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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157201 4u4z:l9 (3.1) BS02 OHX ? GO:0002181 ... P05738 25209664
    157202 4u4z:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    157203 4u4z:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    157204 4u4z:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 25209664
    157205 4u4z:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 25209664
    157206 4u4z:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157207 4u4z:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157208 4u4z:m1 (3.1) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    157209 4u4z:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    157210 4u4z:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    157211 4u4z:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    157212 4u4z:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    157213 4u4z:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    157214 4u4z:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    157215 4u4z:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    157216 4u4z:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 25209664
    157217 4u4z:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    157218 4u4z:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    157219 4u4z:m7 (3.1) BS03 OHX ? GO:0000448 ... P05740 25209664
    157220 4u4z:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157221 4u4z:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157222 4u4z:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157223 4u4z:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157224 4u4z:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157225 4u4z:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    157226 4u4z:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    157227 4u4z:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157228 4u4z:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    157229 4u4z:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157230 4u4z:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157231 4u4z:n3 (3.1) BS03 MG ? GO:0002181 ... P0CX41 25209664
    157232 4u4z:n3 (3.1) BS04 OHX ? GO:0002181 ... P0CX41 25209664
    157233 4u4z:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    157234 4u4z:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    157235 4u4z:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    157236 4u4z:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    157237 4u4z:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    157238 4u4z:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    157239 4u4z:n6 (3.1) BS03 OHX ? GO:0002181 ... P05743 25209664
    157240 4u4z:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157241 4u4z:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    157242 4u4z:n8 (3.1) BS02 OHX ? GO:0002181 ... P02406 25209664
    157243 4u4z:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    157244 4u4z:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    157245 4u4z:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    157246 4u4z:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157247 4u4z:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    157248 4u4z:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    157249 4u4z:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 25209664
    157250 4u4z:o3 (3.1) BS03 OHX ? GO:0000027 ... P05744 25209664
    157251 4u4z:o4 (3.1) BS01 rna ? GO:0003735 ... P87262 25209664
    157252 4u4z:o4 (3.1) BS02 MG ? GO:0003735 ... P87262 25209664
    157253 4u4z:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157254 4u4z:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157255 4u4z:o6 (3.1) BS01 rna ? GO:0002181 ... P05745 25209664
    157256 4u4z:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    157257 4u4z:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    157258 4u4z:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 25209664
    157259 4u4z:o7 (3.1) BS04 OHX ? GO:0000448 ... P49166 25209664
    157260 4u4z:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    157261 4u4z:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    157262 4u4z:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    157263 4u4z:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 25209664
    157264 4u4z:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157265 4u4z:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157266 4u4z:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157267 4u4z:q2 (3.1) BS02 3K5 ? GO:0002181 ... P0CX27 25209664
    157268 4u4z:q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    157269 4u4z:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157270 4u4z:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 25209664
    157271 4u4z:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    157272 4u4z:s0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    157273 4u4z:s1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    157274 4u4z:s1 (3.1) BS02 OHX ? GO:0000462 ... P33442 25209664
    157275 4u4z:s1 (3.1) BS03 OHX ? GO:0000462 ... P33442 25209664
    157276 4u4z:s2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    157277 4u4z:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    157278 4u4z:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157279 4u4z:s4 (3.1) BS02 MG ? GO:0002181 ... P0CX35 25209664
    157280 4u4z:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 25209664
    157281 4u4z:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157282 4u4z:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    157283 4u4z:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157284 4u4z:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157285 4u4z:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    157286 4u4z:sM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    157287 4u4z:sM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    157288 4u4z:sM (3.1) BS03 MG ? GO:0000723 ... P39015 25209664
    157289 4u4z:sR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    157290 4u4z:sR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    157291 4u50:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    157292 4u50:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157293 4u50:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    157294 4u50:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    157295 4u50:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    157296 4u50:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    157297 4u50:C5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    157298 4u50:C5 (3.2) BS02 rna ? GO:0000028 ... Q01855 25209664
    157299 4u50:C5 (3.2) BS03 OHX ? GO:0000028 ... Q01855 25209664
    157300 4u50:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157301 4u50:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    157302 4u50:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157303 4u50:C8 (3.2) BS02 MG ? GO:0000054 ... P0CX55 25209664
    157304 4u50:C9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    157305 4u50:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    157306 4u50:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157307 4u50:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157308 4u50:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157309 4u50:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157310 4u50:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    157311 4u50:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    157312 4u50:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    157313 4u50:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157314 4u50:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    157315 4u50:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    157316 4u50:D9 (3.2) BS03 OHX ? GO:0002181 ... P41057 25209664
    157317 4u50:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157318 4u50:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    157319 4u50:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    157320 4u50:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157321 4u50:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157322 4u50:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157323 4u50:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    157324 4u50:L3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    157325 4u50:L3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    157326 4u50:L3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    157327 4u50:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    157328 4u50:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    157329 4u50:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    157330 4u50:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    157331 4u50:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    157332 4u50:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    157333 4u50:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    157334 4u50:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    157335 4u50:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    157336 4u50:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    157337 4u50:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    157338 4u50:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    157339 4u50:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    157340 4u50:M0 (3.2) BS03 MG ? GO:0000027 ... P41805 25209664
    157341 4u50:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157342 4u50:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157343 4u50:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    157344 4u50:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    157345 4u50:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    157346 4u50:M5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    157347 4u50:M5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    157348 4u50:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    157349 4u50:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    157350 4u50:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    157351 4u50:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    157352 4u50:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    157353 4u50:M7 (3.2) BS05 OHX ? GO:0000448 ... P05740 25209664
    157354 4u50:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157355 4u50:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157356 4u50:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157357 4u50:M9 (3.2) BS03 MG ? GO:0002181 ... P0CX82 25209664
    157358 4u50:M9 (3.2) BS04 MG ? GO:0002181 ... P0CX82 25209664
    157359 4u50:M9 (3.2) BS05 OHX ? GO:0002181 ... P0CX82 25209664
    157360 4u50:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157361 4u50:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157362 4u50:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    157363 4u50:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    157364 4u50:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157365 4u50:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    157366 4u50:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157367 4u50:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157368 4u50:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    157369 4u50:N4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    157370 4u50:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    157371 4u50:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    157372 4u50:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    157373 4u50:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    157374 4u50:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157375 4u50:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    157376 4u50:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    157377 4u50:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    157378 4u50:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    157379 4u50:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157380 4u50:O1 (3.2) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    157381 4u50:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    157382 4u50:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    157383 4u50:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    157384 4u50:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    157385 4u50:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    157386 4u50:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157387 4u50:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157388 4u50:O6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    157389 4u50:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    157390 4u50:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    157391 4u50:O7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    157392 4u50:O7 (3.2) BS04 ZN ? GO:0000448 ... P49166 25209664
    157393 4u50:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    157394 4u50:O7 (3.2) BS06 OHX ? GO:0000448 ... P49166 25209664
    157395 4u50:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    157396 4u50:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    157397 4u50:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    157398 4u50:Q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157399 4u50:Q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157400 4u50:Q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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