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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154801 4u3m:o7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    154802 4u3m:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    154803 4u3m:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    154804 4u3m:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    154805 4u3m:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    154806 4u3m:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    154807 4u3m:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    154808 4u3m:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    154809 4u3m:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    154810 4u3m:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    154811 4u3m:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    154812 4u3m:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    154813 4u3m:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    154814 4u3m:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    154815 4u3m:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    154816 4u3m:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    154817 4u3m:s1 (3.0) BS02 rna ? GO:0000462 ... P33442 25209664
    154818 4u3m:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    154819 4u3m:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    154820 4u3m:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    154821 4u3m:s5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    154822 4u3m:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    154823 4u3m:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    154824 4u3m:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    154825 4u3m:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    154826 4u3m:s8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    154827 4u3m:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    154828 4u3m:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    154829 4u3m:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    154830 4u3m:sM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    154831 4u3m:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    154832 4u3m:sR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    154833 4u3n:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    154834 4u3n:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    154835 4u3n:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    154836 4u3n:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    154837 4u3n:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    154838 4u3n:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    154839 4u3n:C5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    154840 4u3n:C5 (3.2) BS02 rna ? GO:0000028 ... Q01855 25209664
    154841 4u3n:C5 (3.2) BS03 OHX ? GO:0000028 ... Q01855 25209664
    154842 4u3n:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    154843 4u3n:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    154844 4u3n:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    154845 4u3n:C9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    154846 4u3n:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    154847 4u3n:D1 (3.2) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    154848 4u3n:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    154849 4u3n:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    154850 4u3n:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    154851 4u3n:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    154852 4u3n:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    154853 4u3n:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    154854 4u3n:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    154855 4u3n:D7 (3.2) BS02 ZN ? GO:0000028 ... P35997 25209664
    154856 4u3n:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    154857 4u3n:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    154858 4u3n:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    154859 4u3n:D9 (3.2) BS03 OHX ? GO:0002181 ... P41057 25209664
    154860 4u3n:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    154861 4u3n:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    154862 4u3n:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    154863 4u3n:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    154864 4u3n:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    154865 4u3n:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    154866 4u3n:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    154867 4u3n:L3 (3.2) BS02 OHX ? GO:0000027 ... P14126 25209664
    154868 4u3n:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    154869 4u3n:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    154870 4u3n:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    154871 4u3n:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    154872 4u3n:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    154873 4u3n:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    154874 4u3n:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    154875 4u3n:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    154876 4u3n:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    154877 4u3n:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    154878 4u3n:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    154879 4u3n:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    154880 4u3n:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    154881 4u3n:M0 (3.2) BS03 MG ? GO:0000027 ... P41805 25209664
    154882 4u3n:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    154883 4u3n:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    154884 4u3n:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    154885 4u3n:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    154886 4u3n:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    154887 4u3n:M5 (3.2) BS01 rna ? GO:0002181 ... P05748 25209664
    154888 4u3n:M5 (3.2) BS02 rna ? GO:0002181 ... P05748 25209664
    154889 4u3n:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    154890 4u3n:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    154891 4u3n:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    154892 4u3n:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    154893 4u3n:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    154894 4u3n:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    154895 4u3n:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    154896 4u3n:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    154897 4u3n:M9 (3.2) BS03 MG ? GO:0002181 ... P0CX82 25209664
    154898 4u3n:M9 (3.2) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    154899 4u3n:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    154900 4u3n:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    154901 4u3n:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    154902 4u3n:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    154903 4u3n:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    154904 4u3n:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    154905 4u3n:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    154906 4u3n:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    154907 4u3n:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    154908 4u3n:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    154909 4u3n:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    154910 4u3n:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    154911 4u3n:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    154912 4u3n:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    154913 4u3n:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    154914 4u3n:N8 (3.2) BS02 OHX ? GO:0002181 ... P02406 25209664
    154915 4u3n:N8 (3.2) BS03 MG ? GO:0002181 ... P02406 25209664
    154916 4u3n:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    154917 4u3n:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    154918 4u3n:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    154919 4u3n:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    154920 4u3n:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    154921 4u3n:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    154922 4u3n:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    154923 4u3n:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    154924 4u3n:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    154925 4u3n:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    154926 4u3n:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    154927 4u3n:O6 (3.2) BS01 rna ? GO:0002181 ... P05745 25209664
    154928 4u3n:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    154929 4u3n:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    154930 4u3n:O7 (3.2) BS03 OHX ? GO:0000448 ... P49166 25209664
    154931 4u3n:O7 (3.2) BS04 ZN ? GO:0000448 ... P49166 25209664
    154932 4u3n:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    154933 4u3n:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    154934 4u3n:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    154935 4u3n:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664
    154936 4u3n:Q0 (3.2) BS01 rna ? GO:0003735 ... P0CH08 25209664
    154937 4u3n:Q0 (3.2) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    154938 4u3n:Q2 (3.2) BS01 rna ? GO:0002181 ... P0CX27 25209664
    154939 4u3n:Q2 (3.2) BS02 OHX ? GO:0002181 ... P0CX27 25209664
    154940 4u3n:Q2 (3.2) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    154941 4u3n:Q2 (3.2) BS04 C ? GO:0002181 ... P0CX27 25209664
    154942 4u3n:Q3 (3.2) BS01 rna ? GO:0002181 ... P0CX25 25209664
    154943 4u3n:Q3 (3.2) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    154944 4u3n:S0 (3.2) BS01 rna ? GO:0000028 ... P32905 25209664
    154945 4u3n:S1 (3.2) BS01 rna ? GO:0000462 ... P33442 25209664
    154946 4u3n:S2 (3.2) BS01 rna ? GO:0000054 ... P25443 25209664
    154947 4u3n:S3 (3.2) BS01 rna ? GO:0000054 ... P05750 25209664
    154948 4u3n:S4 (3.2) BS01 rna ? GO:0002181 ... P0CX35 25209664
    154949 4u3n:S5 (3.2) BS01 rna ? GO:0000028 ... P26783 25209664
    154950 4u3n:S6 (3.2) BS01 rna ? GO:0000462 ... P0CX37 25209664
    154951 4u3n:S7 (3.2) BS01 rna ? GO:0002181 ... P26786 25209664
    154952 4u3n:S8 (3.2) BS01 rna ? GO:0000462 ... P0CX39 25209664
    154953 4u3n:S8 (3.2) BS02 rna ? GO:0000462 ... P0CX39 25209664
    154954 4u3n:S8 (3.2) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    154955 4u3n:S9 (3.2) BS01 rna ? GO:0000462 ... O13516 25209664
    154956 4u3n:S9 (3.2) BS02 OHX ? GO:0000462 ... O13516 25209664
    154957 4u3n:SM (3.2) BS01 rna ? GO:0000723 ... P39015 25209664
    154958 4u3n:SM (3.2) BS02 rna ? GO:0000723 ... P39015 25209664
    154959 4u3n:SM (3.2) BS03 MG ? GO:0000723 ... P39015 25209664
    154960 4u3n:SR (3.2) BS01 rna ? GO:0001965 ... P38011 25209664
    154961 4u3n:SR (3.2) BS02 OHX ? GO:0001965 ... P38011 25209664
    154962 4u3n:c0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    154963 4u3n:c1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    154964 4u3n:c2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    154965 4u3n:c3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    154966 4u3n:c3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    154967 4u3n:c4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    154968 4u3n:c5 (3.2) BS01 rna ? GO:0000028 ... Q01855 25209664
    154969 4u3n:c5 (3.2) BS02 OHX ? GO:0000028 ... Q01855 25209664
    154970 4u3n:c6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    154971 4u3n:c7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    154972 4u3n:c8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    154973 4u3n:c9 (3.2) BS01 rna ? GO:0000028 ... P07280 25209664
    154974 4u3n:c9 (3.2) BS02 MG ? GO:0000028 ... P07280 25209664
    154975 4u3n:d0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    154976 4u3n:d2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    154977 4u3n:d3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    154978 4u3n:d3 (3.2) BS02 MG ? GO:0000462 ... P0CX29 25209664
    154979 4u3n:d4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    154980 4u3n:d5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    154981 4u3n:d6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    154982 4u3n:d6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    154983 4u3n:d6 (3.2) BS03 MG ? GO:0003735 ... P39939 25209664
    154984 4u3n:d7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    154985 4u3n:d8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    154986 4u3n:d9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    154987 4u3n:d9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    154988 4u3n:e0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    154989 4u3n:e1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    154990 4u3n:e1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    154991 4u3n:l2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    154992 4u3n:l2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    154993 4u3n:l2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    154994 4u3n:l3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    154995 4u3n:l3 (3.2) BS02 OHX ? GO:0000027 ... P14126 25209664
    154996 4u3n:l3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    154997 4u3n:l4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    154998 4u3n:l4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    154999 4u3n:l4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    155000 4u3n:l4 (3.2) BS04 OHX ? GO:0002181 ... P10664 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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