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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    153001 4tuc:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    153002 4tuc:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    153003 4tuc:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    153004 4tuc:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    153005 4tuc:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    153006 4tuc:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    153007 4tuc:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    153008 4tuc:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    153009 4tuc:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    153010 4tuc:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    153011 4tuc:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    153012 4tuc:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    153013 4tud:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    153014 4tud:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    153015 4tud:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    153016 4tud:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    153017 4tud:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    153018 4tud:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    153019 4tud:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    153020 4tud:QG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    153021 4tud:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    153022 4tud:QI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    153023 4tud:QI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    153024 4tud:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    153025 4tud:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    153026 4tud:QK (3.6) BS02 MG ? GO:0003735 ... P80376 25352689
    153027 4tud:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    153028 4tud:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    153029 4tud:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    153030 4tud:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    153031 4tud:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    153032 4tud:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    153033 4tud:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    153034 4tud:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    153035 4tud:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    153036 4tud:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    153037 4tud:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    153038 4tud:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    153039 4tud:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    153040 4tud:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    153041 4tud:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    153042 4tud:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    153043 4tud:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    153044 4tud:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    153045 4tud:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    153046 4tud:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    153047 4tud:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    153048 4tud:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    153049 4tud:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    153050 4tud:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    153051 4tud:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    153052 4tud:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    153053 4tud:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    153054 4tud:RD (3.6) BS02 MG ? GO:0002181 ... P60405 25352689
    153055 4tud:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    153056 4tud:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    153057 4tud:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    153058 4tud:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    153059 4tud:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    153060 4tud:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    153061 4tud:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    153062 4tud:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    153063 4tud:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    153064 4tud:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    153065 4tud:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    153066 4tud:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    153067 4tud:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    153068 4tud:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    153069 4tud:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    153070 4tud:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    153071 4tud:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    153072 4tud:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    153073 4tud:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    153074 4tud:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    153075 4tud:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    153076 4tud:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    153077 4tud:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    153078 4tud:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    153079 4tud:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    153080 4tud:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    153081 4tud:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    153082 4tud:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    153083 4tud:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    153084 4tud:XD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    153085 4tud:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    153086 4tud:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    153087 4tud:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    153088 4tud:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    153089 4tud:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    153090 4tud:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    153091 4tud:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    153092 4tud:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    153093 4tud:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    153094 4tud:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    153095 4tud:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    153096 4tud:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    153097 4tud:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    153098 4tud:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    153099 4tud:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    153100 4tud:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    153101 4tud:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    153102 4tud:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    153103 4tud:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    153104 4tud:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    153105 4tud:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    153106 4tud:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    153107 4tud:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    153108 4tud:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    153109 4tud:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    153110 4tud:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    153111 4tud:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    153112 4tud:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    153113 4tud:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    153114 4tud:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    153115 4tud:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    153116 4tud:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    153117 4tud:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    153118 4tud:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    153119 4tud:YD (3.6) BS02 MG ? GO:0002181 ... P60405 25352689
    153120 4tud:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    153121 4tud:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    153122 4tud:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    153123 4tud:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    153124 4tud:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    153125 4tud:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    153126 4tud:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    153127 4tud:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    153128 4tud:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    153129 4tud:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    153130 4tud:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    153131 4tud:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    153132 4tud:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    153133 4tud:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    153134 4tud:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    153135 4tud:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    153136 4tud:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    153137 4tud:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    153138 4tud:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    153139 4tud:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    153140 4tud:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    153141 4tud:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    153142 4tud:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    153143 4tud:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    153144 4tud:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    153145 4tue:QB (3.5) BS01 rna ? GO:0003735 ... P80371 25352689
    153146 4tue:QC (3.5) BS01 rna ? GO:0003676 ... P80372 25352689
    153147 4tue:QD (3.5) BS01 rna ? GO:0003723 ... P80373 25352689
    153148 4tue:QD (3.5) BS02 ZN ? GO:0003723 ... P80373 25352689
    153149 4tue:QE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    153150 4tue:QF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    153151 4tue:QF (3.5) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    153152 4tue:QG (3.5) BS01 rna ? GO:0000028 ... P17291 25352689
    153153 4tue:QH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    153154 4tue:QI (3.5) BS01 rna ? GO:0000049 ... P80374 25352689
    153155 4tue:QI (3.5) BS02 rna ? GO:0000049 ... P80374 25352689
    153156 4tue:QJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    153157 4tue:QJ (3.5) BS02 rna ? GO:0000049 ... Q5SHN7 25352689
    153158 4tue:QK (3.5) BS01 rna ? GO:0003735 ... P80376 25352689
    153159 4tue:QK (3.5) BS02 MG ? GO:0003735 ... P80376 25352689
    153160 4tue:QL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    153161 4tue:QM (3.5) BS01 rna ? GO:0000049 ... P80377 25352689
    153162 4tue:QM (3.5) BS02 rna ? GO:0000049 ... P80377 25352689
    153163 4tue:QM (3.5) BS03 MG ? GO:0000049 ... P80377 25352689
    153164 4tue:QN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    153165 4tue:QN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    153166 4tue:QO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    153167 4tue:QO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    153168 4tue:QP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    153169 4tue:QQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    153170 4tue:QR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    153171 4tue:QS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    153172 4tue:QT (3.5) BS01 rna ? GO:0003723 ... P80380 25352689
    153173 4tue:R0 (3.5) BS01 rna ? GO:0003735 ... P60493 25352689
    153174 4tue:R0 (3.5) BS02 rna ? GO:0003735 ... P60493 25352689
    153175 4tue:R0 (3.5) BS03 rna ? GO:0003735 ... P60493 25352689
    153176 4tue:R1 (3.5) BS01 rna ? GO:0003735 ... P60494 25352689
    153177 4tue:R2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    153178 4tue:R3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    153179 4tue:R3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    153180 4tue:R4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    153181 4tue:R4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    153182 4tue:R5 (3.5) BS01 rna ? GO:0003735 ... P80339 25352689
    153183 4tue:R6 (3.5) BS01 rna ? GO:0000049 ... P35871 25352689
    153184 4tue:R7 (3.5) BS01 rna ? GO:0003735 ... P80340 25352689
    153185 4tue:R8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    153186 4tue:R9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    153187 4tue:RD (3.5) BS01 rna ? GO:0002181 ... P60405 25352689
    153188 4tue:RD (3.5) BS02 rna ? GO:0002181 ... P60405 25352689
    153189 4tue:RD (3.5) BS03 MG ? GO:0002181 ... P60405 25352689
    153190 4tue:RE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    153191 4tue:RF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    153192 4tue:RF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    153193 4tue:RG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    153194 4tue:RG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    153195 4tue:RG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    153196 4tue:RH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    153197 4tue:RI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    153198 4tue:RN (3.5) BS01 rna ? GO:0003729 ... P60488 25352689
    153199 4tue:RO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    153200 4tue:RO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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