Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156001 4u4q:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    156002 4u4q:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    156003 4u4q:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    156004 4u4q:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    156005 4u4q:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    156006 4u4q:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    156007 4u4q:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156008 4u4q:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    156009 4u4q:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    156010 4u4q:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    156011 4u4q:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    156012 4u4q:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    156013 4u4q:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    156014 4u4q:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156015 4u4q:O1 (3.0) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    156016 4u4q:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    156017 4u4q:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    156018 4u4q:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    156019 4u4q:O4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    156020 4u4q:O4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    156021 4u4q:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156022 4u4q:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156023 4u4q:O6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    156024 4u4q:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    156025 4u4q:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    156026 4u4q:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    156027 4u4q:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    156028 4u4q:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    156029 4u4q:O7 (3.0) BS06 OHX ? GO:0000448 ... P49166 25209664
    156030 4u4q:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    156031 4u4q:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    156032 4u4q:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    156033 4u4q:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156034 4u4q:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156035 4u4q:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156036 4u4q:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156037 4u4q:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156038 4u4q:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156039 4u4q:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    156040 4u4q:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    156041 4u4q:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    156042 4u4q:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    156043 4u4q:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    156044 4u4q:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156045 4u4q:S5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    156046 4u4q:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156047 4u4q:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    156048 4u4q:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156049 4u4q:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156050 4u4q:S8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    156051 4u4q:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    156052 4u4q:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    156053 4u4q:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    156054 4u4q:SM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    156055 4u4q:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    156056 4u4q:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    156057 4u4q:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    156058 4u4q:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156059 4u4q:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    156060 4u4q:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    156061 4u4q:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    156062 4u4q:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    156063 4u4q:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    156064 4u4q:c5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    156065 4u4q:c5 (3.0) BS02 OHX ? GO:0000028 ... Q01855 25209664
    156066 4u4q:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    156067 4u4q:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    156068 4u4q:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    156069 4u4q:c9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    156070 4u4q:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    156071 4u4q:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    156072 4u4q:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    156073 4u4q:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    156074 4u4q:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156075 4u4q:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    156076 4u4q:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    156077 4u4q:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    156078 4u4q:d6 (3.0) BS03 MG ? GO:0003735 ... P39939 25209664
    156079 4u4q:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    156080 4u4q:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    156081 4u4q:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    156082 4u4q:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    156083 4u4q:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    156084 4u4q:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    156085 4u4q:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    156086 4u4q:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    156087 4u4q:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    156088 4u4q:l3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    156089 4u4q:l3 (3.0) BS03 MG ? GO:0000027 ... P14126 25209664
    156090 4u4q:l3 (3.0) BS04 OHX ? GO:0000027 ... P14126 25209664
    156091 4u4q:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    156092 4u4q:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    156093 4u4q:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    156094 4u4q:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    156095 4u4q:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    156096 4u4q:l5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    156097 4u4q:l5 (3.0) BS03 OHX ? GO:0000027 ... P26321 25209664
    156098 4u4q:l5 (3.0) BS04 OHX ? GO:0000027 ... P26321 25209664
    156099 4u4q:l6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    156100 4u4q:l7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    156101 4u4q:l7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    156102 4u4q:l8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    156103 4u4q:l8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    156104 4u4q:l9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    156105 4u4q:l9 (3.0) BS02 OHX ? GO:0002181 ... P05738 25209664
    156106 4u4q:m0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    156107 4u4q:m0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    156108 4u4q:m0 (3.0) BS03 OHX ? GO:0000027 ... P41805 25209664
    156109 4u4q:m0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    156110 4u4q:m1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    156111 4u4q:m1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    156112 4u4q:m1 (3.0) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    156113 4u4q:m3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    156114 4u4q:m3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    156115 4u4q:m4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    156116 4u4q:m5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    156117 4u4q:m5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    156118 4u4q:m5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    156119 4u4q:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    156120 4u4q:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    156121 4u4q:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    156122 4u4q:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    156123 4u4q:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    156124 4u4q:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    156125 4u4q:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    156126 4u4q:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    156127 4u4q:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    156128 4u4q:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    156129 4u4q:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    156130 4u4q:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    156131 4u4q:n1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    156132 4u4q:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    156133 4u4q:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    156134 4u4q:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    156135 4u4q:n3 (3.0) BS03 MG ? GO:0002181 ... P0CX41 25209664
    156136 4u4q:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    156137 4u4q:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    156138 4u4q:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    156139 4u4q:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    156140 4u4q:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    156141 4u4q:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    156142 4u4q:n6 (3.0) BS03 OHX ? GO:0002181 ... P05743 25209664
    156143 4u4q:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    156144 4u4q:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    156145 4u4q:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    156146 4u4q:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    156147 4u4q:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    156148 4u4q:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    156149 4u4q:o1 (3.0) BS02 MG ? GO:0002181 ... P0C2H8 25209664
    156150 4u4q:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    156151 4u4q:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    156152 4u4q:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    156153 4u4q:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    156154 4u4q:o4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    156155 4u4q:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    156156 4u4q:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    156157 4u4q:o6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    156158 4u4q:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    156159 4u4q:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    156160 4u4q:o7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    156161 4u4q:o7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    156162 4u4q:o7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    156163 4u4q:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    156164 4u4q:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    156165 4u4q:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    156166 4u4q:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    156167 4u4q:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    156168 4u4q:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    156169 4u4q:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    156170 4u4q:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    156171 4u4q:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    156172 4u4q:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    156173 4u4q:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    156174 4u4q:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    156175 4u4q:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    156176 4u4q:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    156177 4u4q:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    156178 4u4q:s1 (3.0) BS02 OHX ? GO:0000462 ... P33442 25209664
    156179 4u4q:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    156180 4u4q:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    156181 4u4q:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    156182 4u4q:s4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    156183 4u4q:s5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    156184 4u4q:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    156185 4u4q:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    156186 4u4q:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    156187 4u4q:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    156188 4u4q:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    156189 4u4q:s9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    156190 4u4q:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    156191 4u4q:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    156192 4u4q:sM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    156193 4u4q:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    156194 4u4r:C0 (2.801) BS01 rna ? GO:0000054 ... Q08745 25209664
    156195 4u4r:C1 (2.801) BS01 rna ? GO:0000028 ... P0CX47 25209664
    156196 4u4r:C2 (2.801) BS01 rna ? GO:0000028 ... P48589 25209664
    156197 4u4r:C3 (2.801) BS01 rna ? GO:0000462 ... P05756 25209664
    156198 4u4r:C3 (2.801) BS02 rna ? GO:0000462 ... P05756 25209664
    156199 4u4r:C3 (2.801) BS03 OHX ? GO:0000462 ... P05756 25209664
    156200 4u4r:C4 (2.801) BS01 rna ? GO:0000028 ... P06367 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417