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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154401 4u26:DO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    154402 4u26:DO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    154403 4u26:DP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154404 4u26:DP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154405 4u26:DQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154406 4u26:DR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154407 4u26:DS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    154408 4u26:DT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154409 4u26:DU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    154410 4u26:DV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    154411 4u26:DV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    154412 4u26:DW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154413 4u26:DW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154414 4u26:DX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154415 4u26:DY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154416 4u26:DZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154417 4u26:DZ (2.8) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154418 4u27:AB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154419 4u27:AD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154420 4u27:AE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154421 4u27:AF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    154422 4u27:AG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    154423 4u27:AH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154424 4u27:AI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154425 4u27:AJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154426 4u27:AK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154427 4u27:AK (2.8) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    154428 4u27:AL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154429 4u27:AM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154430 4u27:AN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154431 4u27:AO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154432 4u27:AO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154433 4u27:AP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154434 4u27:AQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154435 4u27:AR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154436 4u27:AS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154437 4u27:AT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154438 4u27:AU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    154439 4u27:B0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154440 4u27:B1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154441 4u27:B2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154442 4u27:B3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154443 4u27:B4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154444 4u27:B4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154445 4u27:B5 (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    154446 4u27:BC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    154447 4u27:BC (2.8) BS02 MG ? GO:0000027 ... P60422 24957822
    154448 4u27:BD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    154449 4u27:BE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    154450 4u27:BF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    154451 4u27:BF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    154452 4u27:BG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154453 4u27:BH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154454 4u27:BH (2.8) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    154455 4u27:BI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154456 4u27:BJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154457 4u27:BK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154458 4u27:BK (2.8) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154459 4u27:BL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    154460 4u27:BM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154461 4u27:BM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154462 4u27:BN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154463 4u27:BO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    154464 4u27:BO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    154465 4u27:BP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154466 4u27:BP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154467 4u27:BQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154468 4u27:BR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154469 4u27:BS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    154470 4u27:BT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154471 4u27:BU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    154472 4u27:BV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    154473 4u27:BV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    154474 4u27:BW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154475 4u27:BW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154476 4u27:BX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154477 4u27:BY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154478 4u27:BZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154479 4u27:BZ (2.8) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154480 4u27:CB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154481 4u27:CB (2.8) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    154482 4u27:CD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154483 4u27:CD (2.8) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    154484 4u27:CE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154485 4u27:CF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    154486 4u27:CG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    154487 4u27:CH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154488 4u27:CI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154489 4u27:CJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154490 4u27:CK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154491 4u27:CL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154492 4u27:CM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154493 4u27:CN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154494 4u27:CO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154495 4u27:CO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154496 4u27:CP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154497 4u27:CQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154498 4u27:CR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154499 4u27:CS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154500 4u27:CT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154501 4u27:CU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    154502 4u27:D0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154503 4u27:D1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154504 4u27:D2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154505 4u27:D3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154506 4u27:D4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154507 4u27:D4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154508 4u27:DC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    154509 4u27:DD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    154510 4u27:DE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    154511 4u27:DF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    154512 4u27:DF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    154513 4u27:DG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154514 4u27:DH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154515 4u27:DI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154516 4u27:DJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154517 4u27:DK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154518 4u27:DL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    154519 4u27:DM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154520 4u27:DM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154521 4u27:DN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154522 4u27:DO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    154523 4u27:DO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    154524 4u27:DP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154525 4u27:DP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154526 4u27:DQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154527 4u27:DR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154528 4u27:DS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    154529 4u27:DT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154530 4u27:DU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    154531 4u27:DV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    154532 4u27:DV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    154533 4u27:DW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154534 4u27:DW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154535 4u27:DX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154536 4u27:DY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154537 4u27:DZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154538 4u2k:B (2.13) BS01 4WR 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    154539 4u2k:D (2.13) BS01 M5F 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    154540 4u2k:D (2.13) BS02 4WR 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    154541 4u2k:F (2.13) BS01 M5F 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    154542 4u2l:A (1.337) BS01 SFD 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 25478834
    154543 4u2s:A (1.12) BS01 FDA 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 25478834
    154544 4u2t:A (1.223) BS01 FAD 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 25478834
    154545 4u2w:A (1.0) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 25546528
    154546 4u2w:A (1.0) BS02 CA 3.4.21.4 GO:0004175 ... P00760 25546528
    154547 4u3e:A (1.64) BS01 ZN 1.17.4.2 GO:0000166 ... Q9WYL6 25157154
    154548 4u3e:B (1.64) BS01 ZN 1.17.4.2 GO:0000166 ... Q9WYL6 25157154
    154549 4u3f:C (3.2312) BS01 HEM ? GO:0005737 ... P18946 N/A
    154550 4u3f:C (3.2312) BS02 HEM ? GO:0005737 ... P18946 N/A
    154551 4u3f:C (3.2312) BS03 Y52 ? GO:0005737 ... P18946 N/A PDBbind: -logKd/Ki=8.39, Ki=4.1nM
    154552 4u3f:C (3.2312) BS04 U10 ? GO:0005737 ... P18946 N/A
    154553 4u3f:D (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    154554 4u3f:E (3.2312) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 N/A
    154555 4u3f:P (3.2312) BS01 HEM ? GO:0005737 ... P18946 N/A
    154556 4u3f:P (3.2312) BS02 HEM ? GO:0005737 ... P18946 N/A
    154557 4u3f:P (3.2312) BS03 Y52 ? GO:0005737 ... P18946 N/A
    154558 4u3f:P (3.2312) BS04 U10 ? GO:0005737 ... P18946 N/A
    154559 4u3f:Q (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    154560 4u3f:R (3.2312) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 N/A
    154561 4u3j:A (2.81) BS01 GTP 3.6.5.- GO:0000070 ... P09733 25097237
    154562 4u3j:B (2.81) BS01 GTP ? GO:0000022 ... P02557 25097237
    154563 4u3m:C0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    154564 4u3m:C1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    154565 4u3m:C2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    154566 4u3m:C3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    154567 4u3m:C3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    154568 4u3m:C3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    154569 4u3m:C4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    154570 4u3m:C5 (3.0) BS01 rna ? GO:0000028 ... Q01855 25209664
    154571 4u3m:C5 (3.0) BS02 rna ? GO:0000028 ... Q01855 25209664
    154572 4u3m:C5 (3.0) BS03 OHX ? GO:0000028 ... Q01855 25209664
    154573 4u3m:C6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    154574 4u3m:C7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    154575 4u3m:C8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    154576 4u3m:C8 (3.0) BS02 MG ? GO:0000054 ... P0CX55 25209664
    154577 4u3m:C9 (3.0) BS01 rna ? GO:0000028 ... P07280 25209664
    154578 4u3m:D0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    154579 4u3m:D2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    154580 4u3m:D3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    154581 4u3m:D4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    154582 4u3m:D5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    154583 4u3m:D6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    154584 4u3m:D6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    154585 4u3m:D7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    154586 4u3m:D8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    154587 4u3m:D9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    154588 4u3m:D9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    154589 4u3m:D9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    154590 4u3m:E0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    154591 4u3m:E1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    154592 4u3m:E1 (3.0) BS02 ZN ? GO:0003735 ... P05759 25209664
    154593 4u3m:L2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    154594 4u3m:L2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    154595 4u3m:L2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    154596 4u3m:L3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    154597 4u3m:L3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    154598 4u3m:L3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    154599 4u3m:L4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    154600 4u3m:L4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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