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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154201 4u25:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154202 4u25:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154203 4u25:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154204 4u25:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154205 4u25:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154206 4u25:B5 (2.9) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    154207 4u25:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    154208 4u25:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    154209 4u25:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    154210 4u25:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    154211 4u25:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    154212 4u25:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154213 4u25:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154214 4u25:BH (2.9) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    154215 4u25:BI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154216 4u25:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154217 4u25:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154218 4u25:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154219 4u25:BL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    154220 4u25:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154221 4u25:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154222 4u25:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154223 4u25:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    154224 4u25:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    154225 4u25:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154226 4u25:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154227 4u25:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154228 4u25:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154229 4u25:BS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    154230 4u25:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154231 4u25:BU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    154232 4u25:BV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    154233 4u25:BV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    154234 4u25:BW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154235 4u25:BW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154236 4u25:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154237 4u25:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154238 4u25:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154239 4u25:BZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154240 4u25:CB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154241 4u25:CB (2.9) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    154242 4u25:CD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154243 4u25:CD (2.9) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    154244 4u25:CE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154245 4u25:CF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    154246 4u25:CG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    154247 4u25:CH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154248 4u25:CI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154249 4u25:CJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154250 4u25:CK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154251 4u25:CL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154252 4u25:CM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154253 4u25:CN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154254 4u25:CO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154255 4u25:CO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154256 4u25:CP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154257 4u25:CQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154258 4u25:CR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154259 4u25:CS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154260 4u25:CT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154261 4u25:CU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    154262 4u25:D0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154263 4u25:D1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154264 4u25:D2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154265 4u25:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154266 4u25:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154267 4u25:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    154268 4u25:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    154269 4u25:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    154270 4u25:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    154271 4u25:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    154272 4u25:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154273 4u25:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154274 4u25:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154275 4u25:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154276 4u25:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154277 4u25:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    154278 4u25:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154279 4u25:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154280 4u25:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154281 4u25:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    154282 4u25:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    154283 4u25:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154284 4u25:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154285 4u25:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154286 4u25:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154287 4u25:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    154288 4u25:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154289 4u25:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    154290 4u25:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    154291 4u25:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    154292 4u25:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154293 4u25:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154294 4u25:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154295 4u25:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154296 4u25:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154297 4u26:AB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154298 4u26:AD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154299 4u26:AE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154300 4u26:AF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    154301 4u26:AG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    154302 4u26:AH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154303 4u26:AI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154304 4u26:AJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154305 4u26:AK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154306 4u26:AK (2.8) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    154307 4u26:AL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154308 4u26:AM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154309 4u26:AN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154310 4u26:AO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154311 4u26:AO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154312 4u26:AP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154313 4u26:AQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154314 4u26:AR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154315 4u26:AS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154316 4u26:AT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154317 4u26:AU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    154318 4u26:B0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154319 4u26:B1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154320 4u26:B2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154321 4u26:B3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154322 4u26:B4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154323 4u26:B4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154324 4u26:B5 (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    154325 4u26:BC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    154326 4u26:BC (2.8) BS02 MG ? GO:0000027 ... P60422 24957822
    154327 4u26:BD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    154328 4u26:BE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    154329 4u26:BF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    154330 4u26:BF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    154331 4u26:BG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154332 4u26:BH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154333 4u26:BH (2.8) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    154334 4u26:BI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154335 4u26:BJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154336 4u26:BK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154337 4u26:BK (2.8) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154338 4u26:BL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    154339 4u26:BM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154340 4u26:BM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154341 4u26:BN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154342 4u26:BO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    154343 4u26:BO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    154344 4u26:BP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154345 4u26:BP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154346 4u26:BQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154347 4u26:BR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154348 4u26:BS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    154349 4u26:BT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154350 4u26:BU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    154351 4u26:BV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    154352 4u26:BV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    154353 4u26:BW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154354 4u26:BW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154355 4u26:BX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154356 4u26:BY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154357 4u26:BZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154358 4u26:CB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154359 4u26:CB (2.8) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    154360 4u26:CD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154361 4u26:CD (2.8) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    154362 4u26:CE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154363 4u26:CF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    154364 4u26:CG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    154365 4u26:CH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154366 4u26:CI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154367 4u26:CJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154368 4u26:CK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154369 4u26:CL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154370 4u26:CM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154371 4u26:CN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154372 4u26:CO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154373 4u26:CO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154374 4u26:CP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154375 4u26:CQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154376 4u26:CR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154377 4u26:CS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154378 4u26:CT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154379 4u26:CU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    154380 4u26:D0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154381 4u26:D1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154382 4u26:D2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154383 4u26:D3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154384 4u26:D4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154385 4u26:D4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154386 4u26:DC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    154387 4u26:DD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    154388 4u26:DE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    154389 4u26:DF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    154390 4u26:DF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    154391 4u26:DG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154392 4u26:DH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154393 4u26:DI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154394 4u26:DJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154395 4u26:DK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154396 4u26:DK (2.8) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154397 4u26:DL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    154398 4u26:DM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154399 4u26:DM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154400 4u26:DN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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