Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155201 4u3u:Q0 (2.9) BS01 rna ? GO:0003735 ... P0CH08 25209664
    155202 4u3u:Q0 (2.9) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    155203 4u3u:Q2 (2.9) BS01 rna ? GO:0002181 ... P0CX27 25209664
    155204 4u3u:Q2 (2.9) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    155205 4u3u:Q2 (2.9) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    155206 4u3u:Q3 (2.9) BS01 rna ? GO:0002181 ... P0CX25 25209664
    155207 4u3u:Q3 (2.9) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    155208 4u3u:S0 (2.9) BS01 rna ? GO:0000028 ... P32905 25209664
    155209 4u3u:S1 (2.9) BS01 rna ? GO:0000462 ... P33442 25209664
    155210 4u3u:S1 (2.9) BS02 OHX ? GO:0000462 ... P33442 25209664
    155211 4u3u:S2 (2.9) BS01 rna ? GO:0000054 ... P25443 25209664
    155212 4u3u:S3 (2.9) BS01 rna ? GO:0000054 ... P05750 25209664
    155213 4u3u:S4 (2.9) BS01 rna ? GO:0002181 ... P0CX35 25209664
    155214 4u3u:S5 (2.9) BS01 rna ? GO:0000028 ... P26783 25209664
    155215 4u3u:S6 (2.9) BS01 rna ? GO:0000462 ... P0CX37 25209664
    155216 4u3u:S7 (2.9) BS01 rna ? GO:0002181 ... P26786 25209664
    155217 4u3u:S8 (2.9) BS01 rna ? GO:0000462 ... P0CX39 25209664
    155218 4u3u:S8 (2.9) BS02 rna ? GO:0000462 ... P0CX39 25209664
    155219 4u3u:S9 (2.9) BS01 rna ? GO:0000462 ... O13516 25209664
    155220 4u3u:S9 (2.9) BS02 OHX ? GO:0000462 ... O13516 25209664
    155221 4u3u:SM (2.9) BS01 rna ? GO:0000723 ... P39015 25209664
    155222 4u3u:SM (2.9) BS02 rna ? GO:0000723 ... P39015 25209664
    155223 4u3u:SM (2.9) BS03 MG ? GO:0000723 ... P39015 25209664
    155224 4u3u:SR (2.9) BS01 rna ? GO:0001965 ... P38011 25209664
    155225 4u3u:SR (2.9) BS02 OHX ? GO:0001965 ... P38011 25209664
    155226 4u3u:c0 (2.9) BS01 rna ? GO:0000054 ... Q08745 25209664
    155227 4u3u:c1 (2.9) BS01 rna ? GO:0000028 ... P0CX47 25209664
    155228 4u3u:c2 (2.9) BS01 rna ? GO:0000028 ... P48589 25209664
    155229 4u3u:c3 (2.9) BS01 rna ? GO:0000462 ... P05756 25209664
    155230 4u3u:c3 (2.9) BS02 rna ? GO:0000462 ... P05756 25209664
    155231 4u3u:c3 (2.9) BS03 OHX ? GO:0000462 ... P05756 25209664
    155232 4u3u:c4 (2.9) BS01 rna ? GO:0000028 ... P06367 25209664
    155233 4u3u:c5 (2.9) BS01 rna ? GO:0000028 ... Q01855 25209664
    155234 4u3u:c5 (2.9) BS02 OHX ? GO:0000028 ... Q01855 25209664
    155235 4u3u:c6 (2.9) BS01 rna ? GO:0000462 ... P0CX51 25209664
    155236 4u3u:c7 (2.9) BS01 rna ? GO:0000028 ... P02407 25209664
    155237 4u3u:c8 (2.9) BS01 rna ? GO:0000054 ... P0CX55 25209664
    155238 4u3u:c9 (2.9) BS01 rna ? GO:0000028 ... P07280 25209664
    155239 4u3u:c9 (2.9) BS02 MG ? GO:0000028 ... P07280 25209664
    155240 4u3u:d0 (2.9) BS01 rna ? GO:0000462 ... P38701 25209664
    155241 4u3u:d2 (2.9) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    155242 4u3u:d3 (2.9) BS01 rna ? GO:0000462 ... P0CX29 25209664
    155243 4u3u:d4 (2.9) BS01 rna ? GO:0000462 ... P0CX31 25209664
    155244 4u3u:d5 (2.9) BS01 rna ? GO:0002181 ... Q3E792 25209664
    155245 4u3u:d6 (2.9) BS01 rna ? GO:0003735 ... P39939 25209664
    155246 4u3u:d6 (2.9) BS02 ZN ? GO:0003735 ... P39939 25209664
    155247 4u3u:d7 (2.9) BS01 rna ? GO:0000028 ... P35997 25209664
    155248 4u3u:d8 (2.9) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    155249 4u3u:d9 (2.9) BS01 rna ? GO:0002181 ... P41057 25209664
    155250 4u3u:d9 (2.9) BS02 ZN ? GO:0002181 ... P41057 25209664
    155251 4u3u:e0 (2.9) BS01 rna ? GO:0002181 ... P0CX33 25209664
    155252 4u3u:e1 (2.9) BS01 rna ? GO:0003735 ... P05759 25209664
    155253 4u3u:l2 (2.9) BS01 rna ? GO:0002181 ... P0CX45 25209664
    155254 4u3u:l2 (2.9) BS02 rna ? GO:0002181 ... P0CX45 25209664
    155255 4u3u:l3 (2.9) BS01 rna ? GO:0000027 ... P14126 25209664
    155256 4u3u:l3 (2.9) BS02 MG ? GO:0000027 ... P14126 25209664
    155257 4u3u:l3 (2.9) BS03 MG ? GO:0000027 ... P14126 25209664
    155258 4u3u:l3 (2.9) BS04 OHX ? GO:0000027 ... P14126 25209664
    155259 4u3u:l4 (2.9) BS01 rna ? GO:0002181 ... P10664 25209664
    155260 4u3u:l4 (2.9) BS02 rna ? GO:0002181 ... P10664 25209664
    155261 4u3u:l4 (2.9) BS03 OHX ? GO:0002181 ... P10664 25209664
    155262 4u3u:l4 (2.9) BS04 OHX ? GO:0002181 ... P10664 25209664
    155263 4u3u:l5 (2.9) BS01 rna ? GO:0000027 ... P26321 25209664
    155264 4u3u:l5 (2.9) BS02 rna ? GO:0000027 ... P26321 25209664
    155265 4u3u:l5 (2.9) BS03 OHX ? GO:0000027 ... P26321 25209664
    155266 4u3u:l5 (2.9) BS04 OHX ? GO:0000027 ... P26321 25209664
    155267 4u3u:l6 (2.9) BS01 rna ? GO:0000027 ... Q02326 25209664
    155268 4u3u:l7 (2.9) BS01 rna ? GO:0000463 ... P05737 25209664
    155269 4u3u:l7 (2.9) BS02 rna ? GO:0000463 ... P05737 25209664
    155270 4u3u:l8 (2.9) BS01 rna ? GO:0000470 ... P17076 25209664
    155271 4u3u:l8 (2.9) BS02 rna ? GO:0000470 ... P17076 25209664
    155272 4u3u:l9 (2.9) BS01 rna ? GO:0002181 ... P05738 25209664
    155273 4u3u:m0 (2.9) BS01 rna ? GO:0000027 ... P41805 25209664
    155274 4u3u:m0 (2.9) BS02 rna ? GO:0000027 ... P41805 25209664
    155275 4u3u:m0 (2.9) BS03 OHX ? GO:0000027 ... P41805 25209664
    155276 4u3u:m0 (2.9) BS04 OHX ? GO:0000027 ... P41805 25209664
    155277 4u3u:m1 (2.9) BS01 rna ? GO:0000027 ... Q3E757 25209664
    155278 4u3u:m1 (2.9) BS02 rna ? GO:0000027 ... Q3E757 25209664
    155279 4u3u:m3 (2.9) BS01 rna ? GO:0002181 ... Q12690 25209664
    155280 4u3u:m3 (2.9) BS02 rna ? GO:0002181 ... Q12690 25209664
    155281 4u3u:m4 (2.9) BS01 rna ? GO:0000027 ... P36105 25209664
    155282 4u3u:m5 (2.9) BS01 rna ? GO:0002181 ... P05748 25209664
    155283 4u3u:m5 (2.9) BS02 rna ? GO:0002181 ... P05748 25209664
    155284 4u3u:m5 (2.9) BS03 OHX ? GO:0002181 ... P05748 25209664
    155285 4u3u:m6 (2.9) BS01 rna ? GO:0000470 ... P26784 25209664
    155286 4u3u:m6 (2.9) BS02 MG ? GO:0000470 ... P26784 25209664
    155287 4u3u:m7 (2.9) BS01 rna ? GO:0000448 ... P05740 25209664
    155288 4u3u:m7 (2.9) BS02 rna ? GO:0000448 ... P05740 25209664
    155289 4u3u:m7 (2.9) BS03 OHX ? GO:0000448 ... P05740 25209664
    155290 4u3u:m8 (2.9) BS01 rna ? GO:0002181 ... P0CX49 25209664
    155291 4u3u:m9 (2.9) BS01 rna ? GO:0002181 ... P0CX82 25209664
    155292 4u3u:m9 (2.9) BS02 rna ? GO:0002181 ... P0CX82 25209664
    155293 4u3u:n0 (2.9) BS01 rna ? GO:0002181 ... P0CX23 25209664
    155294 4u3u:n0 (2.9) BS02 rna ? GO:0002181 ... P0CX23 25209664
    155295 4u3u:n1 (2.9) BS01 rna ? GO:0002181 ... Q02753 25209664
    155296 4u3u:n1 (2.9) BS02 rna ? GO:0002181 ... Q02753 25209664
    155297 4u3u:n1 (2.9) BS03 OHX ? GO:0002181 ... Q02753 25209664
    155298 4u3u:n2 (2.9) BS01 rna ? GO:0002181 ... P05749 25209664
    155299 4u3u:n3 (2.9) BS01 rna ? GO:0002181 ... P0CX41 25209664
    155300 4u3u:n3 (2.9) BS02 rna ? GO:0002181 ... P0CX41 25209664
    155301 4u3u:n4 (2.9) BS01 rna ? GO:0002181 ... P04449 25209664
    155302 4u3u:n4 (2.9) BS02 rna ? GO:0002181 ... P04449 25209664
    155303 4u3u:n5 (2.9) BS01 rna ? GO:0000027 ... P04456 25209664
    155304 4u3u:n5 (2.9) BS02 rna ? GO:0000027 ... P04456 25209664
    155305 4u3u:n6 (2.9) BS01 rna ? GO:0002181 ... P05743 25209664
    155306 4u3u:n6 (2.9) BS02 rna ? GO:0002181 ... P05743 25209664
    155307 4u3u:n6 (2.9) BS03 OHX ? GO:0002181 ... P05743 25209664
    155308 4u3u:n7 (2.9) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    155309 4u3u:n8 (2.9) BS01 rna ? GO:0002181 ... P02406 25209664
    155310 4u3u:n8 (2.9) BS02 OHX ? GO:0002181 ... P02406 25209664
    155311 4u3u:n8 (2.9) BS03 MG ? GO:0002181 ... P02406 25209664
    155312 4u3u:n9 (2.9) BS01 rna ? GO:0002181 ... P05747 25209664
    155313 4u3u:n9 (2.9) BS02 OHX ? GO:0002181 ... P05747 25209664
    155314 4u3u:o0 (2.9) BS01 rna ? GO:0002181 ... P14120 25209664
    155315 4u3u:o1 (2.9) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    155316 4u3u:o2 (2.9) BS01 rna ? GO:0002181 ... P38061 25209664
    155317 4u3u:o3 (2.9) BS01 rna ? GO:0000027 ... P05744 25209664
    155318 4u3u:o3 (2.9) BS02 MG ? GO:0000027 ... P05744 25209664
    155319 4u3u:o3 (2.9) BS03 OHX ? GO:0000027 ... P05744 25209664
    155320 4u3u:o4 (2.9) BS01 rna ? GO:0002181 ... P87262 25209664
    155321 4u3u:o4 (2.9) BS02 MG ? GO:0002181 ... P87262 25209664
    155322 4u3u:o5 (2.9) BS01 rna ? GO:0000463 ... P0CX84 25209664
    155323 4u3u:o5 (2.9) BS02 rna ? GO:0000463 ... P0CX84 25209664
    155324 4u3u:o6 (2.9) BS01 rna ? GO:0002181 ... P05745 25209664
    155325 4u3u:o7 (2.9) BS01 rna ? GO:0000448 ... P49166 25209664
    155326 4u3u:o7 (2.9) BS02 rna ? GO:0000448 ... P49166 25209664
    155327 4u3u:o7 (2.9) BS03 OHX ? GO:0000448 ... P49166 25209664
    155328 4u3u:o7 (2.9) BS04 ZN ? GO:0000448 ... P49166 25209664
    155329 4u3u:o7 (2.9) BS05 OHX ? GO:0000448 ... P49166 25209664
    155330 4u3u:o8 (2.9) BS01 rna ? GO:0002181 ... P49167 25209664
    155331 4u3u:o9 (2.9) BS01 rna ? GO:0002181 ... P04650 25209664
    155332 4u3u:o9 (2.9) BS02 rna ? GO:0002181 ... P04650 25209664
    155333 4u3u:o9 (2.9) BS03 OHX ? GO:0002181 ... P04650 25209664
    155334 4u3u:p0 (2.9) BS01 rna ? GO:0000027 ... P05317 25209664
    155335 4u3u:q0 (2.9) BS01 rna ? GO:0003735 ... P0CH08 25209664
    155336 4u3u:q0 (2.9) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    155337 4u3u:q2 (2.9) BS01 rna ? GO:0002181 ... P0CX27 25209664
    155338 4u3u:q2 (2.9) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    155339 4u3u:q2 (2.9) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    155340 4u3u:q3 (2.9) BS01 rna ? GO:0002181 ... P0CX25 25209664
    155341 4u3u:q3 (2.9) BS02 rna ? GO:0002181 ... P0CX25 25209664
    155342 4u3u:q3 (2.9) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    155343 4u3u:s0 (2.9) BS01 rna ? GO:0000028 ... P32905 25209664
    155344 4u3u:s1 (2.9) BS01 rna ? GO:0000462 ... P33442 25209664
    155345 4u3u:s2 (2.9) BS01 rna ? GO:0000054 ... P25443 25209664
    155346 4u3u:s3 (2.9) BS01 rna ? GO:0000054 ... P05750 25209664
    155347 4u3u:s4 (2.9) BS01 rna ? GO:0002181 ... P0CX35 25209664
    155348 4u3u:s4 (2.9) BS02 MG ? GO:0002181 ... P0CX35 25209664
    155349 4u3u:s5 (2.9) BS01 rna ? GO:0000028 ... P26783 25209664
    155350 4u3u:s6 (2.9) BS01 rna ? GO:0000462 ... P0CX37 25209664
    155351 4u3u:s7 (2.9) BS01 rna ? GO:0002181 ... P26786 25209664
    155352 4u3u:s8 (2.9) BS01 rna ? GO:0000462 ... P0CX39 25209664
    155353 4u3u:s8 (2.9) BS02 rna ? GO:0000462 ... P0CX39 25209664
    155354 4u3u:s8 (2.9) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    155355 4u3u:s9 (2.9) BS01 rna ? GO:0000462 ... O13516 25209664
    155356 4u3u:s9 (2.9) BS02 OHX ? GO:0000462 ... O13516 25209664
    155357 4u3u:sM (2.9) BS01 rna ? GO:0000723 ... P39015 25209664
    155358 4u3u:sM (2.9) BS02 rna ? GO:0000723 ... P39015 25209664
    155359 4u3u:sM (2.9) BS03 MG ? GO:0000723 ... P39015 25209664
    155360 4u3u:sR (2.9) BS01 rna ? GO:0001965 ... P38011 25209664
    155361 4u49:B (1.8) BS01 CA 4.2.2.2 GO:0005576 ... Q47465 N/A
    155362 4u4a:A (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    155363 4u4a:B (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    155364 4u4a:C (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    155365 4u4f:A (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    155366 4u4f:B (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    155367 4u4f:C (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    155368 4u4f:D (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    155369 4u4g:A (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    155370 4u4g:B (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    155371 4u4g:C (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    155372 4u4g:D (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    155373 4u4m:A (3.09) BS01 PYR 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    155374 4u4m:B (3.09) BS01 PYR 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    155375 4u4m:C (3.09) BS01 PYR 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    155376 4u4m:D (3.09) BS01 PYR 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    155377 4u4n:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    155378 4u4n:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    155379 4u4n:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    155380 4u4n:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    155381 4u4n:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    155382 4u4n:C3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    155383 4u4n:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    155384 4u4n:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 25209664
    155385 4u4n:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 25209664
    155386 4u4n:C5 (3.1) BS03 OHX ? GO:0000028 ... Q01855 25209664
    155387 4u4n:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    155388 4u4n:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    155389 4u4n:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    155390 4u4n:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 25209664
    155391 4u4n:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    155392 4u4n:D1 (3.1) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    155393 4u4n:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    155394 4u4n:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    155395 4u4n:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    155396 4u4n:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    155397 4u4n:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    155398 4u4n:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    155399 4u4n:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    155400 4u4n:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417