GO:0000027 ... P04456 25209664
    158325 4u53:n6 (3.3) BS01 rna ? GO:0002181 ... P05743 25209664
    158326 4u53:n6 (3.3) BS02 rna ? GO:0002181 ... P05743 25209664
    158327 4u53:n6 (3.3) BS03 OHX ? GO:0002181 ... P05743 25209664
    158328 4u53:n7 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    158329 4u53:n8 (3.3) BS01 rna ? GO:0002181 ... P02406 25209664
    158330 4u53:n8 (3.3) BS02 MG ? GO:0002181 ... P02406 25209664
    158331 4u53:n9 (3.3) BS01 rna ? GO:0002181 ... P05747 25209664
    158332 4u53:n9 (3.3) BS02 OHX ? GO:0002181 ... P05747 25209664
    158333 4u53:o0 (3.3) BS01 rna ? GO:0002181 ... P14120 25209664
    158334 4u53:o1 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    158335 4u53:o2 (3.3) BS01 rna ? GO:0002181 ... P38061 25209664
    158336 4u53:o3 (3.3) BS01 rna ? GO:0000027 ... P05744 25209664
    158337 4u53:o3 (3.3) BS02 MG ? GO:0000027 ... P05744 25209664
    158338 4u53:o3 (3.3) BS03 OHX ? GO:0000027 ... P05744 25209664
    158339 4u53:o4 (3.3) BS01 rna ? GO:0002181 ... P87262 25209664
    158340 4u53:o5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 25209664
    158341 4u53:o5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 25209664
    158342 4u53:o6 (3.3) BS01 rna ? GO:0002181 ... P05745 25209664
    158343 4u53:o7 (3.3) BS01 rna ? GO:0000448 ... P49166 25209664
    158344 4u53:o7 (3.3) BS02 rna ? GO:0000448 ... P49166 25209664
    158345 4u53:o7 (3.3) BS03 OHX ? GO:0000448 ... P49166 25209664
    158346 4u53:o7 (3.3) BS04 ZN ? GO:0000448 ... P49166 25209664
    158347 4u53:o7 (3.3) BS05 OHX ? GO:0000448 ... P49166 25209664
    158348 4u53:o7 (3.3) BS06 OHX ? GO:0000448 ... P49166 25209664
    158349 4u53:o8 (3.3) BS01 rna ? GO:0002181 ... P49167 25209664
    158350 4u53:o9 (3.3) BS01 rna ? GO:0002181 ... P04650 25209664
    158351 4u53:o9 (3.3) BS02 rna ? GO:0002181 ... P04650 25209664
    158352 4u53:p0 (3.3) BS01 rna ? GO:0000027 ... P05317 25209664
    158353 4u53:q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 25209664
    158354 4u53:q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    158355 4u53:q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 25209664
    158356 4u53:q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    158357 4u53:q2 (3.3) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    158358 4u53:q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 25209664
    158359 4u53:q3 (3.3) BS02 rna ? GO:0002181 ... P0CX25 25209664
    158360 4u53:q3 (3.3) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    158361 4u53:s0 (3.3) BS01 rna ? GO:0000028 ... P32905 25209664
    158362 4u53:s1 (3.3) BS01 rna ? GO:0000462 ... P33442 25209664
    158363 4u53:s1 (3.3) BS02 OHX ? GO:0000462 ... P33442 25209664
    158364 4u53:s2 (3.3) BS01 rna ? GO:0000054 ... P25443 25209664
    158365 4u53:s3 (3.3) BS01 rna ? GO:0000054 ... P05750 25209664
    158366 4u53:s4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 25209664
    158367 4u53:s4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 25209664
    158368 4u53:s5 (3.3) BS01 rna ? GO:0000028 ... P26783 25209664
    158369 4u53:s6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 25209664
    158370 4u53:s7 (3.3) BS01 rna ? GO:0002181 ... P26786 25209664
    158371 4u53:s8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 25209664
    158372 4u53:s8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 25209664
    158373 4u53:s9 (3.3) BS01 rna ? GO:0000462 ... O13516 25209664
    158374 4u53:sM (3.3) BS01 rna ? GO:0000723 ... P39015 25209664
    158375 4u53:sM (3.3) BS02 rna ? GO:0000723 ... P39015 25209664
    158376 4u53:sM (3.3) BS03 MG ? GO:0000723 ... P39015 25209664
    158377 4u53:sR (3.3) BS01 rna ? GO:0001965 ... P38011 25209664
    158378 4u53:sR (3.3) BS02 OHX ? GO:0001965 ... P38011 25209664
    158379 4u55:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    158380 4u55:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    158381 4u55:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    158382 4u55:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    158383 4u55:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    158384 4u55:C3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    158385 4u55:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    158386 4u55:C5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    158387 4u55:C5 (3.2) BS02 rna ? GO:0000028 ... Q01855 25209664
    158388 4u55:C5 (3.2) BS03 OHX ? GO:0000028 ... Q01855 25209664
    158389 4u55:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    158390 4u55:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    158391 4u55:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    158392 4u55:C8 (3.2) BS02 MG ? GO:0000054 ... P0CX55 25209664
    158393 4u55:C9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    158394 4u55:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    158395 4u55:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    158396 4u55:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    158397 4u55:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    158398 4u55:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    158399 4u55:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    158400 4u55:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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