Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156801 4u4y:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    156802 4u4y:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    156803 4u4y:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    156804 4u4y:M5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    156805 4u4y:M5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    156806 4u4y:M5 (3.2) BS03 OHX ? GO:0002181 ... P05748 25209664
    156807 4u4y:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    156808 4u4y:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    156809 4u4y:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    156810 4u4y:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    156811 4u4y:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    156812 4u4y:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156813 4u4y:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156814 4u4y:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156815 4u4y:M9 (3.2) BS03 MG ? GO:0002181 ... P0CX82 25209664
    156816 4u4y:M9 (3.2) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    156817 4u4y:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156818 4u4y:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156819 4u4y:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    156820 4u4y:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    156821 4u4y:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156822 4u4y:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    156823 4u4y:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156824 4u4y:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156825 4u4y:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    156826 4u4y:N4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    156827 4u4y:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    156828 4u4y:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    156829 4u4y:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    156830 4u4y:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    156831 4u4y:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156832 4u4y:N7 (3.2) BS02 OHX ? GO:0002181 ... P0C2H6 25209664
    156833 4u4y:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    156834 4u4y:N8 (3.2) BS02 MG ? GO:0002181 ... P02406 25209664
    156835 4u4y:N8 (3.2) BS03 MG ? GO:0002181 ... P02406 25209664
    156836 4u4y:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    156837 4u4y:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    156838 4u4y:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    156839 4u4y:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156840 4u4y:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    156841 4u4y:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    156842 4u4y:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    156843 4u4y:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    156844 4u4y:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    156845 4u4y:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156846 4u4y:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156847 4u4y:O6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    156848 4u4y:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    156849 4u4y:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    156850 4u4y:O7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    156851 4u4y:O7 (3.2) BS04 ZN ? GO:0000448 ... P49166 25209664
    156852 4u4y:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    156853 4u4y:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    156854 4u4y:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    156855 4u4y:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    156856 4u4y:Q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156857 4u4y:Q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156858 4u4y:Q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156859 4u4y:Q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156860 4u4y:Q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156861 4u4y:Q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156862 4u4y:Q3 (3.2) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    156863 4u4y:S0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    156864 4u4y:S1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    156865 4u4y:S2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    156866 4u4y:S3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    156867 4u4y:S4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156868 4u4y:S5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    156869 4u4y:S6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156870 4u4y:S7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    156871 4u4y:S8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156872 4u4y:S8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156873 4u4y:S8 (3.2) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    156874 4u4y:S9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    156875 4u4y:S9 (3.2) BS02 OHX ? GO:0000462 ... O13516 25209664
    156876 4u4y:SM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    156877 4u4y:SM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    156878 4u4y:SR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    156879 4u4y:SR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    156880 4u4y:c0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    156881 4u4y:c1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156882 4u4y:c2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    156883 4u4y:c3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    156884 4u4y:c3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    156885 4u4y:c3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    156886 4u4y:c4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    156887 4u4y:c5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    156888 4u4y:c5 (3.2) BS02 OHX ? GO:0000028 ... Q01855 25209664
    156889 4u4y:c6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156890 4u4y:c7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    156891 4u4y:c8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156892 4u4y:c9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    156893 4u4y:d0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    156894 4u4y:d2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156895 4u4y:d3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156896 4u4y:d3 (3.2) BS02 MG ? GO:0000462 ... P0CX29 25209664
    156897 4u4y:d4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156898 4u4y:d5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156899 4u4y:d6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    156900 4u4y:d6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    156901 4u4y:d7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    156902 4u4y:d7 (3.2) BS02 ZN ? GO:0000028 ... P35997 25209664
    156903 4u4y:d8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156904 4u4y:d9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    156905 4u4y:d9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    156906 4u4y:e0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156907 4u4y:e1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    156908 4u4y:e1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    156909 4u4y:l2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156910 4u4y:l2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156911 4u4y:l2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    156912 4u4y:l3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    156913 4u4y:l3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    156914 4u4y:l3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    156915 4u4y:l3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    156916 4u4y:l4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    156917 4u4y:l4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    156918 4u4y:l4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    156919 4u4y:l4 (3.2) BS04 OHX ? GO:0002181 ... P10664 25209664
    156920 4u4y:l5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    156921 4u4y:l5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    156922 4u4y:l5 (3.2) BS03 OHX ? GO:0000027 ... P26321 25209664
    156923 4u4y:l5 (3.2) BS04 OHX ? GO:0000027 ... P26321 25209664
    156924 4u4y:l6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    156925 4u4y:l7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    156926 4u4y:l7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    156927 4u4y:l8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    156928 4u4y:l8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    156929 4u4y:l9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    156930 4u4y:l9 (3.2) BS02 OHX ? GO:0002181 ... P05738 25209664
    156931 4u4y:m0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    156932 4u4y:m0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    156933 4u4y:m0 (3.2) BS03 OHX ? GO:0000027 ... P41805 25209664
    156934 4u4y:m0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    156935 4u4y:m1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156936 4u4y:m1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156937 4u4y:m1 (3.2) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    156938 4u4y:m3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    156939 4u4y:m3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    156940 4u4y:m4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    156941 4u4y:m5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    156942 4u4y:m5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    156943 4u4y:m6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    156944 4u4y:m6 (3.2) BS02 MG ? GO:0000470 ... P26784 25209664
    156945 4u4y:m7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    156946 4u4y:m7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    156947 4u4y:m7 (3.2) BS03 OHX ? GO:0000448 ... P05740 25209664
    156948 4u4y:m8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156949 4u4y:m9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156950 4u4y:m9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156951 4u4y:n0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156952 4u4y:n0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156953 4u4y:n1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    156954 4u4y:n1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    156955 4u4y:n1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156956 4u4y:n2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    156957 4u4y:n3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156958 4u4y:n3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156959 4u4y:n3 (3.2) BS03 OHX ? GO:0002181 ... P0CX41 25209664
    156960 4u4y:n4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    156961 4u4y:n4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    156962 4u4y:n5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    156963 4u4y:n5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    156964 4u4y:n6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    156965 4u4y:n6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    156966 4u4y:n7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156967 4u4y:n8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    156968 4u4y:n8 (3.2) BS02 OHX ? GO:0002181 ... P02406 25209664
    156969 4u4y:n9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    156970 4u4y:n9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    156971 4u4y:o0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    156972 4u4y:o1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156973 4u4y:o2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    156974 4u4y:o3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    156975 4u4y:o3 (3.2) BS02 MG ? GO:0000027 ... P05744 25209664
    156976 4u4y:o3 (3.2) BS03 OHX ? GO:0000027 ... P05744 25209664
    156977 4u4y:o4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    156978 4u4y:o4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    156979 4u4y:o5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156980 4u4y:o5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156981 4u4y:o6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    156982 4u4y:o7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    156983 4u4y:o7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    156984 4u4y:o7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    156985 4u4y:o7 (3.2) BS04 ZN ? GO:0000448 ... P49166 25209664
    156986 4u4y:o7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    156987 4u4y:o7 (3.2) BS06 OHX ? GO:0000448 ... P49166 25209664
    156988 4u4y:o8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    156989 4u4y:o9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    156990 4u4y:o9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    156991 4u4y:p0 (3.2) BS01 rna ? GO:0000027 ... P05317 25209664
    156992 4u4y:q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156993 4u4y:q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156994 4u4y:q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156995 4u4y:q2 (3.2) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156996 4u4y:q2 (3.2) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156997 4u4y:q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156998 4u4y:q3 (3.2) BS02 rna ? GO:0002181 ... P0CX25 25209664
    156999 4u4y:q3 (3.2) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    157000 4u4y:s0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417