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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157401 4u50:Q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    157402 4u50:Q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157403 4u50:Q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157404 4u50:Q3 (3.2) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    157405 4u50:S0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    157406 4u50:S1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    157407 4u50:S1 (3.2) BS02 OHX ? GO:0000462 ... P33442 25209664
    157408 4u50:S2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    157409 4u50:S3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    157410 4u50:S4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157411 4u50:S5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    157412 4u50:S6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157413 4u50:S7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    157414 4u50:S8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157415 4u50:S8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157416 4u50:S9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    157417 4u50:SM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    157418 4u50:SM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    157419 4u50:SR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    157420 4u50:SR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    157421 4u50:c0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    157422 4u50:c1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157423 4u50:c2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    157424 4u50:c3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    157425 4u50:c3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    157426 4u50:c4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    157427 4u50:c5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    157428 4u50:c5 (3.2) BS02 OHX ? GO:0000028 ... Q01855 25209664
    157429 4u50:c6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157430 4u50:c7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    157431 4u50:c8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157432 4u50:c9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    157433 4u50:c9 (3.2) BS02 MG ? GO:0000028 ... P07280 25209664
    157434 4u50:d0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    157435 4u50:d1 (3.2) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    157436 4u50:d2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157437 4u50:d3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157438 4u50:d3 (3.2) BS02 MG ? GO:0000462 ... P0CX29 25209664
    157439 4u50:d4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157440 4u50:d5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157441 4u50:d6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    157442 4u50:d6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    157443 4u50:d7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    157444 4u50:d8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157445 4u50:d9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    157446 4u50:d9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    157447 4u50:e0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157448 4u50:e1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    157449 4u50:l2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157450 4u50:l2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157451 4u50:l2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157452 4u50:l3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    157453 4u50:l3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    157454 4u50:l3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    157455 4u50:l3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    157456 4u50:l4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    157457 4u50:l4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    157458 4u50:l4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    157459 4u50:l5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    157460 4u50:l5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    157461 4u50:l5 (3.2) BS03 OHX ? GO:0000027 ... P26321 25209664
    157462 4u50:l5 (3.2) BS04 OHX ? GO:0000027 ... P26321 25209664
    157463 4u50:l6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    157464 4u50:l7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    157465 4u50:l7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    157466 4u50:l7 (3.2) BS03 OHX ? GO:0000463 ... P05737 25209664
    157467 4u50:l8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    157468 4u50:l8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    157469 4u50:l9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    157470 4u50:l9 (3.2) BS02 OHX ? GO:0002181 ... P05738 25209664
    157471 4u50:m0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    157472 4u50:m0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    157473 4u50:m0 (3.2) BS03 OHX ? GO:0000027 ... P41805 25209664
    157474 4u50:m0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    157475 4u50:m1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157476 4u50:m1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157477 4u50:m1 (3.2) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    157478 4u50:m3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    157479 4u50:m3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    157480 4u50:m4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    157481 4u50:m5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    157482 4u50:m5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    157483 4u50:m5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    157484 4u50:m6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    157485 4u50:m6 (3.2) BS02 MG ? GO:0000470 ... P26784 25209664
    157486 4u50:m7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    157487 4u50:m7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    157488 4u50:m7 (3.2) BS03 OHX ? GO:0000448 ... P05740 25209664
    157489 4u50:m8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157490 4u50:m9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157491 4u50:m9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157492 4u50:n0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157493 4u50:n0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157494 4u50:n1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    157495 4u50:n1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    157496 4u50:n1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157497 4u50:n2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    157498 4u50:n3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157499 4u50:n3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157500 4u50:n3 (3.2) BS03 MG ? GO:0002181 ... P0CX41 25209664
    157501 4u50:n4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    157502 4u50:n4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    157503 4u50:n5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    157504 4u50:n5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    157505 4u50:n6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    157506 4u50:n6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    157507 4u50:n6 (3.2) BS03 OHX ? GO:0002181 ... P05743 25209664
    157508 4u50:n7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157509 4u50:n7 (3.2) BS02 OHX ? GO:0002181 ... P0C2H6 25209664
    157510 4u50:n8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    157511 4u50:n8 (3.2) BS02 OHX ? GO:0002181 ... P02406 25209664
    157512 4u50:n9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    157513 4u50:n9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    157514 4u50:o0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    157515 4u50:o1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157516 4u50:o2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    157517 4u50:o2 (3.2) BS02 OHX ? GO:0002181 ... P38061 25209664
    157518 4u50:o3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    157519 4u50:o3 (3.2) BS02 MG ? GO:0000027 ... P05744 25209664
    157520 4u50:o3 (3.2) BS03 OHX ? GO:0000027 ... P05744 25209664
    157521 4u50:o4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    157522 4u50:o4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    157523 4u50:o5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157524 4u50:o5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157525 4u50:o6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    157526 4u50:o7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    157527 4u50:o7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    157528 4u50:o7 (3.2) BS03 ZN ? GO:0000448 ... P49166 25209664
    157529 4u50:o7 (3.2) BS04 OHX ? GO:0000448 ... P49166 25209664
    157530 4u50:o7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    157531 4u50:o8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    157532 4u50:o9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    157533 4u50:o9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    157534 4u50:p0 (3.2) BS01 rna ? GO:0000027 ... P05317 25209664
    157535 4u50:q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157536 4u50:q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157537 4u50:q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157538 4u50:q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    157539 4u50:q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157540 4u50:q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157541 4u50:q3 (3.2) BS02 rna ? GO:0002181 ... P0CX25 25209664
    157542 4u50:q3 (3.2) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    157543 4u50:s0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    157544 4u50:s1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    157545 4u50:s1 (3.2) BS02 OHX ? GO:0000462 ... P33442 25209664
    157546 4u50:s2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    157547 4u50:s3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    157548 4u50:s4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157549 4u50:s4 (3.2) BS02 MG ? GO:0002181 ... P0CX35 25209664
    157550 4u50:s5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    157551 4u50:s6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157552 4u50:s7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    157553 4u50:s8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157554 4u50:s8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157555 4u50:s9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    157556 4u50:sM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    157557 4u50:sM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    157558 4u50:sR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    157559 4u51:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    157560 4u51:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157561 4u51:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    157562 4u51:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    157563 4u51:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    157564 4u51:C3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    157565 4u51:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    157566 4u51:C5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    157567 4u51:C5 (3.2) BS02 rna ? GO:0000028 ... Q01855 25209664
    157568 4u51:C5 (3.2) BS03 OHX ? GO:0000028 ... Q01855 25209664
    157569 4u51:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157570 4u51:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    157571 4u51:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157572 4u51:C8 (3.2) BS02 MG ? GO:0000054 ... P0CX55 25209664
    157573 4u51:C8 (3.2) BS03 MG ? GO:0000054 ... P0CX55 25209664
    157574 4u51:C8 (3.2) BS04 OHX ? GO:0000054 ... P0CX55 25209664
    157575 4u51:C9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    157576 4u51:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    157577 4u51:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157578 4u51:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157579 4u51:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157580 4u51:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157581 4u51:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    157582 4u51:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    157583 4u51:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    157584 4u51:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157585 4u51:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    157586 4u51:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    157587 4u51:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157588 4u51:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    157589 4u51:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    157590 4u51:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157591 4u51:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157592 4u51:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157593 4u51:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    157594 4u51:L3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    157595 4u51:L3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    157596 4u51:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    157597 4u51:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    157598 4u51:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    157599 4u51:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    157600 4u51:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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