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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154601 4u3m:L4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    154602 4u3m:L5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    154603 4u3m:L5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    154604 4u3m:L6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    154605 4u3m:L7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    154606 4u3m:L7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    154607 4u3m:L8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    154608 4u3m:L8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    154609 4u3m:L9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    154610 4u3m:M0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    154611 4u3m:M0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    154612 4u3m:M0 (3.0) BS03 MG ? GO:0000027 ... P41805 25209664
    154613 4u3m:M0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    154614 4u3m:M1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    154615 4u3m:M1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    154616 4u3m:M3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    154617 4u3m:M3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    154618 4u3m:M4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    154619 4u3m:M5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    154620 4u3m:M5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    154621 4u3m:M5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    154622 4u3m:M6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    154623 4u3m:M7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    154624 4u3m:M7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    154625 4u3m:M7 (3.0) BS03 MG ? GO:0000448 ... P05740 25209664
    154626 4u3m:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    154627 4u3m:M7 (3.0) BS05 OHX ? GO:0000448 ... P05740 25209664
    154628 4u3m:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    154629 4u3m:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    154630 4u3m:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    154631 4u3m:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    154632 4u3m:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    154633 4u3m:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    154634 4u3m:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    154635 4u3m:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    154636 4u3m:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    154637 4u3m:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    154638 4u3m:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    154639 4u3m:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    154640 4u3m:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    154641 4u3m:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    154642 4u3m:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    154643 4u3m:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    154644 4u3m:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    154645 4u3m:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    154646 4u3m:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    154647 4u3m:N7 (3.0) BS02 OHX ? GO:0002181 ... P0C2H6 25209664
    154648 4u3m:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    154649 4u3m:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    154650 4u3m:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    154651 4u3m:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    154652 4u3m:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    154653 4u3m:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    154654 4u3m:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    154655 4u3m:O1 (3.0) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    154656 4u3m:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    154657 4u3m:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    154658 4u3m:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    154659 4u3m:O4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    154660 4u3m:O4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    154661 4u3m:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    154662 4u3m:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    154663 4u3m:O6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    154664 4u3m:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    154665 4u3m:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    154666 4u3m:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    154667 4u3m:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    154668 4u3m:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    154669 4u3m:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    154670 4u3m:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    154671 4u3m:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    154672 4u3m:O9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    154673 4u3m:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    154674 4u3m:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    154675 4u3m:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    154676 4u3m:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    154677 4u3m:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    154678 4u3m:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    154679 4u3m:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    154680 4u3m:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    154681 4u3m:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    154682 4u3m:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    154683 4u3m:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    154684 4u3m:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    154685 4u3m:S4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    154686 4u3m:S5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    154687 4u3m:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    154688 4u3m:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    154689 4u3m:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    154690 4u3m:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    154691 4u3m:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    154692 4u3m:S9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    154693 4u3m:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    154694 4u3m:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    154695 4u3m:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    154696 4u3m:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    154697 4u3m:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    154698 4u3m:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    154699 4u3m:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    154700 4u3m:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    154701 4u3m:c3 (3.0) BS02 OHX ? GO:0000462 ... P05756 25209664
    154702 4u3m:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    154703 4u3m:c5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    154704 4u3m:c5 (3.0) BS02 OHX ? GO:0000028 ... Q01855 25209664
    154705 4u3m:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    154706 4u3m:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    154707 4u3m:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    154708 4u3m:c9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    154709 4u3m:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    154710 4u3m:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    154711 4u3m:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    154712 4u3m:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    154713 4u3m:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    154714 4u3m:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    154715 4u3m:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    154716 4u3m:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    154717 4u3m:d6 (3.0) BS03 MG ? GO:0003735 ... P39939 25209664
    154718 4u3m:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    154719 4u3m:d7 (3.0) BS02 ZN ? GO:0000028 ... P35997 25209664
    154720 4u3m:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    154721 4u3m:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    154722 4u3m:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    154723 4u3m:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    154724 4u3m:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    154725 4u3m:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    154726 4u3m:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    154727 4u3m:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    154728 4u3m:l3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    154729 4u3m:l3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    154730 4u3m:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    154731 4u3m:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    154732 4u3m:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    154733 4u3m:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    154734 4u3m:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    154735 4u3m:l5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    154736 4u3m:l5 (3.0) BS03 MG ? GO:0000027 ... P26321 25209664
    154737 4u3m:l5 (3.0) BS04 OHX ? GO:0000027 ... P26321 25209664
    154738 4u3m:l5 (3.0) BS05 OHX ? GO:0000027 ... P26321 25209664
    154739 4u3m:l6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    154740 4u3m:l7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    154741 4u3m:l7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    154742 4u3m:l8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    154743 4u3m:l8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    154744 4u3m:l9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    154745 4u3m:m0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    154746 4u3m:m0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    154747 4u3m:m0 (3.0) BS03 OHX ? GO:0000027 ... P41805 25209664
    154748 4u3m:m0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    154749 4u3m:m0 (3.0) BS05 OHX ? GO:0000027 ... P41805 25209664
    154750 4u3m:m1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    154751 4u3m:m1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    154752 4u3m:m1 (3.0) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    154753 4u3m:m3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    154754 4u3m:m3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    154755 4u3m:m4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    154756 4u3m:m5 (3.0) BS01 rna ? GO:0002181 ... P05748 25209664
    154757 4u3m:m5 (3.0) BS02 rna ? GO:0002181 ... P05748 25209664
    154758 4u3m:m5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    154759 4u3m:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    154760 4u3m:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    154761 4u3m:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    154762 4u3m:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    154763 4u3m:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    154764 4u3m:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    154765 4u3m:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    154766 4u3m:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    154767 4u3m:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    154768 4u3m:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    154769 4u3m:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    154770 4u3m:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    154771 4u3m:n1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    154772 4u3m:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    154773 4u3m:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    154774 4u3m:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    154775 4u3m:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    154776 4u3m:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    154777 4u3m:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    154778 4u3m:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    154779 4u3m:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    154780 4u3m:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    154781 4u3m:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    154782 4u3m:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    154783 4u3m:n8 (3.0) BS02 OHX ? GO:0002181 ... P02406 25209664
    154784 4u3m:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    154785 4u3m:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    154786 4u3m:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    154787 4u3m:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    154788 4u3m:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    154789 4u3m:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    154790 4u3m:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    154791 4u3m:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    154792 4u3m:o4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    154793 4u3m:o4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    154794 4u3m:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    154795 4u3m:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    154796 4u3m:o6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    154797 4u3m:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    154798 4u3m:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    154799 4u3m:o7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    154800 4u3m:o7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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