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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157001 4u4y:s1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    157002 4u4y:s1 (3.2) BS02 rna ? GO:0000462 ... P33442 25209664
    157003 4u4y:s1 (3.2) BS03 OHX ? GO:0000462 ... P33442 25209664
    157004 4u4y:s2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    157005 4u4y:s3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    157006 4u4y:s4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157007 4u4y:s4 (3.2) BS02 MG ? GO:0002181 ... P0CX35 25209664
    157008 4u4y:s5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    157009 4u4y:s6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157010 4u4y:s7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    157011 4u4y:s8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157012 4u4y:s8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157013 4u4y:s9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    157014 4u4y:sM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    157015 4u4y:sM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    157016 4u4y:sM (3.2) BS03 MG ? GO:0000723 ... P39015 25209664
    157017 4u4y:sR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    157018 4u4y:sR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    157019 4u4z:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    157020 4u4z:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157021 4u4z:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    157022 4u4z:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    157023 4u4z:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    157024 4u4z:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    157025 4u4z:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    157026 4u4z:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 25209664
    157027 4u4z:C5 (3.1) BS03 OHX ? GO:0000028 ... Q01855 25209664
    157028 4u4z:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157029 4u4z:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    157030 4u4z:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157031 4u4z:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    157032 4u4z:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    157033 4u4z:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157034 4u4z:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157035 4u4z:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157036 4u4z:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157037 4u4z:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    157038 4u4z:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    157039 4u4z:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    157040 4u4z:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157041 4u4z:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    157042 4u4z:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    157043 4u4z:D9 (3.1) BS03 OHX ? GO:0002181 ... P41057 25209664
    157044 4u4z:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157045 4u4z:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    157046 4u4z:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    157047 4u4z:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157048 4u4z:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157049 4u4z:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157050 4u4z:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    157051 4u4z:L3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    157052 4u4z:L3 (3.1) BS03 OHX ? GO:0000027 ... P14126 25209664
    157053 4u4z:L3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    157054 4u4z:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    157055 4u4z:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    157056 4u4z:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    157057 4u4z:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    157058 4u4z:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    157059 4u4z:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    157060 4u4z:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    157061 4u4z:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    157062 4u4z:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    157063 4u4z:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    157064 4u4z:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    157065 4u4z:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    157066 4u4z:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    157067 4u4z:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 25209664
    157068 4u4z:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    157069 4u4z:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    157070 4u4z:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    157071 4u4z:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    157072 4u4z:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    157073 4u4z:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    157074 4u4z:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    157075 4u4z:M5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    157076 4u4z:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    157077 4u4z:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    157078 4u4z:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    157079 4u4z:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 25209664
    157080 4u4z:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    157081 4u4z:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    157082 4u4z:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    157083 4u4z:M9 (3.1) BS03 MG ? GO:0002181 ... P0CX82 25209664
    157084 4u4z:M9 (3.1) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    157085 4u4z:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    157086 4u4z:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    157087 4u4z:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    157088 4u4z:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    157089 4u4z:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    157090 4u4z:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    157091 4u4z:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    157092 4u4z:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    157093 4u4z:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    157094 4u4z:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    157095 4u4z:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    157096 4u4z:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    157097 4u4z:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    157098 4u4z:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    157099 4u4z:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    157100 4u4z:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 25209664
    157101 4u4z:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 25209664
    157102 4u4z:N8 (3.1) BS04 MG ? GO:0002181 ... P02406 25209664
    157103 4u4z:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    157104 4u4z:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    157105 4u4z:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    157106 4u4z:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    157107 4u4z:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    157108 4u4z:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    157109 4u4z:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 25209664
    157110 4u4z:O4 (3.1) BS01 rna ? GO:0003735 ... P87262 25209664
    157111 4u4z:O4 (3.1) BS02 MG ? GO:0003735 ... P87262 25209664
    157112 4u4z:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    157113 4u4z:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    157114 4u4z:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 25209664
    157115 4u4z:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    157116 4u4z:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    157117 4u4z:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    157118 4u4z:O7 (3.1) BS04 ZN ? GO:0000448 ... P49166 25209664
    157119 4u4z:O7 (3.1) BS05 OHX ? GO:0000448 ... P49166 25209664
    157120 4u4z:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 25209664
    157121 4u4z:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    157122 4u4z:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    157123 4u4z:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    157124 4u4z:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    157125 4u4z:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    157126 4u4z:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    157127 4u4z:Q2 (3.1) BS02 3K5 ? GO:0002181 ... P0CX27 25209664
    157128 4u4z:Q2 (3.1) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    157129 4u4z:Q2 (3.1) BS04 OHX ? GO:0002181 ... P0CX27 25209664
    157130 4u4z:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    157131 4u4z:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    157132 4u4z:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    157133 4u4z:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    157134 4u4z:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    157135 4u4z:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    157136 4u4z:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    157137 4u4z:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 25209664
    157138 4u4z:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    157139 4u4z:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    157140 4u4z:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    157141 4u4z:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    157142 4u4z:S8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    157143 4u4z:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    157144 4u4z:S9 (3.1) BS02 OHX ? GO:0000462 ... O13516 25209664
    157145 4u4z:SM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    157146 4u4z:SM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    157147 4u4z:SM (3.1) BS03 MG ? GO:0000723 ... P39015 25209664
    157148 4u4z:SR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    157149 4u4z:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    157150 4u4z:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    157151 4u4z:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    157152 4u4z:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    157153 4u4z:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    157154 4u4z:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    157155 4u4z:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    157156 4u4z:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    157157 4u4z:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    157158 4u4z:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 25209664
    157159 4u4z:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    157160 4u4z:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    157161 4u4z:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    157162 4u4z:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    157163 4u4z:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    157164 4u4z:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    157165 4u4z:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    157166 4u4z:d3 (3.1) BS02 MG ? GO:0000462 ... P0CX29 25209664
    157167 4u4z:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    157168 4u4z:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157169 4u4z:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    157170 4u4z:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    157171 4u4z:d6 (3.1) BS03 MG ? GO:0003735 ... P39939 25209664
    157172 4u4z:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    157173 4u4z:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 25209664
    157174 4u4z:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    157175 4u4z:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    157176 4u4z:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    157177 4u4z:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    157178 4u4z:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    157179 4u4z:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    157180 4u4z:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    157181 4u4z:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    157182 4u4z:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    157183 4u4z:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    157184 4u4z:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    157185 4u4z:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 25209664
    157186 4u4z:l3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    157187 4u4z:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    157188 4u4z:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    157189 4u4z:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    157190 4u4z:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    157191 4u4z:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    157192 4u4z:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 25209664
    157193 4u4z:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 25209664
    157194 4u4z:l5 (3.1) BS05 OHX ? GO:0000027 ... P26321 25209664
    157195 4u4z:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    157196 4u4z:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    157197 4u4z:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    157198 4u4z:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    157199 4u4z:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    157200 4u4z:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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