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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155001 4u3n:l5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    155002 4u3n:l5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    155003 4u3n:l5 (3.2) BS03 MG ? GO:0000027 ... P26321 25209664
    155004 4u3n:l5 (3.2) BS04 OHX ? GO:0000027 ... P26321 25209664
    155005 4u3n:l5 (3.2) BS05 OHX ? GO:0000027 ... P26321 25209664
    155006 4u3n:l6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    155007 4u3n:l7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    155008 4u3n:l7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    155009 4u3n:l8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    155010 4u3n:l8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    155011 4u3n:l9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    155012 4u3n:m0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    155013 4u3n:m0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    155014 4u3n:m0 (3.2) BS03 OHX ? GO:0000027 ... P41805 25209664
    155015 4u3n:m0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    155016 4u3n:m1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    155017 4u3n:m1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    155018 4u3n:m3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    155019 4u3n:m3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    155020 4u3n:m4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    155021 4u3n:m5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    155022 4u3n:m5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    155023 4u3n:m6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    155024 4u3n:m6 (3.2) BS02 MG ? GO:0000470 ... P26784 25209664
    155025 4u3n:m7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    155026 4u3n:m7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    155027 4u3n:m8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    155028 4u3n:m9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    155029 4u3n:m9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    155030 4u3n:n0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    155031 4u3n:n0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    155032 4u3n:n1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    155033 4u3n:n1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    155034 4u3n:n1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    155035 4u3n:n2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    155036 4u3n:n3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    155037 4u3n:n3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    155038 4u3n:n4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    155039 4u3n:n4 (3.2) BS02 rna ? GO:0002181 ... P04449 25209664
    155040 4u3n:n5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    155041 4u3n:n5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    155042 4u3n:n6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    155043 4u3n:n6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    155044 4u3n:n7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    155045 4u3n:n8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    155046 4u3n:n9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    155047 4u3n:n9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    155048 4u3n:o0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    155049 4u3n:o1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    155050 4u3n:o2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    155051 4u3n:o3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    155052 4u3n:o3 (3.2) BS02 MG ? GO:0000027 ... P05744 25209664
    155053 4u3n:o3 (3.2) BS03 OHX ? GO:0000027 ... P05744 25209664
    155054 4u3n:o4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    155055 4u3n:o5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    155056 4u3n:o5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    155057 4u3n:o6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    155058 4u3n:o7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    155059 4u3n:o7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    155060 4u3n:o7 (3.2) BS03 ZN ? GO:0000448 ... P49166 25209664
    155061 4u3n:o8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    155062 4u3n:o9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    155063 4u3n:o9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    155064 4u3n:p0 (3.2) BS01 rna ? GO:0000027 ... P05317 25209664
    155065 4u3n:q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    155066 4u3n:q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    155067 4u3n:q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    155068 4u3n:q2 (3.2) BS02 A ? GO:0002181 ... P0CX27 25209664
    155069 4u3n:q2 (3.2) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    155070 4u3n:q2 (3.2) BS04 C ? GO:0002181 ... P0CX27 25209664
    155071 4u3n:q2 (3.2) BS05 OHX ? GO:0002181 ... P0CX27 25209664
    155072 4u3n:q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    155073 4u3n:q3 (3.2) BS02 rna ? GO:0002181 ... P0CX25 25209664
    155074 4u3n:q3 (3.2) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    155075 4u3n:s0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    155076 4u3n:s1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    155077 4u3n:s1 (3.2) BS02 rna ? GO:0000462 ... P33442 25209664
    155078 4u3n:s1 (3.2) BS03 OHX ? GO:0000462 ... P33442 25209664
    155079 4u3n:s1 (3.2) BS04 OHX ? GO:0000462 ... P33442 25209664
    155080 4u3n:s2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    155081 4u3n:s3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    155082 4u3n:s4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    155083 4u3n:s5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    155084 4u3n:s6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    155085 4u3n:s7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    155086 4u3n:s8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    155087 4u3n:s8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    155088 4u3n:s9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    155089 4u3n:sM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    155090 4u3n:sM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    155091 4u3n:sR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    155092 4u3n:sR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    155093 4u3u:C0 (2.9) BS01 rna ? GO:0000054 ... Q08745 25209664
    155094 4u3u:C1 (2.9) BS01 rna ? GO:0000028 ... P0CX47 25209664
    155095 4u3u:C2 (2.9) BS01 rna ? GO:0000028 ... P48589 25209664
    155096 4u3u:C3 (2.9) BS01 rna ? GO:0000462 ... P05756 25209664
    155097 4u3u:C4 (2.9) BS01 rna ? GO:0000028 ... P06367 25209664
    155098 4u3u:C5 (2.9) BS01 rna ? GO:0000028 ... Q01855 25209664
    155099 4u3u:C5 (2.9) BS02 rna ? GO:0000028 ... Q01855 25209664
    155100 4u3u:C5 (2.9) BS03 OHX ? GO:0000028 ... Q01855 25209664
    155101 4u3u:C6 (2.9) BS01 rna ? GO:0000462 ... P0CX51 25209664
    155102 4u3u:C7 (2.9) BS01 rna ? GO:0000028 ... P02407 25209664
    155103 4u3u:C8 (2.9) BS01 rna ? GO:0000054 ... P0CX55 25209664
    155104 4u3u:C8 (2.9) BS02 MG ? GO:0000054 ... P0CX55 25209664
    155105 4u3u:C8 (2.9) BS03 OHX ? GO:0000054 ... P0CX55 25209664
    155106 4u3u:C9 (2.9) BS01 rna ? GO:0000028 ... P07280 25209664
    155107 4u3u:D0 (2.9) BS01 rna ? GO:0000462 ... P38701 25209664
    155108 4u3u:D2 (2.9) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    155109 4u3u:D3 (2.9) BS01 rna ? GO:0000462 ... P0CX29 25209664
    155110 4u3u:D4 (2.9) BS01 rna ? GO:0000462 ... P0CX31 25209664
    155111 4u3u:D5 (2.9) BS01 rna ? GO:0002181 ... Q3E792 25209664
    155112 4u3u:D6 (2.9) BS01 rna ? GO:0003735 ... P39939 25209664
    155113 4u3u:D6 (2.9) BS02 ZN ? GO:0003735 ... P39939 25209664
    155114 4u3u:D7 (2.9) BS01 rna ? GO:0000028 ... P35997 25209664
    155115 4u3u:D8 (2.9) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    155116 4u3u:D9 (2.9) BS01 rna ? GO:0002181 ... P41057 25209664
    155117 4u3u:D9 (2.9) BS02 ZN ? GO:0002181 ... P41057 25209664
    155118 4u3u:D9 (2.9) BS03 OHX ? GO:0002181 ... P41057 25209664
    155119 4u3u:E0 (2.9) BS01 rna ? GO:0002181 ... P0CX33 25209664
    155120 4u3u:E1 (2.9) BS01 rna ? GO:0003735 ... P05759 25209664
    155121 4u3u:E1 (2.9) BS02 ZN ? GO:0003735 ... P05759 25209664
    155122 4u3u:L2 (2.9) BS01 rna ? GO:0002181 ... P0CX45 25209664
    155123 4u3u:L2 (2.9) BS02 rna ? GO:0002181 ... P0CX45 25209664
    155124 4u3u:L2 (2.9) BS03 MG ? GO:0002181 ... P0CX45 25209664
    155125 4u3u:L3 (2.9) BS01 rna ? GO:0000027 ... P14126 25209664
    155126 4u3u:L3 (2.9) BS02 OHX ? GO:0000027 ... P14126 25209664
    155127 4u3u:L4 (2.9) BS01 rna ? GO:0002181 ... P10664 25209664
    155128 4u3u:L4 (2.9) BS02 rna ? GO:0002181 ... P10664 25209664
    155129 4u3u:L4 (2.9) BS03 OHX ? GO:0002181 ... P10664 25209664
    155130 4u3u:L5 (2.9) BS01 rna ? GO:0000027 ... P26321 25209664
    155131 4u3u:L5 (2.9) BS02 rna ? GO:0000027 ... P26321 25209664
    155132 4u3u:L6 (2.9) BS01 rna ? GO:0000027 ... Q02326 25209664
    155133 4u3u:L6 (2.9) BS02 MG ? GO:0000027 ... Q02326 25209664
    155134 4u3u:L7 (2.9) BS01 rna ? GO:0000463 ... P05737 25209664
    155135 4u3u:L7 (2.9) BS02 rna ? GO:0000463 ... P05737 25209664
    155136 4u3u:L7 (2.9) BS03 OHX ? GO:0000463 ... P05737 25209664
    155137 4u3u:L8 (2.9) BS01 rna ? GO:0000470 ... P17076 25209664
    155138 4u3u:L8 (2.9) BS02 rna ? GO:0000470 ... P17076 25209664
    155139 4u3u:L9 (2.9) BS01 rna ? GO:0002181 ... P05738 25209664
    155140 4u3u:M0 (2.9) BS01 rna ? GO:0000027 ... P41805 25209664
    155141 4u3u:M0 (2.9) BS02 rna ? GO:0000027 ... P41805 25209664
    155142 4u3u:M0 (2.9) BS03 MG ? GO:0000027 ... P41805 25209664
    155143 4u3u:M1 (2.9) BS01 rna ? GO:0000027 ... Q3E757 25209664
    155144 4u3u:M1 (2.9) BS02 rna ? GO:0000027 ... Q3E757 25209664
    155145 4u3u:M3 (2.9) BS01 rna ? GO:0002181 ... Q12690 25209664
    155146 4u3u:M3 (2.9) BS02 rna ? GO:0002181 ... Q12690 25209664
    155147 4u3u:M4 (2.9) BS01 rna ? GO:0000027 ... P36105 25209664
    155148 4u3u:M5 (2.9) BS01 rna ? GO:0002181 ... P05748 25209664
    155149 4u3u:M5 (2.9) BS02 rna ? GO:0002181 ... P05748 25209664
    155150 4u3u:M5 (2.9) BS03 OHX ? GO:0002181 ... P05748 25209664
    155151 4u3u:M6 (2.9) BS01 rna ? GO:0000470 ... P26784 25209664
    155152 4u3u:M7 (2.9) BS01 rna ? GO:0000448 ... P05740 25209664
    155153 4u3u:M7 (2.9) BS02 rna ? GO:0000448 ... P05740 25209664
    155154 4u3u:M7 (2.9) BS03 MG ? GO:0000448 ... P05740 25209664
    155155 4u3u:M8 (2.9) BS01 rna ? GO:0002181 ... P0CX49 25209664
    155156 4u3u:M9 (2.9) BS01 rna ? GO:0002181 ... P0CX82 25209664
    155157 4u3u:M9 (2.9) BS02 rna ? GO:0002181 ... P0CX82 25209664
    155158 4u3u:M9 (2.9) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    155159 4u3u:N0 (2.9) BS01 rna ? GO:0002181 ... P0CX23 25209664
    155160 4u3u:N0 (2.9) BS02 rna ? GO:0002181 ... P0CX23 25209664
    155161 4u3u:N1 (2.9) BS01 rna ? GO:0002181 ... Q02753 25209664
    155162 4u3u:N1 (2.9) BS02 rna ? GO:0002181 ... Q02753 25209664
    155163 4u3u:N1 (2.9) BS03 OHX ? GO:0002181 ... Q02753 25209664
    155164 4u3u:N2 (2.9) BS01 rna ? GO:0002181 ... P05749 25209664
    155165 4u3u:N3 (2.9) BS01 rna ? GO:0002181 ... P0CX41 25209664
    155166 4u3u:N3 (2.9) BS02 rna ? GO:0002181 ... P0CX41 25209664
    155167 4u3u:N4 (2.9) BS01 rna ? GO:0002181 ... P04449 25209664
    155168 4u3u:N4 (2.9) BS02 rna ? GO:0002181 ... P04449 25209664
    155169 4u3u:N5 (2.9) BS01 rna ? GO:0000027 ... P04456 25209664
    155170 4u3u:N5 (2.9) BS02 rna ? GO:0000027 ... P04456 25209664
    155171 4u3u:N6 (2.9) BS01 rna ? GO:0002181 ... P05743 25209664
    155172 4u3u:N6 (2.9) BS02 rna ? GO:0002181 ... P05743 25209664
    155173 4u3u:N7 (2.9) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    155174 4u3u:N8 (2.9) BS01 rna ? GO:0002181 ... P02406 25209664
    155175 4u3u:N8 (2.9) BS02 OHX ? GO:0002181 ... P02406 25209664
    155176 4u3u:N8 (2.9) BS03 MG ? GO:0002181 ... P02406 25209664
    155177 4u3u:N8 (2.9) BS04 MG ? GO:0002181 ... P02406 25209664
    155178 4u3u:N8 (2.9) BS05 MG ? GO:0002181 ... P02406 25209664
    155179 4u3u:N9 (2.9) BS01 rna ? GO:0002181 ... P05747 25209664
    155180 4u3u:N9 (2.9) BS02 OHX ? GO:0002181 ... P05747 25209664
    155181 4u3u:O0 (2.9) BS01 rna ? GO:0002181 ... P14120 25209664
    155182 4u3u:O1 (2.9) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    155183 4u3u:O2 (2.9) BS01 rna ? GO:0002181 ... P38061 25209664
    155184 4u3u:O3 (2.9) BS01 rna ? GO:0000027 ... P05744 25209664
    155185 4u3u:O3 (2.9) BS02 OHX ? GO:0000027 ... P05744 25209664
    155186 4u3u:O4 (2.9) BS01 rna ? GO:0002181 ... P87262 25209664
    155187 4u3u:O4 (2.9) BS02 MG ? GO:0002181 ... P87262 25209664
    155188 4u3u:O5 (2.9) BS01 rna ? GO:0000463 ... P0CX84 25209664
    155189 4u3u:O5 (2.9) BS02 rna ? GO:0000463 ... P0CX84 25209664
    155190 4u3u:O6 (2.9) BS01 rna ? GO:0002181 ... P05745 25209664
    155191 4u3u:O7 (2.9) BS01 rna ? GO:0000448 ... P49166 25209664
    155192 4u3u:O7 (2.9) BS02 rna ? GO:0000448 ... P49166 25209664
    155193 4u3u:O7 (2.9) BS03 OHX ? GO:0000448 ... P49166 25209664
    155194 4u3u:O7 (2.9) BS04 ZN ? GO:0000448 ... P49166 25209664
    155195 4u3u:O7 (2.9) BS05 OHX ? GO:0000448 ... P49166 25209664
    155196 4u3u:O7 (2.9) BS06 OHX ? GO:0000448 ... P49166 25209664
    155197 4u3u:O8 (2.9) BS01 rna ? GO:0002181 ... P49167 25209664
    155198 4u3u:O9 (2.9) BS01 rna ? GO:0002181 ... P04650 25209664
    155199 4u3u:O9 (2.9) BS02 rna ? GO:0002181 ... P04650 25209664
    155200 4u3u:O9 (2.9) BS03 OHX ? GO:0002181 ... P04650 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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