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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155401 4u4n:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    155402 4u4n:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    155403 4u4n:D9 (3.1) BS03 OHX ? GO:0002181 ... P41057 25209664
    155404 4u4n:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    155405 4u4n:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    155406 4u4n:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    155407 4u4n:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    155408 4u4n:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    155409 4u4n:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    155410 4u4n:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    155411 4u4n:L3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    155412 4u4n:L3 (3.1) BS03 OHX ? GO:0000027 ... P14126 25209664
    155413 4u4n:L3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    155414 4u4n:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    155415 4u4n:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    155416 4u4n:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    155417 4u4n:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    155418 4u4n:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    155419 4u4n:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    155420 4u4n:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    155421 4u4n:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    155422 4u4n:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    155423 4u4n:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    155424 4u4n:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    155425 4u4n:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    155426 4u4n:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    155427 4u4n:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 25209664
    155428 4u4n:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    155429 4u4n:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    155430 4u4n:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    155431 4u4n:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    155432 4u4n:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    155433 4u4n:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    155434 4u4n:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    155435 4u4n:M5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    155436 4u4n:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    155437 4u4n:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    155438 4u4n:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    155439 4u4n:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 25209664
    155440 4u4n:M7 (3.1) BS04 OHX ? GO:0000448 ... P05740 25209664
    155441 4u4n:M7 (3.1) BS05 OHX ? GO:0000448 ... P05740 25209664
    155442 4u4n:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    155443 4u4n:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    155444 4u4n:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    155445 4u4n:M9 (3.1) BS03 MG ? GO:0002181 ... P0CX82 25209664
    155446 4u4n:M9 (3.1) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    155447 4u4n:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    155448 4u4n:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    155449 4u4n:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    155450 4u4n:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    155451 4u4n:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    155452 4u4n:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    155453 4u4n:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    155454 4u4n:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    155455 4u4n:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    155456 4u4n:N4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    155457 4u4n:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    155458 4u4n:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    155459 4u4n:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    155460 4u4n:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    155461 4u4n:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    155462 4u4n:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    155463 4u4n:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 25209664
    155464 4u4n:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 25209664
    155465 4u4n:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    155466 4u4n:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    155467 4u4n:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    155468 4u4n:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    155469 4u4n:O1 (3.1) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    155470 4u4n:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    155471 4u4n:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    155472 4u4n:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 25209664
    155473 4u4n:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 25209664
    155474 4u4n:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 25209664
    155475 4u4n:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    155476 4u4n:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    155477 4u4n:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 25209664
    155478 4u4n:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    155479 4u4n:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    155480 4u4n:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    155481 4u4n:O7 (3.1) BS04 OHX ? GO:0000448 ... P49166 25209664
    155482 4u4n:O7 (3.1) BS05 ZN ? GO:0000448 ... P49166 25209664
    155483 4u4n:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 25209664
    155484 4u4n:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    155485 4u4n:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    155486 4u4n:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    155487 4u4n:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    155488 4u4n:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    155489 4u4n:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    155490 4u4n:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    155491 4u4n:Q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    155492 4u4n:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    155493 4u4n:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    155494 4u4n:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    155495 4u4n:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    155496 4u4n:S1 (3.1) BS02 OHX ? GO:0000462 ... P33442 25209664
    155497 4u4n:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    155498 4u4n:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    155499 4u4n:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    155500 4u4n:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 25209664
    155501 4u4n:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    155502 4u4n:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    155503 4u4n:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    155504 4u4n:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    155505 4u4n:S8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    155506 4u4n:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    155507 4u4n:S9 (3.1) BS02 OHX ? GO:0000462 ... O13516 25209664
    155508 4u4n:SM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    155509 4u4n:SM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    155510 4u4n:SR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    155511 4u4n:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    155512 4u4n:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    155513 4u4n:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    155514 4u4n:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    155515 4u4n:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    155516 4u4n:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    155517 4u4n:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    155518 4u4n:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    155519 4u4n:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    155520 4u4n:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 25209664
    155521 4u4n:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    155522 4u4n:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    155523 4u4n:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    155524 4u4n:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    155525 4u4n:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 25209664
    155526 4u4n:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    155527 4u4n:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    155528 4u4n:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    155529 4u4n:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    155530 4u4n:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    155531 4u4n:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    155532 4u4n:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    155533 4u4n:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    155534 4u4n:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    155535 4u4n:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    155536 4u4n:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    155537 4u4n:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    155538 4u4n:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    155539 4u4n:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    155540 4u4n:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    155541 4u4n:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    155542 4u4n:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    155543 4u4n:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    155544 4u4n:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 25209664
    155545 4u4n:l3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    155546 4u4n:l3 (3.1) BS05 OHX ? GO:0000027 ... P14126 25209664
    155547 4u4n:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    155548 4u4n:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    155549 4u4n:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    155550 4u4n:l4 (3.1) BS04 OHX ? GO:0002181 ... P10664 25209664
    155551 4u4n:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    155552 4u4n:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    155553 4u4n:l5 (3.1) BS03 MG ? GO:0000027 ... P26321 25209664
    155554 4u4n:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 25209664
    155555 4u4n:l5 (3.1) BS05 OHX ? GO:0000027 ... P26321 25209664
    155556 4u4n:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    155557 4u4n:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    155558 4u4n:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    155559 4u4n:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    155560 4u4n:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    155561 4u4n:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    155562 4u4n:l9 (3.1) BS02 OHX ? GO:0002181 ... P05738 25209664
    155563 4u4n:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    155564 4u4n:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    155565 4u4n:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 25209664
    155566 4u4n:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 25209664
    155567 4u4n:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    155568 4u4n:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    155569 4u4n:m1 (3.1) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    155570 4u4n:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    155571 4u4n:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    155572 4u4n:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    155573 4u4n:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 25209664
    155574 4u4n:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 25209664
    155575 4u4n:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 25209664
    155576 4u4n:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    155577 4u4n:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 25209664
    155578 4u4n:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    155579 4u4n:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    155580 4u4n:m7 (3.1) BS03 OHX ? GO:0000448 ... P05740 25209664
    155581 4u4n:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    155582 4u4n:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    155583 4u4n:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    155584 4u4n:m9 (3.1) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    155585 4u4n:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    155586 4u4n:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    155587 4u4n:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    155588 4u4n:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    155589 4u4n:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    155590 4u4n:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    155591 4u4n:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    155592 4u4n:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    155593 4u4n:n3 (3.1) BS03 OHX ? GO:0002181 ... P0CX41 25209664
    155594 4u4n:n3 (3.1) BS04 OHX ? GO:0002181 ... P0CX41 25209664
    155595 4u4n:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    155596 4u4n:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    155597 4u4n:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    155598 4u4n:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    155599 4u4n:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    155600 4u4n:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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