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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156201 4u4r:C5 (2.801) BS01 rna ? GO:0000028 ... Q01855 25209664
    156202 4u4r:C5 (2.801) BS02 rna ? GO:0000028 ... Q01855 25209664
    156203 4u4r:C5 (2.801) BS03 OHX ? GO:0000028 ... Q01855 25209664
    156204 4u4r:C6 (2.801) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156205 4u4r:C7 (2.801) BS01 rna ? GO:0000028 ... P02407 25209664
    156206 4u4r:C8 (2.801) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156207 4u4r:C8 (2.801) BS02 MG ? GO:0000054 ... P0CX55 25209664
    156208 4u4r:C8 (2.801) BS03 MG ? GO:0000054 ... P0CX55 25209664
    156209 4u4r:C8 (2.801) BS04 OHX ? GO:0000054 ... P0CX55 25209664
    156210 4u4r:C9 (2.801) BS01 rna ? GO:0000028 ... P07280 25209664
    156211 4u4r:D0 (2.801) BS01 rna ? GO:0000462 ... P38701 25209664
    156212 4u4r:D2 (2.801) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156213 4u4r:D3 (2.801) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156214 4u4r:D4 (2.801) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156215 4u4r:D5 (2.801) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156216 4u4r:D6 (2.801) BS01 rna ? GO:0003735 ... P39939 25209664
    156217 4u4r:D6 (2.801) BS02 ZN ? GO:0003735 ... P39939 25209664
    156218 4u4r:D7 (2.801) BS01 rna ? GO:0000028 ... P35997 25209664
    156219 4u4r:D8 (2.801) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156220 4u4r:D9 (2.801) BS01 rna ? GO:0002181 ... P41057 25209664
    156221 4u4r:D9 (2.801) BS02 ZN ? GO:0002181 ... P41057 25209664
    156222 4u4r:D9 (2.801) BS03 OHX ? GO:0002181 ... P41057 25209664
    156223 4u4r:E0 (2.801) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156224 4u4r:E1 (2.801) BS01 rna ? GO:0003735 ... P05759 25209664
    156225 4u4r:E1 (2.801) BS02 ZN ? GO:0003735 ... P05759 25209664
    156226 4u4r:L2 (2.801) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156227 4u4r:L2 (2.801) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156228 4u4r:L2 (2.801) BS03 MG ? GO:0002181 ... P0CX45 25209664
    156229 4u4r:L3 (2.801) BS01 rna ? GO:0000027 ... P14126 25209664
    156230 4u4r:L3 (2.801) BS02 OHX ? GO:0000027 ... P14126 25209664
    156231 4u4r:L3 (2.801) BS03 OHX ? GO:0000027 ... P14126 25209664
    156232 4u4r:L4 (2.801) BS01 rna ? GO:0002181 ... P10664 25209664
    156233 4u4r:L4 (2.801) BS02 rna ? GO:0002181 ... P10664 25209664
    156234 4u4r:L4 (2.801) BS03 OHX ? GO:0002181 ... P10664 25209664
    156235 4u4r:L5 (2.801) BS01 rna ? GO:0000027 ... P26321 25209664
    156236 4u4r:L5 (2.801) BS02 rna ? GO:0000027 ... P26321 25209664
    156237 4u4r:L6 (2.801) BS01 rna ? GO:0000027 ... Q02326 25209664
    156238 4u4r:L7 (2.801) BS01 rna ? GO:0000463 ... P05737 25209664
    156239 4u4r:L7 (2.801) BS02 rna ? GO:0000463 ... P05737 25209664
    156240 4u4r:L7 (2.801) BS03 OHX ? GO:0000463 ... P05737 25209664
    156241 4u4r:L8 (2.801) BS01 rna ? GO:0000470 ... P17076 25209664
    156242 4u4r:L8 (2.801) BS02 rna ? GO:0000470 ... P17076 25209664
    156243 4u4r:L9 (2.801) BS01 rna ? GO:0002181 ... P05738 25209664
    156244 4u4r:M0 (2.801) BS01 rna ? GO:0000027 ... P41805 25209664
    156245 4u4r:M0 (2.801) BS02 rna ? GO:0000027 ... P41805 25209664
    156246 4u4r:M0 (2.801) BS03 MG ? GO:0000027 ... P41805 25209664
    156247 4u4r:M0 (2.801) BS04 OHX ? GO:0000027 ... P41805 25209664
    156248 4u4r:M1 (2.801) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156249 4u4r:M1 (2.801) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156250 4u4r:M3 (2.801) BS01 rna ? GO:0002181 ... Q12690 25209664
    156251 4u4r:M3 (2.801) BS02 rna ? GO:0002181 ... Q12690 25209664
    156252 4u4r:M3 (2.801) BS03 MG ? GO:0002181 ... Q12690 25209664
    156253 4u4r:M4 (2.801) BS01 rna ? GO:0000027 ... P36105 25209664
    156254 4u4r:M5 (2.801) BS01 rna ? GO:0002181 ... P05748 25209664
    156255 4u4r:M5 (2.801) BS02 rna ? GO:0002181 ... P05748 25209664
    156256 4u4r:M5 (2.801) BS03 OHX ? GO:0002181 ... P05748 25209664
    156257 4u4r:M6 (2.801) BS01 rna ? GO:0000470 ... P26784 25209664
    156258 4u4r:M7 (2.801) BS01 rna ? GO:0000448 ... P05740 25209664
    156259 4u4r:M7 (2.801) BS02 rna ? GO:0000448 ... P05740 25209664
    156260 4u4r:M7 (2.801) BS03 MG ? GO:0000448 ... P05740 25209664
    156261 4u4r:M7 (2.801) BS04 OHX ? GO:0000448 ... P05740 25209664
    156262 4u4r:M8 (2.801) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156263 4u4r:M9 (2.801) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156264 4u4r:M9 (2.801) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156265 4u4r:M9 (2.801) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    156266 4u4r:N0 (2.801) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156267 4u4r:N0 (2.801) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156268 4u4r:N1 (2.801) BS01 rna ? GO:0002181 ... Q02753 25209664
    156269 4u4r:N1 (2.801) BS02 rna ? GO:0002181 ... Q02753 25209664
    156270 4u4r:N1 (2.801) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156271 4u4r:N2 (2.801) BS01 rna ? GO:0002181 ... P05749 25209664
    156272 4u4r:N3 (2.801) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156273 4u4r:N3 (2.801) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156274 4u4r:N4 (2.801) BS01 rna ? GO:0002181 ... P04449 25209664
    156275 4u4r:N4 (2.801) BS02 rna ? GO:0002181 ... P04449 25209664
    156276 4u4r:N5 (2.801) BS01 rna ? GO:0000027 ... P04456 25209664
    156277 4u4r:N5 (2.801) BS02 rna ? GO:0000027 ... P04456 25209664
    156278 4u4r:N6 (2.801) BS01 rna ? GO:0002181 ... P05743 25209664
    156279 4u4r:N6 (2.801) BS02 rna ? GO:0002181 ... P05743 25209664
    156280 4u4r:N7 (2.801) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156281 4u4r:N8 (2.801) BS01 rna ? GO:0002181 ... P02406 25209664
    156282 4u4r:N8 (2.801) BS02 MG ? GO:0002181 ... P02406 25209664
    156283 4u4r:N8 (2.801) BS03 MG ? GO:0002181 ... P02406 25209664
    156284 4u4r:N9 (2.801) BS01 rna ? GO:0002181 ... P05747 25209664
    156285 4u4r:N9 (2.801) BS02 OHX ? GO:0002181 ... P05747 25209664
    156286 4u4r:O0 (2.801) BS01 rna ? GO:0002181 ... P14120 25209664
    156287 4u4r:O1 (2.801) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156288 4u4r:O2 (2.801) BS01 rna ? GO:0002181 ... P38061 25209664
    156289 4u4r:O3 (2.801) BS01 rna ? GO:0000027 ... P05744 25209664
    156290 4u4r:O3 (2.801) BS02 OHX ? GO:0000027 ... P05744 25209664
    156291 4u4r:O4 (2.801) BS01 rna ? GO:0002181 ... P87262 25209664
    156292 4u4r:O5 (2.801) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156293 4u4r:O5 (2.801) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156294 4u4r:O6 (2.801) BS01 rna ? GO:0002181 ... P05745 25209664
    156295 4u4r:O7 (2.801) BS01 rna ? GO:0000448 ... P49166 25209664
    156296 4u4r:O7 (2.801) BS02 rna ? GO:0000448 ... P49166 25209664
    156297 4u4r:O7 (2.801) BS03 OHX ? GO:0000448 ... P49166 25209664
    156298 4u4r:O7 (2.801) BS04 ZN ? GO:0000448 ... P49166 25209664
    156299 4u4r:O7 (2.801) BS05 OHX ? GO:0000448 ... P49166 25209664
    156300 4u4r:O7 (2.801) BS06 OHX ? GO:0000448 ... P49166 25209664
    156301 4u4r:O8 (2.801) BS01 rna ? GO:0002181 ... P49167 25209664
    156302 4u4r:O9 (2.801) BS01 rna ? GO:0002181 ... P04650 25209664
    156303 4u4r:O9 (2.801) BS02 rna ? GO:0002181 ... P04650 25209664
    156304 4u4r:O9 (2.801) BS03 OHX ? GO:0002181 ... P04650 25209664
    156305 4u4r:Q0 (2.801) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156306 4u4r:Q0 (2.801) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156307 4u4r:Q2 (2.801) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156308 4u4r:Q2 (2.801) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156309 4u4r:Q2 (2.801) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156310 4u4r:Q3 (2.801) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156311 4u4r:Q3 (2.801) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    156312 4u4r:S0 (2.801) BS01 rna ? GO:0000028 ... P32905 25209664
    156313 4u4r:S1 (2.801) BS01 rna ? GO:0000462 ... P33442 25209664
    156314 4u4r:S2 (2.801) BS01 rna ? GO:0000054 ... P25443 25209664
    156315 4u4r:S3 (2.801) BS01 rna ? GO:0000054 ... P05750 25209664
    156316 4u4r:S4 (2.801) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156317 4u4r:S4 (2.801) BS02 MG ? GO:0002181 ... P0CX35 25209664
    156318 4u4r:S5 (2.801) BS01 rna ? GO:0000028 ... P26783 25209664
    156319 4u4r:S6 (2.801) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156320 4u4r:S7 (2.801) BS01 rna ? GO:0002181 ... P26786 25209664
    156321 4u4r:S8 (2.801) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156322 4u4r:S8 (2.801) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156323 4u4r:S9 (2.801) BS01 rna ? GO:0000462 ... O13516 25209664
    156324 4u4r:S9 (2.801) BS02 OHX ? GO:0000462 ... O13516 25209664
    156325 4u4r:SM (2.801) BS01 rna ? GO:0000723 ... P39015 25209664
    156326 4u4r:SM (2.801) BS02 rna ? GO:0000723 ... P39015 25209664
    156327 4u4r:SM (2.801) BS03 MG ? GO:0000723 ... P39015 25209664
    156328 4u4r:SR (2.801) BS01 rna ? GO:0001965 ... P38011 25209664
    156329 4u4r:SR (2.801) BS02 OHX ? GO:0001965 ... P38011 25209664
    156330 4u4r:c0 (2.801) BS01 rna ? GO:0000054 ... Q08745 25209664
    156331 4u4r:c1 (2.801) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156332 4u4r:c2 (2.801) BS01 rna ? GO:0000028 ... P48589 25209664
    156333 4u4r:c3 (2.801) BS01 rna ? GO:0000462 ... P05756 25209664
    156334 4u4r:c3 (2.801) BS02 rna ? GO:0000462 ... P05756 25209664
    156335 4u4r:c3 (2.801) BS03 OHX ? GO:0000462 ... P05756 25209664
    156336 4u4r:c4 (2.801) BS01 rna ? GO:0000028 ... P06367 25209664
    156337 4u4r:c5 (2.801) BS01 rna ? GO:0000028 ... Q01855 25209664
    156338 4u4r:c5 (2.801) BS02 OHX ? GO:0000028 ... Q01855 25209664
    156339 4u4r:c6 (2.801) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156340 4u4r:c7 (2.801) BS01 rna ? GO:0000028 ... P02407 25209664
    156341 4u4r:c8 (2.801) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156342 4u4r:c9 (2.801) BS01 rna ? GO:0000028 ... P07280 25209664
    156343 4u4r:c9 (2.801) BS02 MG ? GO:0000028 ... P07280 25209664
    156344 4u4r:d0 (2.801) BS01 rna ? GO:0000462 ... P38701 25209664
    156345 4u4r:d2 (2.801) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156346 4u4r:d3 (2.801) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156347 4u4r:d3 (2.801) BS02 MG ? GO:0000462 ... P0CX29 25209664
    156348 4u4r:d4 (2.801) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156349 4u4r:d5 (2.801) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156350 4u4r:d6 (2.801) BS01 rna ? GO:0003735 ... P39939 25209664
    156351 4u4r:d6 (2.801) BS02 ZN ? GO:0003735 ... P39939 25209664
    156352 4u4r:d7 (2.801) BS01 rna ? GO:0000028 ... P35997 25209664
    156353 4u4r:d8 (2.801) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156354 4u4r:d9 (2.801) BS01 rna ? GO:0002181 ... P41057 25209664
    156355 4u4r:d9 (2.801) BS02 ZN ? GO:0002181 ... P41057 25209664
    156356 4u4r:d9 (2.801) BS03 OHX ? GO:0002181 ... P41057 25209664
    156357 4u4r:e0 (2.801) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156358 4u4r:e1 (2.801) BS01 rna ? GO:0003735 ... P05759 25209664
    156359 4u4r:l2 (2.801) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156360 4u4r:l2 (2.801) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156361 4u4r:l3 (2.801) BS01 rna ? GO:0000027 ... P14126 25209664
    156362 4u4r:l3 (2.801) BS02 OHX ? GO:0000027 ... P14126 25209664
    156363 4u4r:l4 (2.801) BS01 rna ? GO:0002181 ... P10664 25209664
    156364 4u4r:l4 (2.801) BS02 rna ? GO:0002181 ... P10664 25209664
    156365 4u4r:l4 (2.801) BS03 OHX ? GO:0002181 ... P10664 25209664
    156366 4u4r:l4 (2.801) BS04 OHX ? GO:0002181 ... P10664 25209664
    156367 4u4r:l5 (2.801) BS01 rna ? GO:0000027 ... P26321 25209664
    156368 4u4r:l5 (2.801) BS02 rna ? GO:0000027 ... P26321 25209664
    156369 4u4r:l5 (2.801) BS03 MG ? GO:0000027 ... P26321 25209664
    156370 4u4r:l5 (2.801) BS04 OHX ? GO:0000027 ... P26321 25209664
    156371 4u4r:l5 (2.801) BS05 OHX ? GO:0000027 ... P26321 25209664
    156372 4u4r:l6 (2.801) BS01 rna ? GO:0000027 ... Q02326 25209664
    156373 4u4r:l7 (2.801) BS01 rna ? GO:0000463 ... P05737 25209664
    156374 4u4r:l7 (2.801) BS02 rna ? GO:0000463 ... P05737 25209664
    156375 4u4r:l8 (2.801) BS01 rna ? GO:0000470 ... P17076 25209664
    156376 4u4r:l8 (2.801) BS02 rna ? GO:0000470 ... P17076 25209664
    156377 4u4r:l9 (2.801) BS01 rna ? GO:0002181 ... P05738 25209664
    156378 4u4r:m0 (2.801) BS01 rna ? GO:0000027 ... P41805 25209664
    156379 4u4r:m0 (2.801) BS02 rna ? GO:0000027 ... P41805 25209664
    156380 4u4r:m0 (2.801) BS03 OHX ? GO:0000027 ... P41805 25209664
    156381 4u4r:m0 (2.801) BS04 OHX ? GO:0000027 ... P41805 25209664
    156382 4u4r:m1 (2.801) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156383 4u4r:m1 (2.801) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156384 4u4r:m1 (2.801) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    156385 4u4r:m3 (2.801) BS01 rna ? GO:0002181 ... Q12690 25209664
    156386 4u4r:m3 (2.801) BS02 rna ? GO:0002181 ... Q12690 25209664
    156387 4u4r:m4 (2.801) BS01 rna ? GO:0000027 ... P36105 25209664
    156388 4u4r:m5 (2.801) BS01 rna ? GO:0002181 ... P05748 25209664
    156389 4u4r:m5 (2.801) BS02 rna ? GO:0002181 ... P05748 25209664
    156390 4u4r:m6 (2.801) BS01 rna ? GO:0000470 ... P26784 25209664
    156391 4u4r:m6 (2.801) BS02 MG ? GO:0000470 ... P26784 25209664
    156392 4u4r:m7 (2.801) BS01 rna ? GO:0000448 ... P05740 25209664
    156393 4u4r:m7 (2.801) BS02 rna ? GO:0000448 ... P05740 25209664
    156394 4u4r:m7 (2.801) BS03 OHX ? GO:0000448 ... P05740 25209664
    156395 4u4r:m8 (2.801) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156396 4u4r:m9 (2.801) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156397 4u4r:m9 (2.801) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156398 4u4r:n0 (2.801) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156399 4u4r:n0 (2.801) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156400 4u4r:n1 (2.801) BS01 rna ? GO:0002181 ... Q02753 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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