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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154001 4u20:CJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154002 4u20:CK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154003 4u20:CL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154004 4u20:CM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154005 4u20:CN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154006 4u20:CO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154007 4u20:CO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154008 4u20:CP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154009 4u20:CQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154010 4u20:CR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154011 4u20:CS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154012 4u20:CT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154013 4u20:CU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    154014 4u20:D0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154015 4u20:D1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154016 4u20:D2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154017 4u20:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154018 4u20:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154019 4u20:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    154020 4u20:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    154021 4u20:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    154022 4u20:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    154023 4u20:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    154024 4u20:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154025 4u20:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154026 4u20:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154027 4u20:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154028 4u20:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154029 4u20:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    154030 4u20:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154031 4u20:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154032 4u20:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154033 4u20:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    154034 4u20:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    154035 4u20:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154036 4u20:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154037 4u20:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154038 4u20:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154039 4u20:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    154040 4u20:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154041 4u20:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    154042 4u20:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    154043 4u20:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    154044 4u20:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154045 4u20:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154046 4u20:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154047 4u20:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154048 4u20:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154049 4u20:DZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154050 4u21:A (1.3908) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    154051 4u21:A (1.3908) BS02 FWF ? GO:0015276 ... P19491 25109876
    154052 4u21:B (1.3908) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    154053 4u21:B (1.3908) BS02 FWF ? GO:0015276 ... P19491 25109876
    154054 4u22:A (1.4409) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    154055 4u22:A (1.4409) BS02 FWF ? GO:0015276 ... P19491 25109876
    154056 4u23:A (1.6734) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    154057 4u23:A (1.6734) BS02 FWF ? GO:0015276 ... P19491 25109876
    154058 4u24:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154059 4u24:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154060 4u24:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154061 4u24:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    154062 4u24:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    154063 4u24:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154064 4u24:AI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154065 4u24:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154066 4u24:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154067 4u24:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    154068 4u24:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154069 4u24:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154070 4u24:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154071 4u24:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154072 4u24:AO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154073 4u24:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154074 4u24:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154075 4u24:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154076 4u24:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154077 4u24:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154078 4u24:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    154079 4u24:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154080 4u24:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154081 4u24:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154082 4u24:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154083 4u24:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154084 4u24:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154085 4u24:B5 (2.9) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    154086 4u24:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    154087 4u24:BC (2.9) BS02 MG ? GO:0000027 ... P60422 24957822
    154088 4u24:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    154089 4u24:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    154090 4u24:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    154091 4u24:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    154092 4u24:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154093 4u24:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154094 4u24:BH (2.9) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    154095 4u24:BI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154096 4u24:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154097 4u24:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154098 4u24:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154099 4u24:BL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    154100 4u24:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154101 4u24:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154102 4u24:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154103 4u24:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    154104 4u24:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    154105 4u24:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154106 4u24:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154107 4u24:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154108 4u24:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154109 4u24:BS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    154110 4u24:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154111 4u24:BU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    154112 4u24:BV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    154113 4u24:BV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    154114 4u24:BW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154115 4u24:BW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154116 4u24:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154117 4u24:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154118 4u24:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154119 4u24:BZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154120 4u24:CB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154121 4u24:CB (2.9) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    154122 4u24:CD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154123 4u24:CE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154124 4u24:CF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    154125 4u24:CG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    154126 4u24:CH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154127 4u24:CI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154128 4u24:CJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154129 4u24:CK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154130 4u24:CL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154131 4u24:CM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154132 4u24:CN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154133 4u24:CO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154134 4u24:CO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154135 4u24:CP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154136 4u24:CQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154137 4u24:CR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154138 4u24:CS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154139 4u24:CT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154140 4u24:CU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    154141 4u24:D0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    154142 4u24:D1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    154143 4u24:D2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    154144 4u24:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    154145 4u24:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    154146 4u24:D4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    154147 4u24:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    154148 4u24:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    154149 4u24:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    154150 4u24:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    154151 4u24:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    154152 4u24:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    154153 4u24:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    154154 4u24:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    154155 4u24:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    154156 4u24:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    154157 4u24:DK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    154158 4u24:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    154159 4u24:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    154160 4u24:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    154161 4u24:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    154162 4u24:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    154163 4u24:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    154164 4u24:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    154165 4u24:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    154166 4u24:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    154167 4u24:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    154168 4u24:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    154169 4u24:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    154170 4u24:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    154171 4u24:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    154172 4u24:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    154173 4u24:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    154174 4u24:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    154175 4u24:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    154176 4u24:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    154177 4u24:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    154178 4u24:DZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    154179 4u25:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    154180 4u25:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    154181 4u25:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    154182 4u25:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    154183 4u25:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    154184 4u25:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154185 4u25:AI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    154186 4u25:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    154187 4u25:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    154188 4u25:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    154189 4u25:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    154190 4u25:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    154191 4u25:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    154192 4u25:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    154193 4u25:AO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    154194 4u25:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    154195 4u25:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    154196 4u25:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    154197 4u25:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    154198 4u25:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    154199 4u25:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    154200 4u25:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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