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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    153801 4u1v:AG (3.0) BS01 rna ? GO:0003723 ... P02359 24957822
    153802 4u1v:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    153803 4u1v:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    153804 4u1v:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    153805 4u1v:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    153806 4u1v:AK (3.0) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    153807 4u1v:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    153808 4u1v:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    153809 4u1v:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 24957822
    153810 4u1v:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    153811 4u1v:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    153812 4u1v:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    153813 4u1v:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 24957822
    153814 4u1v:AR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    153815 4u1v:AS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    153816 4u1v:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    153817 4u1v:AU (3.0) BS01 rna ? GO:0003735 ... P68679 24957822
    153818 4u1v:B0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    153819 4u1v:B1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    153820 4u1v:B2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    153821 4u1v:B3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    153822 4u1v:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    153823 4u1v:B4 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    153824 4u1v:B5 (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    153825 4u1v:BC (3.0) BS01 rna ? GO:0000027 ... P60422 24957822
    153826 4u1v:BD (3.0) BS01 rna ? GO:0000027 ... P60438 24957822
    153827 4u1v:BE (3.0) BS01 rna ? GO:0001070 ... P60723 24957822
    153828 4u1v:BF (3.0) BS01 rna ? GO:0000027 ... P62399 24957822
    153829 4u1v:BF (3.0) BS02 rna ? GO:0000027 ... P62399 24957822
    153830 4u1v:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 24957822
    153831 4u1v:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    153832 4u1v:BH (3.0) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    153833 4u1v:BI (3.0) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    153834 4u1v:BJ (3.0) BS01 rna ? GO:0002181 ... P0AA10 24957822
    153835 4u1v:BK (3.0) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    153836 4u1v:BK (3.0) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    153837 4u1v:BL (3.0) BS01 rna ? GO:0002181 ... P02413 24957822
    153838 4u1v:BM (3.0) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    153839 4u1v:BM (3.0) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    153840 4u1v:BN (3.0) BS01 rna ? GO:0000027 ... P0AG44 24957822
    153841 4u1v:BO (3.0) BS01 rna ? GO:0002181 ... P0C018 24957822
    153842 4u1v:BO (3.0) BS02 rna ? GO:0002181 ... P0C018 24957822
    153843 4u1v:BP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    153844 4u1v:BP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    153845 4u1v:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    153846 4u1v:BR (3.0) BS01 rna ? GO:0002181 ... P0AG48 24957822
    153847 4u1v:BS (3.0) BS01 rna ? GO:0002181 ... P61175 24957822
    153848 4u1v:BT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    153849 4u1v:BU (3.0) BS01 rna ? GO:0000027 ... P60624 24957822
    153850 4u1v:BV (3.0) BS01 rna ? GO:0000027 ... P68919 24957822
    153851 4u1v:BV (3.0) BS02 rna ? GO:0000027 ... P68919 24957822
    153852 4u1v:BW (3.0) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    153853 4u1v:BW (3.0) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    153854 4u1v:BX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    153855 4u1v:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    153856 4u1v:BZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 24957822
    153857 4u1v:BZ (3.0) BS02 rna ? GO:0000027 ... P0AG51 24957822
    153858 4u1v:CB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    153859 4u1v:CB (3.0) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    153860 4u1v:CD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    153861 4u1v:CD (3.0) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    153862 4u1v:CE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    153863 4u1v:CF (3.0) BS01 rna ? GO:0003735 ... P02358 24957822
    153864 4u1v:CG (3.0) BS01 rna ? GO:0003723 ... P02359 24957822
    153865 4u1v:CH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    153866 4u1v:CI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    153867 4u1v:CJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    153868 4u1v:CK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    153869 4u1v:CL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    153870 4u1v:CM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    153871 4u1v:CN (3.0) BS01 rna ? GO:0000028 ... P0AG59 24957822
    153872 4u1v:CO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    153873 4u1v:CO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    153874 4u1v:CP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    153875 4u1v:CQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 24957822
    153876 4u1v:CR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    153877 4u1v:CS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    153878 4u1v:CT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    153879 4u1v:CU (3.0) BS01 rna ? GO:0003735 ... P68679 24957822
    153880 4u1v:D0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    153881 4u1v:D1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    153882 4u1v:D2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    153883 4u1v:D3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    153884 4u1v:D4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    153885 4u1v:DC (3.0) BS01 rna ? GO:0000027 ... P60422 24957822
    153886 4u1v:DD (3.0) BS01 rna ? GO:0000027 ... P60438 24957822
    153887 4u1v:DE (3.0) BS01 rna ? GO:0001070 ... P60723 24957822
    153888 4u1v:DF (3.0) BS01 rna ? GO:0000027 ... P62399 24957822
    153889 4u1v:DF (3.0) BS02 rna ? GO:0000027 ... P62399 24957822
    153890 4u1v:DG (3.0) BS01 rna ? GO:0000027 ... P0AG55 24957822
    153891 4u1v:DH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    153892 4u1v:DI (3.0) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    153893 4u1v:DJ (3.0) BS01 rna ? GO:0002181 ... P0AA10 24957822
    153894 4u1v:DK (3.0) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    153895 4u1v:DL (3.0) BS01 rna ? GO:0002181 ... P02413 24957822
    153896 4u1v:DM (3.0) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    153897 4u1v:DM (3.0) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    153898 4u1v:DN (3.0) BS01 rna ? GO:0000027 ... P0AG44 24957822
    153899 4u1v:DO (3.0) BS01 rna ? GO:0002181 ... P0C018 24957822
    153900 4u1v:DO (3.0) BS02 rna ? GO:0002181 ... P0C018 24957822
    153901 4u1v:DP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    153902 4u1v:DP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    153903 4u1v:DQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    153904 4u1v:DR (3.0) BS01 rna ? GO:0002181 ... P0AG48 24957822
    153905 4u1v:DS (3.0) BS01 rna ? GO:0002181 ... P61175 24957822
    153906 4u1v:DT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    153907 4u1v:DU (3.0) BS01 rna ? GO:0000027 ... P60624 24957822
    153908 4u1v:DV (3.0) BS01 rna ? GO:0000027 ... P68919 24957822
    153909 4u1v:DV (3.0) BS02 rna ? GO:0000027 ... P68919 24957822
    153910 4u1v:DW (3.0) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    153911 4u1v:DW (3.0) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    153912 4u1v:DX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    153913 4u1v:DY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    153914 4u1v:DZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 24957822
    153915 4u1v:DZ (3.0) BS02 rna ? GO:0000027 ... P0AG51 24957822
    153916 4u1w:A (3.25) BS01 FWF ? GO:0000149 ... P19491 25109876
    153917 4u1w:B (3.25) BS01 FWF ? GO:0000149 ... P19491 25109876
    153918 4u1w:C (3.25) BS01 FWF ? GO:0000149 ... P19491 25109876
    153919 4u1w:D (3.25) BS01 FWF ? GO:0000149 ... P19491 25109876
    153920 4u1x:A (3.301) BS01 FWF ? GO:0000149 ... P19491 25109876
    153921 4u1x:B (3.301) BS01 FWF ? GO:0000149 ... P19491 25109876
    153922 4u1x:C (3.301) BS01 FWF ? GO:0000149 ... P19491 25109876
    153923 4u1x:D (3.301) BS01 FWF ? GO:0000149 ... P19491 25109876
    153924 4u1y:A (3.8999) BS01 FWD ? GO:0000149 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    153925 4u1y:A (3.8999) BS02 FWF ? GO:0000149 ... P19491 25109876
    153926 4u1y:B (3.8999) BS01 FWD ? GO:0000149 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    153927 4u1y:B (3.8999) BS02 FWF ? GO:0000149 ... P19491 25109876
    153928 4u1y:C (3.8999) BS01 FWF ? GO:0000149 ... P19491 25109876
    153929 4u1y:C (3.8999) BS02 FWD ? GO:0000149 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    153930 4u1y:D (3.8999) BS01 FWF ? GO:0000149 ... P19491 25109876
    153931 4u1y:D (3.8999) BS02 FWD ? GO:0000149 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    153932 4u1z:A (1.9401) BS01 FWF ? GO:0015276 ... P19491 25109876
    153933 4u20:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    153934 4u20:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    153935 4u20:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    153936 4u20:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    153937 4u20:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    153938 4u20:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    153939 4u20:AI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    153940 4u20:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    153941 4u20:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    153942 4u20:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    153943 4u20:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    153944 4u20:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    153945 4u20:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    153946 4u20:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    153947 4u20:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    153948 4u20:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    153949 4u20:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    153950 4u20:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    153951 4u20:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    153952 4u20:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    153953 4u20:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    153954 4u20:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    153955 4u20:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    153956 4u20:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    153957 4u20:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    153958 4u20:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    153959 4u20:B5 (2.9) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    153960 4u20:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    153961 4u20:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    153962 4u20:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    153963 4u20:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    153964 4u20:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    153965 4u20:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    153966 4u20:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    153967 4u20:BH (2.9) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    153968 4u20:BI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    153969 4u20:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    153970 4u20:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    153971 4u20:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    153972 4u20:BL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    153973 4u20:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    153974 4u20:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    153975 4u20:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    153976 4u20:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    153977 4u20:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    153978 4u20:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    153979 4u20:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    153980 4u20:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    153981 4u20:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    153982 4u20:BS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    153983 4u20:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    153984 4u20:BU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    153985 4u20:BV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    153986 4u20:BV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    153987 4u20:BW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    153988 4u20:BW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    153989 4u20:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    153990 4u20:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    153991 4u20:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    153992 4u20:CB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    153993 4u20:CB (2.9) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    153994 4u20:CD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    153995 4u20:CD (2.9) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    153996 4u20:CE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    153997 4u20:CF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    153998 4u20:CG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    153999 4u20:CH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    154000 4u20:CI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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