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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156401 4u4r:n1 (2.801) BS02 rna ? GO:0002181 ... Q02753 25209664
    156402 4u4r:n1 (2.801) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156403 4u4r:n2 (2.801) BS01 rna ? GO:0002181 ... P05749 25209664
    156404 4u4r:n3 (2.801) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156405 4u4r:n3 (2.801) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156406 4u4r:n4 (2.801) BS01 rna ? GO:0002181 ... P04449 25209664
    156407 4u4r:n4 (2.801) BS02 rna ? GO:0002181 ... P04449 25209664
    156408 4u4r:n5 (2.801) BS01 rna ? GO:0000027 ... P04456 25209664
    156409 4u4r:n5 (2.801) BS02 rna ? GO:0000027 ... P04456 25209664
    156410 4u4r:n6 (2.801) BS01 rna ? GO:0002181 ... P05743 25209664
    156411 4u4r:n6 (2.801) BS02 rna ? GO:0002181 ... P05743 25209664
    156412 4u4r:n7 (2.801) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156413 4u4r:n8 (2.801) BS01 rna ? GO:0002181 ... P02406 25209664
    156414 4u4r:n8 (2.801) BS02 MG ? GO:0002181 ... P02406 25209664
    156415 4u4r:n9 (2.801) BS01 rna ? GO:0002181 ... P05747 25209664
    156416 4u4r:n9 (2.801) BS02 OHX ? GO:0002181 ... P05747 25209664
    156417 4u4r:o0 (2.801) BS01 rna ? GO:0002181 ... P14120 25209664
    156418 4u4r:o1 (2.801) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156419 4u4r:o2 (2.801) BS01 rna ? GO:0002181 ... P38061 25209664
    156420 4u4r:o3 (2.801) BS01 rna ? GO:0000027 ... P05744 25209664
    156421 4u4r:o3 (2.801) BS02 MG ? GO:0000027 ... P05744 25209664
    156422 4u4r:o3 (2.801) BS03 OHX ? GO:0000027 ... P05744 25209664
    156423 4u4r:o4 (2.801) BS01 rna ? GO:0002181 ... P87262 25209664
    156424 4u4r:o4 (2.801) BS02 MG ? GO:0002181 ... P87262 25209664
    156425 4u4r:o5 (2.801) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156426 4u4r:o5 (2.801) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156427 4u4r:o6 (2.801) BS01 rna ? GO:0002181 ... P05745 25209664
    156428 4u4r:o7 (2.801) BS01 rna ? GO:0000448 ... P49166 25209664
    156429 4u4r:o7 (2.801) BS02 rna ? GO:0000448 ... P49166 25209664
    156430 4u4r:o7 (2.801) BS03 OHX ? GO:0000448 ... P49166 25209664
    156431 4u4r:o7 (2.801) BS04 ZN ? GO:0000448 ... P49166 25209664
    156432 4u4r:o7 (2.801) BS05 OHX ? GO:0000448 ... P49166 25209664
    156433 4u4r:o8 (2.801) BS01 rna ? GO:0002181 ... P49167 25209664
    156434 4u4r:o9 (2.801) BS01 rna ? GO:0002181 ... P04650 25209664
    156435 4u4r:o9 (2.801) BS02 rna ? GO:0002181 ... P04650 25209664
    156436 4u4r:o9 (2.801) BS03 OHX ? GO:0002181 ... P04650 25209664
    156437 4u4r:p0 (2.801) BS01 rna ? GO:0000027 ... P05317 25209664
    156438 4u4r:q0 (2.801) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156439 4u4r:q0 (2.801) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156440 4u4r:q2 (2.801) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156441 4u4r:q2 (2.801) BS02 3H3 ? GO:0002181 ... P0CX27 25209664
    156442 4u4r:q2 (2.801) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    156443 4u4r:q2 (2.801) BS04 OHX ? GO:0002181 ... P0CX27 25209664
    156444 4u4r:q3 (2.801) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156445 4u4r:q3 (2.801) BS02 rna ? GO:0002181 ... P0CX25 25209664
    156446 4u4r:q3 (2.801) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    156447 4u4r:s0 (2.801) BS01 rna ? GO:0000028 ... P32905 25209664
    156448 4u4r:s1 (2.801) BS01 rna ? GO:0000462 ... P33442 25209664
    156449 4u4r:s1 (2.801) BS02 OHX ? GO:0000462 ... P33442 25209664
    156450 4u4r:s2 (2.801) BS01 rna ? GO:0000054 ... P25443 25209664
    156451 4u4r:s3 (2.801) BS01 rna ? GO:0000054 ... P05750 25209664
    156452 4u4r:s4 (2.801) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156453 4u4r:s5 (2.801) BS01 rna ? GO:0000028 ... P26783 25209664
    156454 4u4r:s6 (2.801) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156455 4u4r:s7 (2.801) BS01 rna ? GO:0002181 ... P26786 25209664
    156456 4u4r:s8 (2.801) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156457 4u4r:s8 (2.801) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156458 4u4r:s9 (2.801) BS01 rna ? GO:0000462 ... O13516 25209664
    156459 4u4r:s9 (2.801) BS02 OHX ? GO:0000462 ... O13516 25209664
    156460 4u4r:sM (2.801) BS01 rna ? GO:0000723 ... P39015 25209664
    156461 4u4r:sM (2.801) BS02 rna ? GO:0000723 ... P39015 25209664
    156462 4u4r:sM (2.801) BS03 MG ? GO:0000723 ... P39015 25209664
    156463 4u4r:sR (2.801) BS01 rna ? GO:0001965 ... P38011 25209664
    156464 4u4s:A (1.9) BS01 3C1 ? GO:0015276 ... P19491 25375781 MOAD: Kd=1200uM
    PDBbind: -logKd/Ki=2.92, Kd=1200uM
    156465 4u4s:A (1.9) BS02 GLU ? GO:0015276 ... P19491 25375781
    156466 4u4s:A (1.9) BS03 3C1 ? GO:0015276 ... P19491 25375781 MOAD: Kd=1200uM
    PDBbind: -logKd/Ki=2.92, Kd=1200uM
    156467 4u4s:B (1.9) BS01 3C1 ? GO:0015276 ... P19491 25375781 MOAD: Kd=1200uM
    PDBbind: -logKd/Ki=2.92, Kd=1200uM
    156468 4u4s:B (1.9) BS02 3C1 ? GO:0015276 ... P19491 25375781 MOAD: Kd=1200uM
    PDBbind: -logKd/Ki=2.92, Kd=1200uM
    156469 4u4s:B (1.9) BS03 GLU ? GO:0015276 ... P19491 25375781
    156470 4u4t:A (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    156471 4u4t:A (2.4) BS02 ZN ? GO:0005452 ... P10903 25959928
    156472 4u4u:C0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    156473 4u4u:C1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156474 4u4u:C2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    156475 4u4u:C3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    156476 4u4u:C3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    156477 4u4u:C3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    156478 4u4u:C3 (3.0) BS04 OHX ? GO:0000462 ... P05756 25209664
    156479 4u4u:C4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    156480 4u4u:C5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    156481 4u4u:C5 (3.0) BS02 rna ? GO:0000028 ... Q01855 25209664
    156482 4u4u:C5 (3.0) BS03 OHX ? GO:0000028 ... Q01855 25209664
    156483 4u4u:C6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156484 4u4u:C7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    156485 4u4u:C8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156486 4u4u:C8 (3.0) BS02 MG ? GO:0000054 ... P0CX55 25209664
    156487 4u4u:C9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    156488 4u4u:D0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    156489 4u4u:D2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156490 4u4u:D3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156491 4u4u:D4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156492 4u4u:D5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156493 4u4u:D6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    156494 4u4u:D6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    156495 4u4u:D7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    156496 4u4u:D8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156497 4u4u:D9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    156498 4u4u:D9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    156499 4u4u:D9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    156500 4u4u:E0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156501 4u4u:E1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    156502 4u4u:E1 (3.0) BS02 ZN ? GO:0003735 ... P05759 25209664
    156503 4u4u:L2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156504 4u4u:L2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156505 4u4u:L2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    156506 4u4u:L3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    156507 4u4u:L3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    156508 4u4u:L3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    156509 4u4u:L3 (3.0) BS04 OHX ? GO:0000027 ... P14126 25209664
    156510 4u4u:L4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    156511 4u4u:L4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    156512 4u4u:L4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    156513 4u4u:L5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    156514 4u4u:L5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    156515 4u4u:L6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    156516 4u4u:L6 (3.0) BS02 MG ? GO:0000027 ... Q02326 25209664
    156517 4u4u:L7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    156518 4u4u:L7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    156519 4u4u:L8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    156520 4u4u:L8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    156521 4u4u:L9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    156522 4u4u:M0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    156523 4u4u:M0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    156524 4u4u:M0 (3.0) BS03 MG ? GO:0000027 ... P41805 25209664
    156525 4u4u:M1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156526 4u4u:M1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156527 4u4u:M3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    156528 4u4u:M3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    156529 4u4u:M4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    156530 4u4u:M5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    156531 4u4u:M5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    156532 4u4u:M5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    156533 4u4u:M6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    156534 4u4u:M7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    156535 4u4u:M7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    156536 4u4u:M7 (3.0) BS03 MG ? GO:0000448 ... P05740 25209664
    156537 4u4u:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    156538 4u4u:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156539 4u4u:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156540 4u4u:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156541 4u4u:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    156542 4u4u:M9 (3.0) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    156543 4u4u:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156544 4u4u:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156545 4u4u:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    156546 4u4u:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    156547 4u4u:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156548 4u4u:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    156549 4u4u:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156550 4u4u:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156551 4u4u:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    156552 4u4u:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    156553 4u4u:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    156554 4u4u:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    156555 4u4u:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    156556 4u4u:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    156557 4u4u:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156558 4u4u:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    156559 4u4u:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    156560 4u4u:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    156561 4u4u:N8 (3.0) BS04 MG ? GO:0002181 ... P02406 25209664
    156562 4u4u:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    156563 4u4u:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    156564 4u4u:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    156565 4u4u:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156566 4u4u:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    156567 4u4u:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    156568 4u4u:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    156569 4u4u:O4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    156570 4u4u:O4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    156571 4u4u:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156572 4u4u:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156573 4u4u:O6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    156574 4u4u:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    156575 4u4u:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    156576 4u4u:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    156577 4u4u:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    156578 4u4u:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    156579 4u4u:O7 (3.0) BS06 OHX ? GO:0000448 ... P49166 25209664
    156580 4u4u:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    156581 4u4u:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    156582 4u4u:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    156583 4u4u:O9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    156584 4u4u:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156585 4u4u:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156586 4u4u:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156587 4u4u:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156588 4u4u:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156589 4u4u:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156590 4u4u:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    156591 4u4u:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    156592 4u4u:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    156593 4u4u:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    156594 4u4u:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    156595 4u4u:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156596 4u4u:S5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    156597 4u4u:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156598 4u4u:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    156599 4u4u:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156600 4u4u:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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