Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157601 4u51:L5 (3.2) BS03 MG ? GO:0000027 ... P26321 25209664
    157602 4u51:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    157603 4u51:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    157604 4u51:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    157605 4u51:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    157606 4u51:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    157607 4u51:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    157608 4u51:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    157609 4u51:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    157610 4u51:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157611 4u51:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157612 4u51:M1 (3.2) BS03 MG ? GO:0000027 ... Q3E757 25209664
    157613 4u51:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    157614 4u51:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    157615 4u51:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    157616 4u51:M5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    157617 4u51:M5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    157618 4u51:M5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    157619 4u51:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    157620 4u51:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    157621 4u51:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    157622 4u51:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    157623 4u51:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    157624 4u51:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157625 4u51:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157626 4u51:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157627 4u51:M9 (3.2) BS03 MG ? GO:0002181 ... P0CX82 25209664
    157628 4u51:M9 (3.2) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    157629 4u51:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157630 4u51:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157631 4u51:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    157632 4u51:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    157633 4u51:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157634 4u51:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    157635 4u51:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157636 4u51:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157637 4u51:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    157638 4u51:N4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    157639 4u51:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    157640 4u51:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    157641 4u51:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    157642 4u51:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    157643 4u51:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157644 4u51:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    157645 4u51:N8 (3.2) BS02 MG ? GO:0002181 ... P02406 25209664
    157646 4u51:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    157647 4u51:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    157648 4u51:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    157649 4u51:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157650 4u51:O1 (3.2) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    157651 4u51:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    157652 4u51:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    157653 4u51:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    157654 4u51:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    157655 4u51:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    157656 4u51:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157657 4u51:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157658 4u51:O6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    157659 4u51:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    157660 4u51:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    157661 4u51:O7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    157662 4u51:O7 (3.2) BS04 ZN ? GO:0000448 ... P49166 25209664
    157663 4u51:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    157664 4u51:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    157665 4u51:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    157666 4u51:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    157667 4u51:Q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157668 4u51:Q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157669 4u51:Q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157670 4u51:Q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    157671 4u51:Q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157672 4u51:Q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157673 4u51:Q3 (3.2) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    157674 4u51:S0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    157675 4u51:S1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    157676 4u51:S1 (3.2) BS02 OHX ? GO:0000462 ... P33442 25209664
    157677 4u51:S2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    157678 4u51:S3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    157679 4u51:S4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157680 4u51:S4 (3.2) BS02 MG ? GO:0002181 ... P0CX35 25209664
    157681 4u51:S5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    157682 4u51:S6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157683 4u51:S7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    157684 4u51:S8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157685 4u51:S8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157686 4u51:S8 (3.2) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    157687 4u51:S9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    157688 4u51:SM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    157689 4u51:SM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    157690 4u51:SR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    157691 4u51:SR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    157692 4u51:c0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    157693 4u51:c1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157694 4u51:c2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    157695 4u51:c3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    157696 4u51:c3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    157697 4u51:c3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    157698 4u51:c4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    157699 4u51:c5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    157700 4u51:c5 (3.2) BS02 OHX ? GO:0000028 ... Q01855 25209664
    157701 4u51:c6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157702 4u51:c7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    157703 4u51:c8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157704 4u51:c9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    157705 4u51:c9 (3.2) BS02 MG ? GO:0000028 ... P07280 25209664
    157706 4u51:d0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    157707 4u51:d2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157708 4u51:d3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157709 4u51:d4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157710 4u51:d5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157711 4u51:d6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    157712 4u51:d6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    157713 4u51:d6 (3.2) BS03 MG ? GO:0003735 ... P39939 25209664
    157714 4u51:d7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    157715 4u51:d8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157716 4u51:d9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    157717 4u51:d9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    157718 4u51:e0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157719 4u51:e1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    157720 4u51:l2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157721 4u51:l2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157722 4u51:l2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157723 4u51:l3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    157724 4u51:l3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    157725 4u51:l3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    157726 4u51:l4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    157727 4u51:l4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    157728 4u51:l5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    157729 4u51:l5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    157730 4u51:l5 (3.2) BS03 MG ? GO:0000027 ... P26321 25209664
    157731 4u51:l5 (3.2) BS04 OHX ? GO:0000027 ... P26321 25209664
    157732 4u51:l5 (3.2) BS05 OHX ? GO:0000027 ... P26321 25209664
    157733 4u51:l6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    157734 4u51:l7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    157735 4u51:l7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    157736 4u51:l7 (3.2) BS03 OHX ? GO:0000463 ... P05737 25209664
    157737 4u51:l8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    157738 4u51:l8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    157739 4u51:l9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    157740 4u51:m0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    157741 4u51:m0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    157742 4u51:m0 (3.2) BS03 OHX ? GO:0000027 ... P41805 25209664
    157743 4u51:m0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    157744 4u51:m1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157745 4u51:m1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157746 4u51:m3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    157747 4u51:m3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    157748 4u51:m4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    157749 4u51:m5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    157750 4u51:m5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    157751 4u51:m5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    157752 4u51:m6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    157753 4u51:m6 (3.2) BS02 MG ? GO:0000470 ... P26784 25209664
    157754 4u51:m7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    157755 4u51:m7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    157756 4u51:m7 (3.2) BS03 OHX ? GO:0000448 ... P05740 25209664
    157757 4u51:m8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157758 4u51:m9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157759 4u51:m9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157760 4u51:m9 (3.2) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    157761 4u51:n0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157762 4u51:n0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157763 4u51:n1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    157764 4u51:n1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    157765 4u51:n1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157766 4u51:n2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    157767 4u51:n3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157768 4u51:n3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157769 4u51:n3 (3.2) BS03 MG ? GO:0002181 ... P0CX41 25209664
    157770 4u51:n4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    157771 4u51:n4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    157772 4u51:n5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    157773 4u51:n5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    157774 4u51:n6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    157775 4u51:n6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    157776 4u51:n7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157777 4u51:n8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    157778 4u51:n8 (3.2) BS02 OHX ? GO:0002181 ... P02406 25209664
    157779 4u51:n9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    157780 4u51:n9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    157781 4u51:o0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    157782 4u51:o1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157783 4u51:o2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    157784 4u51:o3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    157785 4u51:o3 (3.2) BS02 MG ? GO:0000027 ... P05744 25209664
    157786 4u51:o3 (3.2) BS03 OHX ? GO:0000027 ... P05744 25209664
    157787 4u51:o4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    157788 4u51:o5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157789 4u51:o5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157790 4u51:o6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    157791 4u51:o7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    157792 4u51:o7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    157793 4u51:o7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    157794 4u51:o7 (3.2) BS04 OHX ? GO:0000448 ... P49166 25209664
    157795 4u51:o7 (3.2) BS05 ZN ? GO:0000448 ... P49166 25209664
    157796 4u51:o8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    157797 4u51:o9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    157798 4u51:o9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    157799 4u51:p0 (3.2) BS01 rna ? GO:0000027 ... P05317 25209664
    157800 4u51:q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417