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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156601 4u4u:S8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    156602 4u4u:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    156603 4u4u:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    156604 4u4u:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    156605 4u4u:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    156606 4u4u:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    156607 4u4u:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    156608 4u4u:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156609 4u4u:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    156610 4u4u:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    156611 4u4u:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    156612 4u4u:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    156613 4u4u:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    156614 4u4u:c5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    156615 4u4u:c5 (3.0) BS02 OHX ? GO:0000028 ... Q01855 25209664
    156616 4u4u:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156617 4u4u:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    156618 4u4u:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156619 4u4u:c9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    156620 4u4u:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    156621 4u4u:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156622 4u4u:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156623 4u4u:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156624 4u4u:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156625 4u4u:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    156626 4u4u:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    156627 4u4u:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    156628 4u4u:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156629 4u4u:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    156630 4u4u:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    156631 4u4u:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156632 4u4u:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    156633 4u4u:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156634 4u4u:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156635 4u4u:l2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    156636 4u4u:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    156637 4u4u:l3 (3.0) BS02 OHX ? GO:0000027 ... P14126 25209664
    156638 4u4u:l3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    156639 4u4u:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    156640 4u4u:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    156641 4u4u:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    156642 4u4u:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    156643 4u4u:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    156644 4u4u:l5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    156645 4u4u:l5 (3.0) BS03 MG ? GO:0000027 ... P26321 25209664
    156646 4u4u:l5 (3.0) BS04 OHX ? GO:0000027 ... P26321 25209664
    156647 4u4u:l5 (3.0) BS05 OHX ? GO:0000027 ... P26321 25209664
    156648 4u4u:l6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    156649 4u4u:l7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    156650 4u4u:l7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    156651 4u4u:l8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    156652 4u4u:l8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    156653 4u4u:l9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    156654 4u4u:l9 (3.0) BS02 OHX ? GO:0002181 ... P05738 25209664
    156655 4u4u:m0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    156656 4u4u:m0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    156657 4u4u:m0 (3.0) BS03 OHX ? GO:0000027 ... P41805 25209664
    156658 4u4u:m0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    156659 4u4u:m1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156660 4u4u:m1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156661 4u4u:m1 (3.0) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    156662 4u4u:m3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    156663 4u4u:m3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    156664 4u4u:m4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    156665 4u4u:m5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    156666 4u4u:m5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    156667 4u4u:m5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    156668 4u4u:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    156669 4u4u:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    156670 4u4u:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    156671 4u4u:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    156672 4u4u:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    156673 4u4u:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156674 4u4u:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156675 4u4u:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156676 4u4u:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156677 4u4u:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156678 4u4u:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    156679 4u4u:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    156680 4u4u:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    156681 4u4u:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156682 4u4u:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156683 4u4u:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    156684 4u4u:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    156685 4u4u:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    156686 4u4u:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    156687 4u4u:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    156688 4u4u:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    156689 4u4u:n6 (3.0) BS03 OHX ? GO:0002181 ... P05743 25209664
    156690 4u4u:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156691 4u4u:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    156692 4u4u:n8 (3.0) BS02 OHX ? GO:0002181 ... P02406 25209664
    156693 4u4u:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    156694 4u4u:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    156695 4u4u:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    156696 4u4u:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156697 4u4u:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    156698 4u4u:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    156699 4u4u:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    156700 4u4u:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    156701 4u4u:o4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    156702 4u4u:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156703 4u4u:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156704 4u4u:o6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    156705 4u4u:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    156706 4u4u:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    156707 4u4u:o7 (3.0) BS03 ZN ? GO:0000448 ... P49166 25209664
    156708 4u4u:o7 (3.0) BS04 OHX ? GO:0000448 ... P49166 25209664
    156709 4u4u:o7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    156710 4u4u:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    156711 4u4u:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    156712 4u4u:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    156713 4u4u:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    156714 4u4u:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    156715 4u4u:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156716 4u4u:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156717 4u4u:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156718 4u4u:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156719 4u4u:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156720 4u4u:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156721 4u4u:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    156722 4u4u:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    156723 4u4u:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    156724 4u4u:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    156725 4u4u:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    156726 4u4u:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    156727 4u4u:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156728 4u4u:s4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    156729 4u4u:s5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    156730 4u4u:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156731 4u4u:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    156732 4u4u:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156733 4u4u:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156734 4u4u:s8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    156735 4u4u:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    156736 4u4u:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    156737 4u4u:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    156738 4u4u:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    156739 4u4w:A (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    156740 4u4w:B (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    156741 4u4x:A (1.56) BS01 3C2 ? GO:0015276 ... P19491 25375781 MOAD: Kd=9.8uM
    PDBbind: -logKd/Ki=5.01, Kd=9.8uM
    156742 4u4x:A (1.56) BS02 GLU ? GO:0015276 ... P19491 25375781
    156743 4u4x:A (1.56) BS03 3C2 ? GO:0015276 ... P19491 25375781 MOAD: Kd=9.8uM
    PDBbind: -logKd/Ki=5.01, Kd=9.8uM
    156744 4u4x:B (1.56) BS01 3C2 ? GO:0015276 ... P19491 25375781 MOAD: Kd=9.8uM
    PDBbind: -logKd/Ki=5.01, Kd=9.8uM
    156745 4u4x:B (1.56) BS02 3C2 ? GO:0015276 ... P19491 25375781 MOAD: Kd=9.8uM
    PDBbind: -logKd/Ki=5.01, Kd=9.8uM
    156746 4u4x:B (1.56) BS03 GLU ? GO:0015276 ... P19491 25375781
    156747 4u4y:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    156748 4u4y:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156749 4u4y:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    156750 4u4y:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    156751 4u4y:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    156752 4u4y:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    156753 4u4y:C5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    156754 4u4y:C5 (3.2) BS02 rna ? GO:0000028 ... Q01855 25209664
    156755 4u4y:C5 (3.2) BS03 OHX ? GO:0000028 ... Q01855 25209664
    156756 4u4y:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156757 4u4y:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    156758 4u4y:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156759 4u4y:C9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    156760 4u4y:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    156761 4u4y:D1 (3.2) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    156762 4u4y:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156763 4u4y:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156764 4u4y:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156765 4u4y:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156766 4u4y:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    156767 4u4y:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    156768 4u4y:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    156769 4u4y:D7 (3.2) BS02 ZN ? GO:0000028 ... P35997 25209664
    156770 4u4y:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156771 4u4y:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    156772 4u4y:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    156773 4u4y:D9 (3.2) BS03 OHX ? GO:0002181 ... P41057 25209664
    156774 4u4y:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156775 4u4y:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    156776 4u4y:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    156777 4u4y:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156778 4u4y:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156779 4u4y:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    156780 4u4y:L2 (3.2) BS04 MG ? GO:0002181 ... P0CX45 25209664
    156781 4u4y:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    156782 4u4y:L3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    156783 4u4y:L3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    156784 4u4y:L3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    156785 4u4y:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    156786 4u4y:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    156787 4u4y:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    156788 4u4y:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    156789 4u4y:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    156790 4u4y:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    156791 4u4y:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    156792 4u4y:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    156793 4u4y:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    156794 4u4y:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    156795 4u4y:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    156796 4u4y:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    156797 4u4y:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    156798 4u4y:M0 (3.2) BS03 MG ? GO:0000027 ... P41805 25209664
    156799 4u4y:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156800 4u4y:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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