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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157801 4u51:q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157802 4u51:q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157803 4u51:q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    157804 4u51:q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157805 4u51:q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157806 4u51:q3 (3.2) BS02 rna ? GO:0002181 ... P0CX25 25209664
    157807 4u51:q3 (3.2) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    157808 4u51:s0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    157809 4u51:s1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    157810 4u51:s1 (3.2) BS02 OHX ? GO:0000462 ... P33442 25209664
    157811 4u51:s2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    157812 4u51:s3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    157813 4u51:s4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157814 4u51:s4 (3.2) BS02 MG ? GO:0002181 ... P0CX35 25209664
    157815 4u51:s5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    157816 4u51:s6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157817 4u51:s7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    157818 4u51:s8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157819 4u51:s8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157820 4u51:s9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    157821 4u51:sM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    157822 4u51:sM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    157823 4u51:sM (3.2) BS03 MG ? GO:0000723 ... P39015 25209664
    157824 4u51:sR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    157825 4u51:sR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    157826 4u52:C0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    157827 4u52:C1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157828 4u52:C2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    157829 4u52:C3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    157830 4u52:C3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    157831 4u52:C3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    157832 4u52:C4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    157833 4u52:C5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    157834 4u52:C5 (3.0) BS02 rna ? GO:0000028 ... Q01855 25209664
    157835 4u52:C5 (3.0) BS03 OHX ? GO:0000028 ... Q01855 25209664
    157836 4u52:C6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157837 4u52:C7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    157838 4u52:C8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157839 4u52:C8 (3.0) BS02 MG ? GO:0000054 ... P0CX55 25209664
    157840 4u52:C8 (3.0) BS03 OHX ? GO:0000054 ... P0CX55 25209664
    157841 4u52:C9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    157842 4u52:D0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    157843 4u52:D2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157844 4u52:D3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157845 4u52:D4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157846 4u52:D5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157847 4u52:D6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    157848 4u52:D6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    157849 4u52:D7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    157850 4u52:D8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157851 4u52:D9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    157852 4u52:D9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    157853 4u52:D9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    157854 4u52:E0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157855 4u52:E1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    157856 4u52:E1 (3.0) BS02 ZN ? GO:0003735 ... P05759 25209664
    157857 4u52:L2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157858 4u52:L2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157859 4u52:L2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157860 4u52:L3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    157861 4u52:L3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    157862 4u52:L3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    157863 4u52:L3 (3.0) BS04 OHX ? GO:0000027 ... P14126 25209664
    157864 4u52:L4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    157865 4u52:L4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    157866 4u52:L4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    157867 4u52:L5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    157868 4u52:L5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    157869 4u52:L5 (3.0) BS03 MG ? GO:0000027 ... P26321 25209664
    157870 4u52:L6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    157871 4u52:L7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    157872 4u52:L7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    157873 4u52:L8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    157874 4u52:L8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    157875 4u52:L9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    157876 4u52:M0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    157877 4u52:M0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    157878 4u52:M0 (3.0) BS03 MG ? GO:0000027 ... P41805 25209664
    157879 4u52:M1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157880 4u52:M1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157881 4u52:M3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    157882 4u52:M3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    157883 4u52:M4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    157884 4u52:M5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    157885 4u52:M5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    157886 4u52:M5 (3.0) BS03 MG ? GO:0002181 ... P05748 25209664
    157887 4u52:M5 (3.0) BS04 OHX ? GO:0002181 ... P05748 25209664
    157888 4u52:M6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    157889 4u52:M7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    157890 4u52:M7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    157891 4u52:M7 (3.0) BS03 MG ? GO:0000448 ... P05740 25209664
    157892 4u52:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    157893 4u52:M7 (3.0) BS05 OHX ? GO:0000448 ... P05740 25209664
    157894 4u52:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157895 4u52:M8 (3.0) BS02 OHX ? GO:0002181 ... P0CX49 25209664
    157896 4u52:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157897 4u52:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157898 4u52:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    157899 4u52:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157900 4u52:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157901 4u52:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    157902 4u52:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    157903 4u52:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157904 4u52:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    157905 4u52:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157906 4u52:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157907 4u52:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    157908 4u52:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    157909 4u52:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    157910 4u52:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    157911 4u52:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    157912 4u52:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    157913 4u52:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157914 4u52:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    157915 4u52:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    157916 4u52:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    157917 4u52:N8 (3.0) BS04 MG ? GO:0002181 ... P02406 25209664
    157918 4u52:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    157919 4u52:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    157920 4u52:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    157921 4u52:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157922 4u52:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    157923 4u52:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    157924 4u52:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    157925 4u52:O4 (3.0) BS01 rna ? GO:0003735 ... P87262 25209664
    157926 4u52:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157927 4u52:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157928 4u52:O6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    157929 4u52:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    157930 4u52:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    157931 4u52:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    157932 4u52:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    157933 4u52:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    157934 4u52:O7 (3.0) BS06 OHX ? GO:0000448 ... P49166 25209664
    157935 4u52:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    157936 4u52:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    157937 4u52:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    157938 4u52:O9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    157939 4u52:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157940 4u52:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157941 4u52:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157942 4u52:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    157943 4u52:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157944 4u52:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157945 4u52:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    157946 4u52:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    157947 4u52:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    157948 4u52:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    157949 4u52:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    157950 4u52:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157951 4u52:S5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    157952 4u52:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157953 4u52:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    157954 4u52:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157955 4u52:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157956 4u52:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    157957 4u52:S9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    157958 4u52:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    157959 4u52:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    157960 4u52:SM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    157961 4u52:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    157962 4u52:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    157963 4u52:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    157964 4u52:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157965 4u52:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    157966 4u52:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    157967 4u52:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    157968 4u52:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    157969 4u52:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    157970 4u52:c5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    157971 4u52:c5 (3.0) BS02 OHX ? GO:0000028 ... Q01855 25209664
    157972 4u52:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157973 4u52:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    157974 4u52:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157975 4u52:c9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    157976 4u52:c9 (3.0) BS02 MG ? GO:0000028 ... P07280 25209664
    157977 4u52:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    157978 4u52:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157979 4u52:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157980 4u52:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    157981 4u52:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157982 4u52:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157983 4u52:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    157984 4u52:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    157985 4u52:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    157986 4u52:d7 (3.0) BS02 ZN ? GO:0000028 ... P35997 25209664
    157987 4u52:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157988 4u52:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    157989 4u52:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    157990 4u52:d9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    157991 4u52:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157992 4u52:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    157993 4u52:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157994 4u52:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157995 4u52:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    157996 4u52:l3 (3.0) BS02 OHX ? GO:0000027 ... P14126 25209664
    157997 4u52:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    157998 4u52:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    157999 4u52:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    158000 4u52:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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